Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Forward (+)

19606917 .. 19607852

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGAAACCCACCCATCGTCGAAACAAAGCCTGCCAACGCATTGTTGATGGGCTTCAAGAACTTTGTGCCCTACTATTCTTCGCTTTTATCATGATCGCTGGCACAATAGGCAACATATACAAACCCACCCGTCCCACCTTCTACGATAGGCTGAAACTCAGCTATTCAATCGGAGACCCGATACAAAACTGGGATGATAAACGACAAAACAAGGTCGACTACTGCCGAACCCACGGCCACGACATTTTCTACAACAACGCCTTCTTGCATCCCAAAATGAACTCCTTGTGGGCCAGGCTTCCCGTGATCCGGTCCGCGATGGTGGCCCACCAGGTAGCCGAATGGATCTGGTGGAAGGACTCGGATGCGGTGTTTACGGATATGGAGTTTGAGATTCCTTTGGACAGGTACAAGAACCACAACCTTGTGGCCCATGGTTGGCCCAACATGGAGCTGGACCGGGCTCAATACCAGGGTGTTCTTGATCCGAAACTGTCAACGGTCCATGGATCTAATCGAGGAATGGGCCTCGATGGGCCCCCAAACTCCCAACTTCGAAAAGTGTGGGGTAAAACGTTAATGTCAGCGTTCAAAGACATGCCTTTCCCGCTCCCGGACGACCAATCGGCTCTGATTTATTTGCTCTTCACGAACAAGGAGAAATGGGGGGAGAAGACTTATATCGAGAACGAGTATTACTTGAATTCTTGTTGGCTGGCGATGGTGAAGATGTTTGATAACCATACCGAGAGTTACACCGAGATGGAGATGAATGACAGGGTTAATTTTGAGGACGAGACATGCATGCAGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

274

Amino Acids

32.11

Weight (kDa)

6.75

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	68 - 134	1.5e-21	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	613
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	320
AciI	CCGC	3 cut(s)	318, 371, 611
AclI	AACGTT	1 cut(s)	578
AclWI	GGATC	4 cut(s)	304, 356, 482, 520
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	706
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	312, 441, 616
AgsI	TTSAA	4 cut(s)	59, 171, 595, 706
AjnI	CCWGG	3 cut(s)	296, 333, 474
AluBI	AGCT	2 cut(s)	165, 457
AluI	AGCT	2 cut(s)	165, 457
Alw26I	GTCTC	2 cut(s)	171, 794
AlwI	GGATC	4 cut(s)	304, 356, 482, 520
AoxI	GGCC	7 cut(s)	238, 294, 327, 432, 443, 529, 539
ApaI	GGGCCC	1 cut(s)	543
ApoI	RAATTY	1 cut(s)	706
AsuC2I	CCSGG	2 cut(s)	464, 617
AsuHPI	GGTGA	1 cut(s)	739
AsuII	TTCGAA	1 cut(s)	559
AvaII	GGWCC	3 cut(s)	315, 460, 505
BaeGI	GKGCMC	2 cut(s)	73, 543
BanII	GRGCYC	2 cut(s)	469, 543
BbsI	GAAGAC	1 cut(s)	683
BccI	CCATC	6 cut(s)	24, 44, 316, 530, 718, 760
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	3 cut(s)	298, 335, 476
BcnI	CCSGG	2 cut(s)	464, 617
BcoDI	GTCTC	2 cut(s)	171, 794
Bme1390I	CCNGG	5 cut(s)	298, 335, 464, 476, 617
Bme18I	GGWCC	3 cut(s)	315, 460, 505
BmiI	GGNNCC	2 cut(s)	541, 542
BmrFI	CCNGG	5 cut(s)	298, 335, 464, 476, 617
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	280, 358
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	683
Bpu14I	TTCGAA	1 cut(s)	559
BpuMI	CCSGG	2 cut(s)	464, 617
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	235, 436, 475, 508
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 441, 616
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	298, 335, 476
BseDI	CCNNGG	4 cut(s)	235, 436, 475, 508
BseGI	GGATG	3 cut(s)	202, 271, 373
BseLI	CCNNNNNNNGG	3 cut(s)	312, 441, 616
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	197
BseSI	GKGCMC	2 cut(s)	73, 543
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	7 cut(s)	240, 296, 329, 434, 445, 531, 541
BsiSI	CCGG	3 cut(s)	313, 463, 617
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	312, 441, 616
BsmAI	GTCTC	2 cut(s)	171, 794
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	7 cut(s)	240, 296, 329, 434, 445, 531, 541
Bso31I	GGTCTC	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	559
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	73, 469, 543
Bsp143I	GATC	5 cut(s)	96, 309, 348, 487, 512
Bsp19I	CCATGG	2 cut(s)	436, 508
BspACI	CCGC	3 cut(s)	318, 371, 611
BspANI	GGCC	7 cut(s)	240, 296, 329, 434, 445, 531, 541
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	320
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	541, 542
BspPI	GGATC	4 cut(s)	304, 356, 482, 520
BspQI	GCTCTTC	1 cut(s)	653
BspT104I	TTCGAA	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	235, 436, 475, 508
BssMI	GATC	5 cut(s)	96, 309, 348, 487, 512
BssT1I	CCWWGG	2 cut(s)	436, 508
Bst2UI	CCWGG	3 cut(s)	298, 335, 476
Bst4CI	ACNGT	2 cut(s)	498, 505
Bst6I	CTCTTC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	4 cut(s)	34, 103, 720, 809
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	3 cut(s)	235, 436, 508
BstF5I	GGATG	3 cut(s)	202, 271, 373
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	5 cut(s)	99, 312, 351, 490, 515
BstMAI	GTCTC	2 cut(s)	171, 794
BstMBI	GATC	5 cut(s)	96, 309, 348, 487, 512
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 326, 610
BstNI	CCWGG	3 cut(s)	298, 335, 476
BstNSI	RCATGY	3 cut(s)	604, 807, 811
BstSCI	CCNGG	5 cut(s)	296, 333, 462, 474, 615
BstSLI	GKGCMC	2 cut(s)	73, 543
BstUI	CGCG	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	2 cut(s)	348, 512
BstYI	RGATCY	2 cut(s)	348, 512
BsuRI	GGCC	7 cut(s)	240, 296, 329, 434, 445, 531, 541
BtgI	CCRYGG	3 cut(s)	235, 436, 508
BtgZI	GCGATG	2 cut(s)	335, 737
BtsCI	GGATG	3 cut(s)	202, 271, 373
Cac8I	GCNNGC	4 cut(s)	34, 103, 720, 809
CciI	TCATGA	1 cut(s)	93
CpoI	CGGWCCG	1 cut(s)	315
CsiI	ACCWGGT	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	412
CspI	CGGWCCG	1 cut(s)	315
CviAII	CATG	7 cut(s)	94, 437, 451, 509, 601, 804, 808
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	5 cut(s)	98, 311, 350, 489, 514
DpnII	GATC	5 cut(s)	96, 309, 348, 487, 512
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	2 cut(s)	436, 508
Eco24I	GRGCYC	2 cut(s)	469, 543
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	3 cut(s)	315, 460, 505
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	3 cut(s)	296, 333, 474
EcoT14I	CCWWGG	2 cut(s)	436, 508
EcoT22I	ATGCAT	1 cut(s)	809
EcoT38I	GRGCYC	2 cut(s)	469, 543
ErhI	CCWWGG	2 cut(s)	436, 508
FaeI	CATG	7 cut(s)	97, 440, 454, 512, 604, 807, 811
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	7 cut(s)	93, 436, 450, 508, 600, 803, 807
FauI	CCCGC	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	219
FokI	GGATG	3 cut(s)	209, 258, 380
FriOI	GRGCYC	2 cut(s)	469, 543
HaeIII	GGCC	7 cut(s)	240, 296, 329, 434, 445, 531, 541
HapII	CCGG	3 cut(s)	313, 463, 617
Hin1II	CATG	7 cut(s)	97, 440, 454, 512, 604, 807, 811
HincII	GTYRAC	2 cut(s)	220, 501
HindII	GTYRAC	2 cut(s)	220, 501
HinfI	GANTC	2 cut(s)	362, 397
HpaII	CCGG	3 cut(s)	313, 463, 617
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	3 cut(s)	220, 378, 501
Hpy188I	TCNGA	4 cut(s)	176, 367, 492, 636
Hpy188III	TCNNGA	5 cut(s)	59, 94, 485, 652, 688
Hpy8I	GTNNAC	3 cut(s)	220, 378, 501
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	151, 274, 352
HpyCH4III	ACNGT	2 cut(s)	498, 505
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	3 cut(s)	271, 807, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 326, 610
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	7 cut(s)	97, 440, 454, 512, 604, 807, 811
Kzo9I	GATC	5 cut(s)	96, 309, 348, 487, 512
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	2 cut(s)	454, 618
LweI	GCATC	2 cut(s)	280, 358
MabI	ACCWGGT	1 cut(s)	333
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	755
MalI	GATC	5 cut(s)	98, 311, 350, 489, 514
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	5 cut(s)	96, 309, 348, 487, 512
MboII	GAAGA	4 cut(s)	73, 640, 688, 742
MflI	RGATCY	2 cut(s)	348, 512
MhlI	GDGCHC	3 cut(s)	73, 469, 543
MluCI	AATT	2 cut(s)	706, 787
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	3 cut(s)	515, 542, 787
Mph1103I	ATGCAT	1 cut(s)	809
MseI	TTAA	2 cut(s)	581, 786
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	3 cut(s)	313, 463, 617
MspR9I	CCNGG	5 cut(s)	298, 335, 464, 476, 617
MvaI	CCWGG	3 cut(s)	298, 335, 476
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	111, 326, 610
NciI	CCSGG	2 cut(s)	464, 617
NcoI	CCATGG	2 cut(s)	436, 508
NdeII	GATC	5 cut(s)	96, 309, 348, 487, 512
NlaIII	CATG	7 cut(s)	97, 440, 454, 512, 604, 807, 811
NlaIV	GGNNCC	2 cut(s)	541, 542
NsiI	ATGCAT	1 cut(s)	809
NspI	RCATGY	3 cut(s)	604, 807, 811
NspV	TTCGAA	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	811
PagI	TCATGA	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	615
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	578
Psp6I	CCWGG	3 cut(s)	296, 333, 474
PspGI	CCWGG	3 cut(s)	296, 333, 474
PspN4I	GGNNCC	2 cut(s)	541, 542
PspOMI	GGGCCC	1 cut(s)	539
PsrI	GAACNNNNNNTAC	2 cut(s)	683, 715
PsuI	RGATCY	2 cut(s)	348, 512
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	764
Rsr2I	CGGWCCG	1 cut(s)	315
RsrII	CGGWCCG	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	581, 786
Sau3AI	GATC	5 cut(s)	96, 309, 348, 487, 512
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	5 cut(s)	298, 335, 464, 476, 617
SduI	GDGCHC	3 cut(s)	73, 469, 543
SetI	ASST	8 cut(s)	143, 167, 219, 339, 413, 429, 459, 581
SexAI	ACCWGGT	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	280, 358
SfuI	TTCGAA	1 cut(s)	559
SinI	GGWCC	3 cut(s)	315, 460, 505
SmiMI	CAYNNNNRTG	1 cut(s)	764
SphI	GCATGC	1 cut(s)	811
Sse9I	AATT	2 cut(s)	706, 787
SsiI	CCGC	3 cut(s)	318, 371, 611
StyD4I	CCNGG	5 cut(s)	296, 333, 462, 474, 615
StyI	CCWWGG	2 cut(s)	436, 508
TaaI	ACNGT	2 cut(s)	498, 505
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	6 cut(s)	22, 219, 520, 534, 559, 687
TasI	AATT	2 cut(s)	706, 787
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	581, 786
Tru9I	TTAA	2 cut(s)	581, 786
TspDTI	ATGAA	2 cut(s)	296, 788
TspGWI	ACGGA	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	315, 460, 505
XapI	RAATTY	1 cut(s)	706
XceI	RCATGY	3 cut(s)	604, 807, 811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.