FvH4_3g15850

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001277
Physical Location & Seq
Forward (+)
9977624 .. 9979710
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15850.t1

Sequence Viewer

Length: 1305 bp
ATGAGTTCCCCAGACTTCTCTCTCTTCCAAACCTCCACACACAAACGCTCACTTCTCCACAGAGCCCCTTCTCTCATCGCAGATGGCTTCCTCTTCGTTGGTGGAGCAGCCATGGCTTTGTCTCTGGTCTGGGCACTCATCTCCTTCATAAACCCTACCTCAACCTTCGACACCATCATCACCTACTCCACCCCTCAAGCCCCTGACTTCACCTACGACCCACCGGAGCCCACGTTTTACGACGATCCAACTCTCAGCTACTCGGTTGGGGATGCCATACAAAACTGGGACGAGAAGCGCAGAGAGTGGCTTAGGGTTCACCCTTCTTTTGGTGTAGGCGATAGGGTTGTTCTTGTTACCGGGTCTCAGCCTTCGGTGTGTAAGAACCCAGTTGGAGATCATTTACAGTTGAGACTCTTCAAGAACAAAGTAGACTACTGCAGGCTTCATGGCTGTGAAGTGTTCTACAACAACGTTCTTCTGGACCCTAAAGGAACCGGTTTCTGGGCCAAGTATCCTATTCTCAGAGCCGCCATGGTTGCCCACCCGGAGGCCGAGTGGATCTACTGGGTCGACTCGGACGCCATATTCACCGACATGGAGTTCAAGTTGCCGTTGGAGAAGTACAAGGAGCATAACTTGGTTGTTCATGGGTGGTGGCACATGGTGAAGCAGCAGAGCTGGACGAGCCTCAACGCTGGTGTGTTCTTGATTAGGAACTGTCAGTGGTCCTTGGATTTCATAGATGAATGGGCCAGCATGGGGCCACAGGGTCCGGCCCAAGAGAAGTGGGGGGAGATTCAGAGATCAATGTTGAAGGACAAGCTGTACCCAGGGTCAGATGATCAGAGTGCTCTTATCTACCTTCTGCTGAAGCAGAAGCAGAAATGGGGGGACAAGGTGTACTTGGAGAGTGACAATTTCCAAAGCTACTGGCTTGGTGTGGTGGATGGGCTTGATAACATCACCAAAGGGTACACGGAGGTTGATAGAGAAATGGGGAAACTGAGGAGGAGGCATGGTGAGAAGGTGAGTGAGTTGTATGGGGAAATGAGGGAGCAGTATATGAAGGATAAGGGGATGTGGAGGGAGAATGTGAGGAGGCCTTTTGTGACACATTTTACTGGGTGTGAGCCTTGTAGTGGGGATTGTAACCCTGATTATACTTGGGAGGATTGTTGGAAAGGGATGCAGAAGGCTTTGAACTATGCAGATAATCAAGTGCTTAGGAAATATGGGTTTGTGCATCCAGACCTACTCAACTCTTCATTGGTTACTCCTTTGCCATTTGATTACCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

435

Amino Acids

50.13

Weight (kDa)

5.77

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 115 - 382 2.2e-53 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 432, 573
AciI CCGC 1 cut(s) 531
AclI AACGTT 1 cut(s) 474
AclWI GGATC 2 cut(s) 239, 569
AcuI CTGAAG 1 cut(s) 893
AcyI GRCGYC 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 4 cut(s) 626, 830, 905, 977
AfiI CCNNNNNNNGG 5 cut(s) 329, 504, 550, 762, 1142
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 4 cut(s) 421, 607, 817, 1204
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 4 cut(s) 258, 681, 826, 930
AluI AGCT 4 cut(s) 258, 681, 826, 930
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 3 cut(s) 126, 369, 406
AlwI GGATC 2 cut(s) 239, 569
AoxI GGCC 6 cut(s) 507, 552, 753, 764, 777, 1103
ApeKI GCWGC 2 cut(s) 107, 673
AsiGI ACCGGT 1 cut(s) 497
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 7 cut(s) 484, 507, 729, 753, 764, 773, 778
AsuC2I CCSGG 2 cut(s) 361, 548
AsuHPI GGTGA 8 cut(s) 172, 202, 311, 583, 679, 958, 1034, 1042
AvaII GGWCC 3 cut(s) 484, 729, 773
BaeGI GKGCMC 1 cut(s) 136
BanII GRGCYC 2 cut(s) 67, 231
Bbv12I GWGCWC 1 cut(s) 856
BbvI GCAGC 2 cut(s) 119, 685
BccI CCATC 3 cut(s) 77, 182, 944
BceAI ACGGC 1 cut(s) 598
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 1 cut(s) 525
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 2 cut(s) 361, 548
BcoDI GTCTC 3 cut(s) 126, 369, 406
BfmI CTRYAG 1 cut(s) 439
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 3 cut(s) 108, 531, 674
BlsI GCNGC 3 cut(s) 109, 532, 675
Bme1390I CCNGG 3 cut(s) 361, 548, 834
Bme18I GGWCC 3 cut(s) 484, 729, 773
BmgT120I GGNCC 7 cut(s) 484, 507, 729, 753, 764, 773, 778
BmiI GGNNCC 5 cut(s) 228, 486, 496, 765, 774
BmrFI CCNGG 3 cut(s) 361, 548, 834
BmrI ACTGGG 4 cut(s) 295, 383, 577, 1134
BmsI GCATC 3 cut(s) 262, 1179, 1255
BmuI ACTGGG 4 cut(s) 295, 383, 577, 1134
Bpu10I CCTNAGC 2 cut(s) 311, 1226
BpuEI CTTGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 361, 548
BsaHI GRCGYC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 5 cut(s) 111, 534, 732, 832, 833
BsaWI WCCGGW 2 cut(s) 223, 497
BsaXI ACNNNNNCTCC 8 cut(s) 218, 248, 542, 572, 593, 623, 1006, 1036
Bsc4I CCNNNNNNNGG 5 cut(s) 329, 504, 550, 762, 1142
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 5 cut(s) 290, 389, 572, 938, 1129
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 5 cut(s) 111, 534, 732, 832, 833
BseGI GGATG 5 cut(s) 277, 955, 1086, 1194, 1246
BseLI CCNNNNNNNGG 5 cut(s) 329, 504, 550, 762, 1142
BseMII CTCAG 4 cut(s) 268, 380, 538, 998
BseNI ACTGG 5 cut(s) 290, 389, 572, 938, 1129
BseRI GAGGAG 3 cut(s) 1024, 1027, 1114
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 2 cut(s) 119, 685
BshFI GGCC 6 cut(s) 509, 554, 755, 766, 779, 1105
BshTI ACCGGT 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 856
BsiSI CCGG 5 cut(s) 224, 360, 498, 548, 776
BslFI GGGAC 2 cut(s) 302, 908
BslI CCNNNNNNNGG 5 cut(s) 329, 504, 550, 762, 1142
BsmAI GTCTC 3 cut(s) 126, 369, 406
BsmFI GGGAC 2 cut(s) 302, 908
BsnI GGCC 6 cut(s) 509, 554, 755, 766, 779, 1105
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 4 cut(s) 67, 136, 231, 856
Bsp143I GATC 5 cut(s) 244, 397, 561, 806, 844
Bsp19I CCATGG 2 cut(s) 111, 534
BspACI CCGC 1 cut(s) 531
BspANI GGCC 6 cut(s) 509, 554, 755, 766, 779, 1105
BspCNI CTCAG 4 cut(s) 267, 379, 537, 999
BspLI GGNNCC 5 cut(s) 228, 486, 496, 765, 774
BspMAI CTGCAG 1 cut(s) 443
BspPI GGATC 2 cut(s) 239, 569
BspTNI GGTCTC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 5 cut(s) 290, 389, 572, 938, 1129
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 5 cut(s) 111, 534, 732, 832, 833
BssMI GATC 5 cut(s) 244, 397, 561, 806, 844
BssNI GRCGYC 1 cut(s) 582
BssT1I CCWWGG 3 cut(s) 111, 534, 732
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 408, 722
Bst6I CTCTTC 4 cut(s) 29, 98, 422, 1270
BstACI GRCGYC 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 443, 757
BstDEI CTNAG 6 cut(s) 254, 311, 366, 524, 1007, 1226
BstDSI CCRYGG 2 cut(s) 111, 534
BstF5I GGATG 5 cut(s) 277, 955, 1086, 1194, 1246
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 5 cut(s) 247, 400, 564, 809, 847
BstMAI GTCTC 3 cut(s) 126, 369, 406
BstMBI GATC 5 cut(s) 244, 397, 561, 806, 844
BstMWI GCNNNNNNNGC 3 cut(s) 113, 539, 687
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 3 cut(s) 359, 546, 832
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 119, 685
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 6 cut(s) 509, 554, 755, 766, 779, 1105
BtgI CCRYGG 2 cut(s) 111, 534
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 5 cut(s) 277, 955, 1086, 1194, 1246
BtsIMutI CAGTG 1 cut(s) 731
Cac8I GCNNGC 2 cut(s) 443, 757
CfoI GCGC 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 7 cut(s) 484, 507, 729, 753, 764, 773, 778
CseI GACGC 1 cut(s) 590
Csp6I GTAC 4 cut(s) 625, 829, 904, 976
CspAI ACCGGT 1 cut(s) 497
CspCI CAANNNNNGTGG 2 cut(s) 770, 805
CviAII CATG 8 cut(s) 112, 449, 535, 598, 650, 664, 760, 1019
CviQI GTAC 4 cut(s) 625, 829, 904, 976
DdeI CTNAG 6 cut(s) 254, 311, 366, 524, 1007, 1226
DpnI GATC 5 cut(s) 246, 399, 563, 808, 846
DpnII GATC 5 cut(s) 244, 397, 561, 806, 844
DraIII CACNNNGTG 1 cut(s) 667
Eam1104I CTCTTC 4 cut(s) 29, 98, 422, 1270
EarI CTCTTC 4 cut(s) 29, 98, 422, 1270
Eco130I CCWWGG 3 cut(s) 111, 534, 732
Eco147I AGGCCT 1 cut(s) 1105
Eco24I GRGCYC 2 cut(s) 67, 231
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 484, 729, 773
Eco57I CTGAAG 1 cut(s) 893
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 3 cut(s) 111, 534, 732
EcoT38I GRGCYC 2 cut(s) 67, 231
ErhI CCWWGG 3 cut(s) 111, 534, 732
FaeI CATG 8 cut(s) 115, 452, 538, 601, 653, 667, 763, 1022
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 2 cut(s) 302, 908
FatI CATG 8 cut(s) 111, 448, 534, 597, 649, 663, 759, 1018
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 2 cut(s) 432, 573
Fnu4HI GCNGC 3 cut(s) 108, 531, 674
FokI GGATG 5 cut(s) 284, 962, 1093, 1201, 1233
FriOI GRGCYC 2 cut(s) 67, 231
Fsp4HI GCNGC 3 cut(s) 108, 531, 674
GlaI GCGC 1 cut(s) 299
GluI GCNGC 3 cut(s) 108, 531, 674
HaeIII GGCC 6 cut(s) 509, 554, 755, 766, 779, 1105
HapII CCGG 5 cut(s) 224, 360, 498, 548, 776
HgaI GACGC 1 cut(s) 590
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 8 cut(s) 115, 452, 538, 601, 653, 667, 763, 1022
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 3 cut(s) 414, 575, 799
HpaII CCGG 5 cut(s) 224, 360, 498, 548, 776
HphI GGTGA 8 cut(s) 172, 202, 311, 583, 679, 958, 1034, 1042
Hpy166II GTNNAC 5 cut(s) 319, 433, 574, 904, 978
Hpy188I TCNGA 5 cut(s) 527, 580, 804, 841, 849
Hpy188III TCNNGA 4 cut(s) 421, 482, 709, 1250
Hpy8I GTNNAC 5 cut(s) 319, 433, 574, 904, 978
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 408, 722
HpyCH4IV ACGT 2 cut(s) 233, 474
HpyCH4V TGCA 4 cut(s) 441, 1192, 1211, 1246
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 539, 687
HpyF3I CTNAG 6 cut(s) 254, 311, 366, 524, 1007, 1226
HpySE526I ACGT 2 cut(s) 233, 474
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 8 cut(s) 115, 452, 538, 601, 653, 667, 763, 1022
HspAI GCGC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 5 cut(s) 244, 397, 561, 806, 844
LmnI GCTCC 4 cut(s) 104, 226, 631, 1057
Lsp1109I GCAGC 2 cut(s) 119, 685
LweI GCATC 3 cut(s) 262, 1179, 1255
MaeII ACGT 2 cut(s) 233, 474
MaeIII GTNAC 5 cut(s) 355, 914, 1111, 1151, 1273
MalI GATC 5 cut(s) 246, 399, 563, 808, 846
MboI GATC 5 cut(s) 244, 397, 561, 806, 844
MboII GAAGA 5 cut(s) 16, 85, 409, 470, 1257
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 4 cut(s) 67, 136, 231, 856
MluCI AATT 1 cut(s) 919
MlyI GAGTC 2 cut(s) 408, 569
MmeI TCCRAC 4 cut(s) 272, 373, 597, 1160
MslI CAYNNNNRTG 2 cut(s) 453, 596
MspI CCGG 5 cut(s) 224, 360, 498, 548, 776
MspR9I CCNGG 3 cut(s) 361, 548, 834
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 3 cut(s) 113, 539, 687
NciI CCSGG 2 cut(s) 361, 548
NcoI CCATGG 2 cut(s) 111, 534
NdeII GATC 5 cut(s) 244, 397, 561, 806, 844
NlaIII CATG 8 cut(s) 115, 452, 538, 601, 653, 667, 763, 1022
NlaIV GGNNCC 5 cut(s) 228, 486, 496, 765, 774
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 2 cut(s) 914, 1111
PasI CCCWGGG 1 cut(s) 833
PceI AGGCCT 1 cut(s) 1105
PfeI GAWTC 1 cut(s) 799
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 3 cut(s) 109, 532, 675
PleI GAGTC 2 cut(s) 408, 569
PpsI GAGTC 2 cut(s) 408, 569
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 5 cut(s) 228, 486, 496, 765, 774
PspPI GGNCC 7 cut(s) 484, 507, 729, 753, 764, 773, 778
PstI CTGCAG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 561
RsaI GTAC 4 cut(s) 626, 830, 905, 977
RsaNI GTAC 4 cut(s) 625, 829, 904, 976
RseI CAYNNNNRTG 2 cut(s) 453, 596
SalI GTCGAC 1 cut(s) 572
SatI GCNGC 3 cut(s) 108, 531, 674
Sau3AI GATC 5 cut(s) 244, 397, 561, 806, 844
Sau96I GGNCC 7 cut(s) 484, 507, 729, 753, 764, 773, 778
SchI GAGTC 2 cut(s) 408, 569
ScrFI CCNGG 3 cut(s) 361, 548, 834
SduI GDGCHC 4 cut(s) 67, 136, 231, 856
SfaNI GCATC 3 cut(s) 262, 1179, 1255
SfcI CTRYAG 1 cut(s) 439
SinI GGWCC 3 cut(s) 484, 729, 773
SmiMI CAYNNNNRTG 2 cut(s) 453, 596
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 1 cut(s) 919
SseBI AGGCCT 1 cut(s) 1105
SsiI CCGC 1 cut(s) 531
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 3 cut(s) 359, 546, 832
StyI CCWWGG 3 cut(s) 111, 534, 732
TaaI ACNGT 2 cut(s) 408, 722
TaiI ACGT 2 cut(s) 236, 477
TaqI TCGA 2 cut(s) 168, 573
TasI AATT 1 cut(s) 919
TatI WGTACW 2 cut(s) 624, 903
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 1 cut(s) 799
TscAI CASTG 1 cut(s) 731
TseFI GTSAC 2 cut(s) 914, 1111
TseI GCWGC 2 cut(s) 107, 673
Tsp45I GTSAC 2 cut(s) 914, 1111
TspDTI ATGAA 7 cut(s) 136, 437, 638, 730, 762, 1082, 1257
TspGWI ACGGA 1 cut(s) 995
TspRI CASTG 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 484, 729, 773
XmiI GTMKAC 2 cut(s) 432, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.