Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Reverse (-)

72808645 .. 72809844

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCGAAACCCACCCATCGTCGAAGCAAAGCCTGCCAACGCATTGTTGATGGGCTTGAAGAACTTTGTGCCCTACTATTCTTCGCTTTTGTCATAATCGCTGGCACAATAGGCAACATATACAAACCCACCCGTCCCACCTTCTACGATAGGCCGAAACTGAGCTATTCAATCGGAGACCCCATACAAAACTGGGATGATAAACGACGAGAGTGGATTGAAGCTAATGACCCGAAATACTTATACAAAGAGCAGGTCCTCCTTGTCACCGGATCACAGCCGTCCGTTTGTAAAAACCCGGTAGGGGATCACCTTCTTCTGAGGCTCTTCAAGAACAAGGTCGACTACTGCCGAACCCACGGCCACGACATTTTCTACAACAACGCTTACTTGCATCCCAAAATGAACTCCTTGTGGGCCAAGCTTCCCGTGATCCGGTCGGCGATGGTGGCCCACCCGCAAGCCGAATGGATCTGGTGGATGGACTCGGATGCGGTGTTTACGGATATGGAGTTTGAGATTCCGTTGGACCGGTACAAGAACCACAACCTCGTGGCCCATGGTTGGCCCAATATGGTGTACGGCGATAAGGAGAACAAGAGCTGGACCGGGCTCAATACCGGGGTGTTCTTGATCCGAAACTGTCAATGGTCCATGGATCTAATCGAGGAATGGGCCTCGATGGGCCCCCAAACTCCTAACTTTGAAAAGTGGGGTAAAACGTTAATGTCGGTGTTCAAAGACAAGCCTTTCCCGCTCCCGGACGACCAATCGGCTCTGATTTATTTGCTCTTCACGCACAAGGAGAAATGGGGGGAGAAGACTTATATCGAGAACGAGTATTACTTGAATTCTTATTGGCTGGCGATGGTGAAGATGTTTGATAACCTGACCGAGAGTTACACCGAGATGGAGATGAATGACAGGGTTTTGAGGACGAGACATGCAGAGAAAGTGAATGGTTTGGAGGTTTGGGAGCGAGTGAAGTATCTTAAGGGGCGCGAGAGGAGACCATTTGTGACTCATTTTACTGGGTGTCAACCATGTAATGGAGATCATAATCCACAATATAAAGGAGATACTTGTTGGAATGAGATGAAGAGGGCTTTGAATTTTGCGGATAATCAAGTGTTAAGGAACTTTGGTTTTGTGCATCCGGATTTGAACTCCTCAGATATTTCCGATTTGCCTAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

399

Amino Acids

47.03

Weight (kDa)

7.2

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	83 - 352	2.3e-59	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AccBSI	CCGCTC	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	1002
AccIII	TCCGGA	1 cut(s)	1156
AciI	CCGC	4 cut(s)	458, 494, 755, 1118
AclI	AACGTT	1 cut(s)	722
AclWI	GGATC	6 cut(s)	280, 315, 427, 479, 628, 666
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	850, 1111
AfaI	GTAC	2 cut(s)	536, 581
AfiI	CCNNNNNNNGG	5 cut(s)	304, 435, 564, 760, 1049
AflII	CTTAAG	1 cut(s)	992
AgeI	ACCGGT	1 cut(s)	531
AgsI	TTSAA	9 cut(s)	59, 171, 221, 331, 707, 739, 850, 1111, 1165
AluBI	AGCT	4 cut(s)	165, 224, 424, 603
AluI	AGCT	4 cut(s)	165, 224, 424, 603
Alw26I	GTCTC	3 cut(s)	171, 934, 1003
AlwI	GGATC	6 cut(s)	280, 315, 427, 479, 628, 666
Aor13HI	TCCGGA	1 cut(s)	1156
AoxI	GGCC	8 cut(s)	152, 361, 417, 450, 555, 566, 675, 685
ApaI	GGGCCC	1 cut(s)	689
ApoI	RAATTY	2 cut(s)	850, 1111
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AsiGI	ACCGGT	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	1002
AsuC2I	CCSGG	4 cut(s)	299, 610, 622, 761
AsuHPI	GGTGA	3 cut(s)	259, 302, 883
AvaII	GGWCC	4 cut(s)	256, 529, 606, 651
BaeGI	GKGCMC	2 cut(s)	73, 689
BanII	GRGCYC	2 cut(s)	615, 689
BauI	CACGAG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	827
BccI	CCATC	7 cut(s)	24, 44, 439, 475, 676, 862, 904
BceAI	ACGGC	3 cut(s)	265, 376, 598
BcnI	CCSGG	4 cut(s)	299, 610, 622, 761
BcoDI	GTCTC	3 cut(s)	171, 934, 1003
BfrI	CTTAAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	244
Bme1390I	CCNGG	4 cut(s)	299, 610, 622, 761
Bme18I	GGWCC	4 cut(s)	256, 529, 606, 651
BmiI	GGNNCC	2 cut(s)	687, 688
BmrFI	CCNGG	4 cut(s)	299, 610, 622, 761
BmrI	ACTGGG	2 cut(s)	202, 1041
BmsI	GCATC	3 cut(s)	403, 481, 1162
BmuI	ACTGGG	2 cut(s)	202, 1041
BpiI	GAAGAC	1 cut(s)	827
BpuMI	CCSGG	4 cut(s)	299, 610, 622, 761
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaI	GGTCTC	2 cut(s)	171, 1003
BsaJI	CCNNGG	4 cut(s)	358, 559, 621, 654
BsaWI	WCCGGW	4 cut(s)	269, 435, 531, 1156
Bsc4I	CCNNNNNNNGG	5 cut(s)	304, 435, 564, 760, 1049
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	2 cut(s)	197, 1036
Bse8I	GATNNNNATC	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	1156
BseDI	CCNNGG	4 cut(s)	358, 559, 621, 654
BseGI	GGATG	5 cut(s)	202, 394, 486, 496, 1153
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	5 cut(s)	304, 435, 564, 760, 1049
BseMII	CTCAG	3 cut(s)	152, 311, 1185
BseNI	ACTGG	2 cut(s)	197, 1036
BseRI	GAGGAG	2 cut(s)	1021, 1159
BseSI	GKGCMC	2 cut(s)	73, 689
Bsh1236I	CGCG	1 cut(s)	1002
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	8 cut(s)	154, 363, 419, 452, 557, 568, 677, 687
BshTI	ACCGGT	1 cut(s)	531
BsiEI	CGRYCG	1 cut(s)	440
BsiSI	CCGG	8 cut(s)	270, 299, 436, 532, 609, 621, 761, 1157
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	5 cut(s)	304, 435, 564, 760, 1049
BsmAI	GTCTC	3 cut(s)	171, 934, 1003
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	8 cut(s)	154, 363, 419, 452, 557, 568, 677, 687
Bso31I	GGTCTC	2 cut(s)	171, 1003
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	3 cut(s)	73, 615, 689
Bsp13I	TCCGGA	1 cut(s)	1156
Bsp143I	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
Bsp19I	CCATGG	2 cut(s)	559, 654
BspACI	CCGC	4 cut(s)	458, 494, 755, 1118
BspANI	GGCC	8 cut(s)	154, 363, 419, 452, 557, 568, 677, 687
BspCNI	CTCAG	3 cut(s)	153, 312, 1184
BspEI	TCCGGA	1 cut(s)	1156
BspFNI	CGCG	1 cut(s)	1002
BspLI	GGNNCC	2 cut(s)	687, 688
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	6 cut(s)	280, 315, 427, 479, 628, 666
BspQI	GCTCTTC	2 cut(s)	332, 797
BspTI	CTTAAG	1 cut(s)	992
BspTNI	GGTCTC	2 cut(s)	171, 1003
BsrBI	CCGCTC	1 cut(s)	757
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	197, 1036
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	4 cut(s)	358, 559, 621, 654
BssMI	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	559, 654
Bst2BI	CACGAG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	3 cut(s)	332, 797, 1094
BstAFI	CTTAAG	1 cut(s)	992
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	34, 103, 462, 864
BstDEI	CTNAG	3 cut(s)	161, 320, 1171
BstDSI	CCRYGG	3 cut(s)	358, 559, 654
BstF5I	GGATG	5 cut(s)	202, 394, 486, 496, 1153
BstFNI	CGCG	1 cut(s)	1002
BstHHI	GCGC	1 cut(s)	1002
BstKTI	GATC	7 cut(s)	275, 310, 435, 474, 636, 661, 1057
BstMAI	GTCTC	3 cut(s)	171, 934, 1003
BstMBI	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 111, 449, 754, 796
BstNSI	RCATGY	1 cut(s)	947
BstSCI	CCNGG	4 cut(s)	297, 608, 620, 759
BstSLI	GKGCMC	2 cut(s)	73, 689
BstUI	CGCG	1 cut(s)	1002
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	2 cut(s)	471, 658
BstYI	RGATCY	2 cut(s)	471, 658
BsuRI	GGCC	8 cut(s)	154, 363, 419, 452, 557, 568, 677, 687
BtgI	CCRYGG	3 cut(s)	358, 559, 654
BtgZI	GCGATG	2 cut(s)	458, 881
BtsCI	GGATG	5 cut(s)	202, 394, 486, 496, 1153
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	4 cut(s)	34, 103, 462, 864
CfoI	GCGC	1 cut(s)	1002
Cfr10I	RCCGGY	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	535, 580
CspAI	ACCGGT	1 cut(s)	531
CviAII	CATG	4 cut(s)	560, 655, 944, 1044
CviQI	GTAC	2 cut(s)	535, 580
DdeI	CTNAG	3 cut(s)	161, 320, 1171
DpnI	GATC	7 cut(s)	274, 309, 434, 473, 635, 660, 1056
DpnII	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	3 cut(s)	332, 797, 1094
EarI	CTCTTC	3 cut(s)	332, 797, 1094
Eco130I	CCWWGG	2 cut(s)	559, 654
Eco24I	GRGCYC	2 cut(s)	615, 689
Eco31I	GGTCTC	2 cut(s)	171, 1003
Eco47I	GGWCC	4 cut(s)	256, 529, 606, 651
EcoO109I	RGGNCCY	2 cut(s)	256, 686
EcoRI	GAATTC	1 cut(s)	850
EcoT14I	CCWWGG	2 cut(s)	559, 654
EcoT38I	GRGCYC	2 cut(s)	615, 689
ErhI	CCWWGG	2 cut(s)	559, 654
FaeI	CATG	4 cut(s)	563, 658, 947, 1047
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	4 cut(s)	559, 654, 943, 1043
FauI	CCCGC	2 cut(s)	465, 762
FblI	GTMKAC	1 cut(s)	342
FokI	GGATG	5 cut(s)	209, 381, 493, 503, 1140
FriOI	GRGCYC	2 cut(s)	615, 689
GlaI	GCGC	1 cut(s)	1001
HaeIII	GGCC	8 cut(s)	154, 363, 419, 452, 557, 568, 677, 687
HapII	CCGG	8 cut(s)	270, 299, 436, 532, 609, 621, 761, 1157
HhaI	GCGC	1 cut(s)	1002
Hin1II	CATG	4 cut(s)	563, 658, 947, 1047
Hin6I	GCGC	1 cut(s)	1000
HinP1I	GCGC	1 cut(s)	1000
HincII	GTYRAC	2 cut(s)	343, 1040
HindII	GTYRAC	2 cut(s)	343, 1040
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	3 cut(s)	485, 520, 1021
HpaII	CCGG	8 cut(s)	270, 299, 436, 532, 609, 621, 761, 1157
HphI	GGTGA	3 cut(s)	259, 302, 883
Hpy166II	GTNNAC	4 cut(s)	343, 501, 580, 1040
Hpy188I	TCNGA	7 cut(s)	176, 321, 490, 638, 780, 1174, 1183
Hpy188III	TCNNGA	4 cut(s)	331, 631, 832, 1157
Hpy8I	GTNNAC	4 cut(s)	343, 501, 580, 1040
Hpy99I	CGWCG	2 cut(s)	24, 210
HpyAV	CCTTC	2 cut(s)	151, 323
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	3 cut(s)	394, 947, 1153
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 111, 449, 754, 796
HpyF3I	CTNAG	3 cut(s)	161, 320, 1171
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	4 cut(s)	563, 658, 947, 1047
HspAI	GCGC	1 cut(s)	1000
Kpn2I	TCCGGA	1 cut(s)	1156
Kzo9I	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
LguI	GCTCTTC	2 cut(s)	332, 797
LmnI	GCTCC	2 cut(s)	762, 976
LweI	GCATC	3 cut(s)	403, 481, 1162
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	3 cut(s)	265, 899, 1018
MalI	GATC	7 cut(s)	274, 309, 434, 473, 635, 660, 1056
MbiI	CCGCTC	1 cut(s)	757
MboI	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
MboII	GAAGA	8 cut(s)	71, 73, 308, 319, 784, 832, 886, 1111
MflI	RGATCY	2 cut(s)	471, 658
MhlI	GDGCHC	3 cut(s)	73, 615, 689
MluCI	AATT	2 cut(s)	850, 1111
MlyI	GAGTC	2 cut(s)	479, 1015
MmeI	TCCRAC	2 cut(s)	507, 1067
MroI	TCCGGA	1 cut(s)	1156
MseI	TTAA	3 cut(s)	725, 993, 1133
MslI	CAYNNNNRTG	1 cut(s)	908
MspCI	CTTAAG	1 cut(s)	992
MspI	CCGG	8 cut(s)	270, 299, 436, 532, 609, 621, 761, 1157
MspR9I	CCNGG	4 cut(s)	299, 610, 622, 761
MvnI	CGCG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	5 cut(s)	33, 111, 449, 754, 796
NciI	CCSGG	4 cut(s)	299, 610, 622, 761
NcoI	CCATGG	2 cut(s)	559, 654
NdeII	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
NlaIII	CATG	4 cut(s)	563, 658, 947, 1047
NlaIV	GGNNCC	2 cut(s)	687, 688
NmuCI	GTSAC	2 cut(s)	265, 1018
NspI	RCATGY	1 cut(s)	947
PciSI	GCTCTTC	2 cut(s)	332, 797
PfeI	GAWTC	1 cut(s)	520
PflMI	CCANNNNNTGG	1 cut(s)	1049
PfoI	TCCNGGA	1 cut(s)	759
PinAI	ACCGGT	1 cut(s)	531
PleI	GAGTC	2 cut(s)	479, 1015
PpsI	GAGTC	2 cut(s)	479, 1015
PpuMI	RGGWCCY	1 cut(s)	256
Psp1406I	AACGTT	1 cut(s)	722
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	687, 688
PspOMI	GGGCCC	1 cut(s)	685
PspPPI	RGGWCCY	1 cut(s)	256
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PsuI	RGATCY	2 cut(s)	471, 658
RsaI	GTAC	2 cut(s)	536, 581
RsaNI	GTAC	2 cut(s)	535, 580
RseI	CAYNNNNRTG	1 cut(s)	908
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	2 cut(s)	332, 797
SaqAI	TTAA	3 cut(s)	725, 993, 1133
Sau3AI	GATC	7 cut(s)	272, 307, 432, 471, 633, 658, 1054
SchI	GAGTC	2 cut(s)	479, 1015
ScrFI	CCNGG	4 cut(s)	299, 610, 622, 761
SduI	GDGCHC	3 cut(s)	73, 615, 689
SfaNI	GCATC	3 cut(s)	403, 481, 1162
SinI	GGWCC	4 cut(s)	256, 529, 606, 651
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	2 cut(s)	850, 1111
SsiI	CCGC	4 cut(s)	458, 494, 755, 1118
StyD4I	CCNGG	4 cut(s)	297, 608, 620, 759
StyI	CCWWGG	2 cut(s)	559, 654
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	5 cut(s)	22, 342, 666, 680, 831
TaqII	GACCGA	1 cut(s)	908
TasI	AATT	2 cut(s)	850, 1111
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	3 cut(s)	725, 993, 1133
Tru9I	TTAA	3 cut(s)	725, 993, 1133
TseFI	GTSAC	2 cut(s)	265, 1018
Tsp45I	GTSAC	2 cut(s)	265, 1018
TspDTI	ATGAA	3 cut(s)	419, 932, 1112
TspGWI	ACGGA	3 cut(s)	274, 513, 518
Van91I	CCANNNNNTGG	1 cut(s)	1049
Vha464I	CTTAAG	1 cut(s)	992
VpaK11BI	GGWCC	4 cut(s)	256, 529, 606, 651
XapI	RAATTY	2 cut(s)	850, 1111
XceI	RCATGY	1 cut(s)	947
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.