AT4G37690

Galactosyl transferase GMA12 MNN10 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17707894 .. 17709847
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37690.1

Sequence Viewer

Length: 1299 bp
ATGGGAAAACCCGGCGGCGCAAAGACCAGAACCGCCGTATGTTTATCAGACGGTGTTTTCTTTCTCGCCGGAGCTTTCATGTCTCTCACTCTCGTCTGGTCTTACTTCTCAATCTTTTCACCTTCTTTCACCAGTTTACGTCACGACGGCAAACCGGTTCAATGCTCCGGTTTAGACATGCAATTCGACCCATCCGAGCCCGGTTTTTACGACGACCCGGATCTAAGCTACTCGATCGAGAAACCAATCACAAAATGGGACGAGAAACGAAACCAATGGTTTGAATCACACCCATCTTTCAAACCCGGTTCAGAAAACCGGATCGTAATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTATTACTCCGATGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGTCACGACATCTTCTACAGCAATTCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGTGGTTAAAGCGGCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTCACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACACAACCTCGTCGTTCACGGTTGGCCAAATATAATCTACGAGAAACAGAGCTGGACGGCGTTAAACGCCGGCGTTTTCTTAATAAGAAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCAGTGAGTCCAGATTACAAAAAATGGGGTCCCATCCAACGGTCGATATTCAAAGATAAGTTGTTTCCAGAGTCAGATGATCAAACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTGTATTATCCTAAGATATACCTCGAAGCAGAGTATTATCTCCAAGGGTATTGGATTGGTGTATTTGGGGATTTCGCCAACGTGACGGAACGGTATCTTGAGATGGAACGAGAAGACGACACGTTGCGTAGGCGTCACGCGGAGAAAGTGAGCGAACGATACGGTGCGTTTAGAGAAGAGCGGTTTTTGAAAGGCGAGTTTGGTGGGAGAGGAAGTCGCAGACGCGCGTTTATAACGCATTTTACGGGATGTCAACCATGTAGCGGTGATCATAATCCGAGTTACGATGGTGACACGTGTTGGAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTTACGTTCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAATGAAGCTTGGTGA

Protein Analysis

432

Amino Acids

50.29

Weight (kDa)

6.57

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 105 - 378 1.6e-64 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 852, 1097
AasI GACNNNNNNGTC 1 cut(s) 750
AccBSI CCGCTC 1 cut(s) 1045
AccII CGCG 4 cut(s) 1004, 1089, 1091, 1215
AclWI GGATC 2 cut(s) 228, 329
AcoI YGGCCR 1 cut(s) 632
AcsI RAATTY 2 cut(s) 472, 578
AcvI CACGTG 2 cut(s) 729, 1161
AcyI GRCGYC 1 cut(s) 997
AfiI CCNNNNNNNGG 3 cut(s) 529, 783, 1127
AflIII ACRYGT 4 cut(s) 726, 984, 1158, 1160
AgeI ACCGGT 2 cut(s) 154, 335
AgsI TTSAA 7 cut(s) 161, 284, 301, 397, 796, 1054, 1262
AluBI AGCT 4 cut(s) 74, 228, 660, 1292
AluI AGCT 4 cut(s) 74, 228, 660, 1292
Alw26I GTCTC 2 cut(s) 87, 366
AlwI GGATC 2 cut(s) 228, 329
AoxI GGCC 1 cut(s) 632
ApoI RAATTY 2 cut(s) 472, 578
ArsI GACNNNNNNTTYG 6 cut(s) 167, 199, 390, 412, 422, 444
AsiGI ACCGGT 2 cut(s) 154, 335
AspLEI GCGC 3 cut(s) 20, 1091, 1215
AspS9I GGNCC 2 cut(s) 743, 773
AsuC2I CCSGG 4 cut(s) 12, 201, 218, 306
AsuHPI GGTGA 8 cut(s) 111, 121, 512, 559, 587, 1142, 1166, 1219
AvaII GGWCC 2 cut(s) 743, 773
BalI TGGCCA 1 cut(s) 634
BanII GRGCYC 2 cut(s) 201, 1186
BbrPI CACGTG 2 cut(s) 729, 1161
BbsI GAAGAC 1 cut(s) 984
BccI CCATC 5 cut(s) 199, 301, 785, 961, 1145
BceAI ACGGC 6 cut(s) 20, 163, 337, 681, 846, 1255
BclI TGATCA 3 cut(s) 823, 1132, 1176
BcnI CCSGG 4 cut(s) 12, 201, 218, 306
BcoDI GTCTC 2 cut(s) 87, 366
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 3 cut(s) 16, 507, 590
BlsI GCNGC 3 cut(s) 17, 508, 591
Bme1390I CCNGG 4 cut(s) 12, 201, 218, 306
Bme18I GGWCC 2 cut(s) 743, 773
BmgT120I GGNCC 2 cut(s) 743, 773
BmiI GGNNCC 3 cut(s) 744, 774, 775
BmrFI CCNGG 4 cut(s) 12, 201, 218, 306
BmsI GCATC 3 cut(s) 380, 501, 1200
BpiI GAAGAC 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 4 cut(s) 12, 201, 218, 306
BsaAI YACGTR 2 cut(s) 729, 1161
BsaBI GATNNNNATC 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 997
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 424, 907
BsaWI WCCGGW 5 cut(s) 154, 167, 318, 335, 493
BsaXI ACNNNNNCTCC 2 cut(s) 1063, 1093
Bsc4I CCNNNNNNNGG 3 cut(s) 529, 783, 1127
Bse118I RCCGGY 3 cut(s) 154, 335, 677
Bse1I ACTGG 2 cut(s) 132, 746
Bse8I GATNNNNATC 1 cut(s) 1137
BseDI CCNNGG 2 cut(s) 424, 907
BseGI GGATG 4 cut(s) 191, 460, 777, 1118
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 3 cut(s) 529, 783, 1127
BseNI ACTGG 2 cut(s) 132, 746
Bsh1236I CGCG 4 cut(s) 1004, 1089, 1091, 1215
Bsh1285I CGRYCG 2 cut(s) 237, 788
BshFI GGCC 1 cut(s) 634
BshTI ACCGGT 2 cut(s) 154, 335
BsiEI CGRYCG 2 cut(s) 237, 788
BslFI GGGAC 3 cut(s) 272, 756, 759
BslI CCNNNNNNNGG 3 cut(s) 529, 783, 1127
BsmAI GTCTC 2 cut(s) 87, 366
BsmFI GGGAC 3 cut(s) 272, 756, 759
BsnI GGCC 1 cut(s) 634
Bso31I GGTCTC 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 201, 1186
Bsp143I GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
Bsp19I CCATGG 1 cut(s) 424
BspANI GGCC 1 cut(s) 634
BspFNI CGCG 4 cut(s) 1004, 1089, 1091, 1215
BspLI GGNNCC 3 cut(s) 744, 774, 775
BspPI GGATC 2 cut(s) 228, 329
BspQI GCTCTTC 1 cut(s) 1035
BspTNI GGTCTC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 1045
BsrFI RCCGGY 3 cut(s) 154, 335, 677
BsrI ACTGG 2 cut(s) 132, 746
BssAI RCCGGY 3 cut(s) 154, 335, 677
BssECI CCNNGG 2 cut(s) 424, 907
BssMI GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
BssNI GRCGYC 1 cut(s) 997
BssT1I CCWWGG 2 cut(s) 424, 907
Bst4CI ACNGT 7 cut(s) 53, 599, 605, 629, 786, 957, 1028
Bst6I CTCTTC 3 cut(s) 459, 728, 1035
BstACI GRCGYC 1 cut(s) 997
BstBAI YACGTR 2 cut(s) 729, 1161
BstC8I GCNNGC 2 cut(s) 516, 679
BstDEI CTNAG 2 cut(s) 224, 876
BstDSI CCRYGG 1 cut(s) 424
BstEII GGTNACC 1 cut(s) 331
BstF5I GGATG 4 cut(s) 191, 460, 777, 1118
BstFNI CGCG 4 cut(s) 1004, 1089, 1091, 1215
BstHHI GCGC 3 cut(s) 20, 1091, 1215
BstKTI GATC 6 cut(s) 223, 237, 324, 826, 1135, 1179
BstMAI GTCTC 2 cut(s) 87, 366
BstMBI GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
BstMCI CGRYCG 2 cut(s) 237, 788
BstMWI GCNNNNNNNGC 2 cut(s) 515, 674
BstNSI RCATGY 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 4 cut(s) 10, 199, 216, 304
BstSFI CTRYAG 1 cut(s) 442
BstUI CGCG 4 cut(s) 1004, 1089, 1091, 1215
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 4 cut(s) 191, 460, 777, 1118
BtsIMutI CAGTG 1 cut(s) 753
Cac8I GCNNGC 2 cut(s) 516, 679
CfoI GCGC 3 cut(s) 20, 1091, 1215
Cfr10I RCCGGY 3 cut(s) 154, 335, 677
Cfr13I GGNCC 2 cut(s) 743, 773
CseI GACGC 3 cut(s) 566, 986, 1095
CspAI ACCGGT 2 cut(s) 154, 335
CviAII CATG 5 cut(s) 79, 178, 425, 574, 1122
CviJI RGCY 8 cut(s) 74, 199, 228, 634, 660, 833, 1184, 1292
CviKI_1 RGCY 8 cut(s) 74, 199, 228, 634, 660, 833, 1184, 1292
DdeI CTNAG 2 cut(s) 224, 876
DpnI GATC 6 cut(s) 222, 236, 323, 825, 1134, 1178
DpnII GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
DraI TTTAAA 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 750
DseDI GACNNNNNNGTC 1 cut(s) 750
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 3 cut(s) 459, 728, 1035
EarI CTCTTC 3 cut(s) 459, 728, 1035
EciI GGCGGA 1 cut(s) 545
Eco130I CCWWGG 2 cut(s) 424, 907
Eco24I GRGCYC 2 cut(s) 201, 1186
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 743, 773
Eco72I CACGTG 2 cut(s) 729, 1161
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 773
EcoO65I GGTNACC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 424, 907
EcoT38I GRGCYC 2 cut(s) 201, 1186
ErhI CCWWGG 2 cut(s) 424, 907
FaeI CATG 5 cut(s) 82, 181, 428, 577, 1125
FaqI GGGAC 3 cut(s) 272, 756, 759
FatI CATG 5 cut(s) 78, 177, 424, 573, 1121
FbaI TGATCA 3 cut(s) 823, 1132, 1176
Fnu4HI GCNGC 3 cut(s) 16, 507, 590
FokI GGATG 4 cut(s) 178, 447, 764, 1125
FriOI GRGCYC 2 cut(s) 201, 1186
Fsp4HI GCNGC 3 cut(s) 16, 507, 590
GlaI GCGC 3 cut(s) 19, 1090, 1214
GluI GCNGC 3 cut(s) 16, 507, 590
HaeIII GGCC 1 cut(s) 634
HgaI GACGC 3 cut(s) 566, 986, 1095
HhaI GCGC 3 cut(s) 20, 1091, 1215
Hin1I GRCGYC 1 cut(s) 997
Hin1II CATG 5 cut(s) 82, 181, 428, 577, 1125
Hin6I GCGC 3 cut(s) 18, 1089, 1213
HinP1I GCGC 3 cut(s) 18, 1089, 1213
HincII GTYRAC 2 cut(s) 608, 1118
HindII GTYRAC 2 cut(s) 608, 1118
HindIII AAGCTT 1 cut(s) 1290
HinfI GANTC 5 cut(s) 284, 420, 551, 751, 815
HphI GGTGA 8 cut(s) 111, 121, 512, 559, 587, 1142, 1166, 1219
Hpy166II GTNNAC 5 cut(s) 137, 341, 608, 625, 1118
Hpy188III TCNNGA 6 cut(s) 143, 238, 431, 755, 812, 962
Hpy8I GTNNAC 5 cut(s) 137, 341, 608, 625, 1118
Hpy99I CGWCG 4 cut(s) 149, 215, 560, 623
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 7 cut(s) 53, 599, 605, 629, 786, 957, 1028
HpyCH4IV ACGT 6 cut(s) 139, 728, 945, 986, 1160, 1227
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 674
HpyF3I CTNAG 2 cut(s) 224, 876
HpySE526I ACGT 6 cut(s) 139, 728, 945, 986, 1160, 1227
Hsp92I GRCGYC 1 cut(s) 997
Hsp92II CATG 5 cut(s) 82, 181, 428, 577, 1125
HspAI GCGC 3 cut(s) 18, 1089, 1213
KflI GGGWCCC 1 cut(s) 773
KroI GCCGGC 1 cut(s) 677
KroNI GCCGGC 1 cut(s) 679
Ksp22I TGATCA 3 cut(s) 823, 1132, 1176
Kzo9I GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 2 cut(s) 71, 170
LweI GCATC 3 cut(s) 380, 501, 1200
MaeII ACGT 6 cut(s) 139, 728, 945, 986, 1160, 1227
MaeIII GTNAC 9 cut(s) 140, 331, 428, 599, 946, 998, 1145, 1154, 1223
MalI GATC 6 cut(s) 222, 236, 323, 825, 1134, 1178
MbiI CCGCTC 1 cut(s) 1045
MboI GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
MboII GAAGA 8 cut(s) 430, 446, 449, 478, 556, 745, 989, 1052
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 201, 1186
MlsI TGGCCA 1 cut(s) 634
MluCI AATT 7 cut(s) 182, 448, 472, 578, 697, 720, 1189
MluNI TGGCCA 1 cut(s) 634
MlyI GAGTC 2 cut(s) 760, 824
MmeI TCCRAC 3 cut(s) 579, 805, 1145
MnlI CCTC 6 cut(s) 358, 520, 626, 896, 1067, 1275
Mox20I TGGCCA 1 cut(s) 634
MreI CGCCGGCG 1 cut(s) 677
MroNI GCCGGC 1 cut(s) 677
MscI TGGCCA 1 cut(s) 634
MseI TTAA 6 cut(s) 501, 582, 671, 689, 719, 1188
MslI CAYNNNNRTG 1 cut(s) 572
Msp20I TGGCCA 1 cut(s) 634
MspR9I CCNGG 4 cut(s) 12, 201, 218, 306
MvnI CGCG 4 cut(s) 1004, 1089, 1091, 1215
MwoI GCNNNNNNNGC 2 cut(s) 515, 674
NaeI GCCGGC 1 cut(s) 679
NciI CCSGG 4 cut(s) 12, 201, 218, 306
NcoI CCATGG 1 cut(s) 424
NdeII GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
NgoMIV GCCGGC 1 cut(s) 677
NlaIII CATG 5 cut(s) 82, 181, 428, 577, 1125
NlaIV GGNNCC 3 cut(s) 744, 774, 775
NmuCI GTSAC 5 cut(s) 140, 428, 946, 998, 1154
NspI RCATGY 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 679
PfeI GAWTC 3 cut(s) 284, 420, 551
PinAI ACCGGT 2 cut(s) 154, 335
PkrI GCNGC 3 cut(s) 17, 508, 591
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 2 cut(s) 759, 823
PmaCI CACGTG 2 cut(s) 729, 1161
PmlI CACGTG 2 cut(s) 729, 1161
PpsI GAGTC 2 cut(s) 759, 823
Ppu21I YACGTR 2 cut(s) 729, 1161
PpuMI RGGWCCY 1 cut(s) 773
PsiI TTATAA 2 cut(s) 852, 1097
Psp5II RGGWCCY 1 cut(s) 773
PspCI CACGTG 2 cut(s) 729, 1161
PspEI GGTNACC 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 744, 774, 775
PspPI GGNCC 2 cut(s) 743, 773
PspPPI RGGWCCY 1 cut(s) 773
PsuI RGATCY 1 cut(s) 220
PvuI CGATCG 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 6 cut(s) 501, 582, 671, 689, 719, 1188
SatI GCNGC 3 cut(s) 16, 507, 590
Sau3AI GATC 6 cut(s) 220, 234, 321, 823, 1132, 1176
Sau96I GGNCC 2 cut(s) 743, 773
SchI GAGTC 2 cut(s) 760, 824
ScrFI CCNGG 4 cut(s) 12, 201, 218, 306
SduI GDGCHC 2 cut(s) 201, 1186
SfaNI GCATC 3 cut(s) 380, 501, 1200
SfcI CTRYAG 1 cut(s) 442
SgrAI CRCCGGYG 1 cut(s) 677
SinI GGWCC 2 cut(s) 743, 773
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse9I AATT 7 cut(s) 182, 448, 472, 578, 697, 720, 1189
StyD4I CCNGG 4 cut(s) 10, 199, 216, 304
StyI CCWWGG 2 cut(s) 424, 907
TaaI ACNGT 7 cut(s) 53, 599, 605, 629, 786, 957, 1028
TaiI ACGT 6 cut(s) 142, 731, 948, 989, 1163, 1230
TaqI TCGA 8 cut(s) 186, 233, 237, 408, 418, 788, 888, 1275
TasI AATT 7 cut(s) 182, 448, 472, 578, 697, 720, 1189
TauI GCSGC 3 cut(s) 18, 509, 592
TfiI GAWTC 3 cut(s) 284, 420, 551
Tru1I TTAA 6 cut(s) 501, 582, 671, 689, 719, 1188
Tru9I TTAA 6 cut(s) 501, 582, 671, 689, 719, 1188
TscAI CASTG 1 cut(s) 753
TseFI GTSAC 5 cut(s) 140, 428, 946, 998, 1154
Tsp45I GTSAC 5 cut(s) 140, 428, 946, 998, 1154
TspDTI ATGAA 4 cut(s) 67, 449, 485, 1220
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 1 cut(s) 753
VpaK11BI GGWCC 2 cut(s) 743, 773
XapI RAATTY 2 cut(s) 472, 578
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 2 cut(s) 252, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.