FvH4_1g17940

Galactomannan galactosyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
10425311 .. 10427194
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17940.t1

Sequence Viewer

Length: 1077 bp
ATGACAAACGTCGGCAATGGATCAATGCTAACACAAAATACGCATATATACAAAGAGCTGGTCCTCCTCGTCACCGGATCACAGCCGTCGGTTTGTAAAAACCTGATCGGGGATCACCTCCTTCTGAGGCTCTTCAAGAACAAGGTCGACTATTGTCGAATCCACGGCCACGACATTTTCTACAACGACGCCTTCTTGAAACCCCAAAAAGGAATCCTTGTGCGCCAAGCTACCTGTGATTCGGGCCGCGATGGTGCCATCCGGAAGCCGAATGGATCTGGTGGATGGACTCGGATGCTAGGACAAGAGCTGGACCGGGTTGAATACCGGGGTGTTCTTGATCCGAAACTGCCAATGGTCTATGGACCTAATGGAGGAATGGGCCTCGATGGGCCGCAGACACTGAACTTCGAAAAATGGGGCAAAACGTTGACGTCGGTGTTCAAAGACAAGCCTTTCCCGCTGCCGGACGACCAATCGGCTCTGATTTATTTGCTCTTCACTAACAAGGAGAAATGGGGGAAGAAGACTTATATCGAAAATGAATATTACTTGAATTCATATTGGTTGGCGATGGTGAAAATGTTCGATAACCTCACCGAGAGTTACACCGAGATGGAGATGGATCACAAAATTTTGAGGACTAGACATGCAGAGAAAGTGAAGGGTTTGGAGGTTTGGGAGCGAGAGAAGTATCTTAAGGGACGCGTGAGGAGACCATTTGTGACTCATTTTACGGGGTGTCAACCATGTAATGGAGAACATAATCCACAATATAAAGGAGATACTTGTTGGATTGAGATGAAGAGGGCTTTGAATTTTGCGGATAATCAAAACAAGAACTGGAAAATTTACCCGATCATAAGTCGAATCCGGAAGCTGTGTTCGGGGTTCGCCGATTGCATCTGGAGCTGGGCTCCGCGTGAAGCGAATGGCGCCGCCCACTGTGCCGCCGCGCTTGCCTCTCGGACTGTGGGTCTGAAAAGATGGGCTCACCAGCCACCACGGTCCATGATCTCTGTACTCAGGAATGACGGTCTCCCTTGTCCTCCGGTGCCGGGGGATCAAACAGAGTGA

Protein Analysis

359

Amino Acids

40.95

Weight (kDa)

9.21

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 20 - 65 9.9e-08 galactosyl transferase GMA12/MNN10 family
Glyco_transf_34 PF05637 148 - 253 2.8e-08 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 437
AccB1I GGYRCC 3 cut(s) 254, 935, 1054
AccB7I CCANNNNNTGG 1 cut(s) 755
AccI GTMKAC 1 cut(s) 147
AccII CGCG 4 cut(s) 249, 708, 922, 956
AccIII TCCGGA 2 cut(s) 261, 873
AciI CCGC 8 cut(s) 247, 395, 461, 824, 920, 939, 951, 954
AclI AACGTT 1 cut(s) 428
AclWI GGATC 7 cut(s) 28, 85, 120, 283, 335, 633, 1071
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 4 cut(s) 556, 633, 817, 849
AcyI GRCGYC 3 cut(s) 189, 434, 936
AfaI GTAC 1 cut(s) 1023
AfiI CCNNNNNNNGG 6 cut(s) 109, 209, 374, 466, 755, 1058
AflII CTTAAG 1 cut(s) 698
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 6 cut(s) 136, 199, 323, 445, 556, 817
AhdI GACNNNNNGTC 1 cut(s) 975
AloI GAACNNNNNNTCC 2 cut(s) 868, 900
AluBI AGCT 5 cut(s) 58, 230, 310, 880, 912
AluI AGCT 5 cut(s) 58, 230, 310, 880, 912
Alw26I GTCTC 2 cut(s) 709, 1043
AlwI GGATC 7 cut(s) 28, 85, 120, 283, 335, 633, 1071
AlwNI CAGNNNCTG 1 cut(s) 403
Aor13HI TCCGGA 2 cut(s) 261, 873
AoxI GGCC 4 cut(s) 166, 244, 382, 392
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 4 cut(s) 556, 633, 817, 849
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 3 cut(s) 225, 938, 958
AspS9I GGNCC 7 cut(s) 61, 244, 313, 365, 382, 392, 1008
AsuC2I CCSGG 3 cut(s) 317, 329, 1059
AsuHPI GGTGA 5 cut(s) 64, 107, 589, 589, 986
AsuII TTCGAA 1 cut(s) 411
AvaII GGWCC 4 cut(s) 61, 313, 365, 1008
BanI GGYRCC 3 cut(s) 254, 935, 1054
BanII GRGCYC 2 cut(s) 919, 994
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 450
BccI CCATC 8 cut(s) 245, 266, 279, 383, 568, 610, 616, 981
BceAI ACGGC 2 cut(s) 70, 181
BcnI CCSGG 3 cut(s) 317, 329, 1059
BcoDI GTCTC 2 cut(s) 709, 1043
BfaI CTAG 2 cut(s) 299, 645
BfoI RGCGCY 1 cut(s) 939
BfrI CTTAAG 1 cut(s) 698
BisI GCNGC 6 cut(s) 247, 395, 464, 939, 951, 954
BlsI GCNGC 6 cut(s) 248, 396, 465, 940, 952, 955
Bme1390I CCNGG 3 cut(s) 317, 329, 1059
Bme18I GGWCC 4 cut(s) 61, 313, 365, 1008
BmeRI GACNNNNNGTC 1 cut(s) 975
BmgT120I GGNCC 7 cut(s) 61, 244, 313, 365, 382, 392, 1008
BmiI GGNNCC 4 cut(s) 256, 918, 937, 1056
BmrFI CCNGG 3 cut(s) 317, 329, 1059
BmsI GCATC 2 cut(s) 285, 912
BoxI GACNNNNGTC 2 cut(s) 8, 153
BpiI GAAGAC 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 901, 933
BpmI CTGGAG 1 cut(s) 928
Bpu14I TTCGAA 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 317, 329, 1059
BsaHI GRCGYC 3 cut(s) 189, 434, 936
BsaI GGTCTC 2 cut(s) 709, 1043
BsaJI CCNNGG 4 cut(s) 163, 328, 1004, 1058
BsaWI WCCGGW 4 cut(s) 74, 261, 873, 1051
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 209, 374, 466, 755, 1058
Bse1I ACTGG 1 cut(s) 848
Bse3DI GCAATG 1 cut(s) 22
BseAI TCCGGA 2 cut(s) 261, 873
BseDI CCNNGG 4 cut(s) 163, 328, 1004, 1058
BseGI GGATG 3 cut(s) 258, 290, 300
BseLI CCNNNNNNNGG 6 cut(s) 109, 209, 374, 466, 755, 1058
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 116, 1039
BseNI ACTGG 1 cut(s) 848
BseRI GAGGAG 2 cut(s) 56, 727
BseXI GCAGC 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 912
Bsh1236I CGCG 4 cut(s) 249, 708, 922, 956
BshFI GGCC 4 cut(s) 168, 246, 384, 394
BshNI GGYRCC 3 cut(s) 254, 935, 1054
BsiSI CCGG 8 cut(s) 75, 262, 316, 328, 467, 874, 1052, 1058
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 6 cut(s) 109, 209, 374, 466, 755, 1058
BsmAI GTCTC 2 cut(s) 709, 1043
BsmFI GGGAC 1 cut(s) 717
BsnI GGCC 4 cut(s) 168, 246, 384, 394
Bso31I GGTCTC 2 cut(s) 709, 1043
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 919, 994
Bsp13I TCCGGA 2 cut(s) 261, 873
BspACI CCGC 8 cut(s) 247, 395, 461, 824, 920, 939, 951, 954
BspANI GGCC 4 cut(s) 168, 246, 384, 394
BspCNI CTCAG 2 cut(s) 117, 1038
BspEI TCCGGA 2 cut(s) 261, 873
BspFNI CGCG 4 cut(s) 249, 708, 922, 956
BspLI GGNNCC 4 cut(s) 256, 918, 937, 1056
BspPI GGATC 7 cut(s) 28, 85, 120, 283, 335, 633, 1071
BspQI GCTCTTC 2 cut(s) 137, 503
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 3 cut(s) 254, 935, 1054
BspTI CTTAAG 1 cut(s) 698
BspTNI GGTCTC 2 cut(s) 709, 1043
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 1 cut(s) 848
BssECI CCNNGG 4 cut(s) 163, 328, 1004, 1058
BssNI GRCGYC 3 cut(s) 189, 434, 936
Bst4CI ACNGT 4 cut(s) 947, 973, 1008, 1037
Bst6I CTCTTC 3 cut(s) 137, 503, 800
BstACI GRCGYC 3 cut(s) 189, 434, 936
BstAFI CTTAAG 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 2 cut(s) 125, 1025
BstDSI CCRYGG 2 cut(s) 163, 1004
BstENI CCTNNNNNAGG 1 cut(s) 372
BstF5I GGATG 3 cut(s) 258, 290, 300
BstFNI CGCG 4 cut(s) 249, 708, 922, 956
BstH2I RGCGCY 1 cut(s) 939
BstHHI GCGC 3 cut(s) 225, 938, 958
BstMAI GTCTC 2 cut(s) 709, 1043
BstMWI GCNNNNNNNGC 5 cut(s) 460, 909, 935, 947, 959
BstNSI RCATGY 1 cut(s) 653
BstPAI GACNNNNGTC 2 cut(s) 8, 153
BstSCI CCNGG 3 cut(s) 315, 327, 1057
BstUI CGCG 4 cut(s) 249, 708, 922, 956
BstV1I GCAGC 1 cut(s) 450
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 4 cut(s) 168, 246, 384, 394
BtgI CCRYGG 2 cut(s) 163, 1004
BtgZI GCGATG 2 cut(s) 264, 587
BtsCI GGATG 3 cut(s) 258, 290, 300
BtsIMutI CAGTG 2 cut(s) 401, 943
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 403
CfoI GCGC 3 cut(s) 225, 938, 958
Cfr13I GGNCC 7 cut(s) 61, 244, 313, 365, 382, 392, 1008
CseI GACGC 2 cut(s) 197, 714
Csp6I GTAC 1 cut(s) 1022
CviAII CATG 3 cut(s) 650, 750, 1012
CviQI GTAC 1 cut(s) 1022
DdeI CTNAG 2 cut(s) 125, 1025
DinI GGCGCC 1 cut(s) 937
DriI GACNNNNNGTC 1 cut(s) 975
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 137, 503, 800
Eam1105I GACNNNNNGTC 1 cut(s) 975
EarI CTCTTC 3 cut(s) 137, 503, 800
Eco24I GRGCYC 2 cut(s) 919, 994
Eco31I GGTCTC 2 cut(s) 709, 1043
Eco47I GGWCC 4 cut(s) 61, 313, 365, 1008
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 556
EcoT38I GRGCYC 2 cut(s) 919, 994
EgeI GGCGCC 1 cut(s) 937
EheI GGCGCC 1 cut(s) 937
FaeI CATG 3 cut(s) 653, 753, 1015
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 717
FatI CATG 3 cut(s) 649, 749, 1011
FauI CCCGC 1 cut(s) 468
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 6 cut(s) 247, 395, 464, 939, 951, 954
FokI GGATG 3 cut(s) 245, 297, 307
FriOI GRGCYC 2 cut(s) 919, 994
Fsp4HI GCNGC 6 cut(s) 247, 395, 464, 939, 951, 954
FspBI CTAG 2 cut(s) 299, 645
GlaI GCGC 3 cut(s) 224, 937, 957
GluI GCNGC 6 cut(s) 247, 395, 464, 939, 951, 954
GsaI CCCAGC 1 cut(s) 916
GsuI CTGGAG 1 cut(s) 928
HaeII RGCGCY 1 cut(s) 939
HaeIII GGCC 4 cut(s) 168, 246, 384, 394
HapII CCGG 8 cut(s) 75, 262, 316, 328, 467, 874, 1052, 1058
HgaI GACGC 2 cut(s) 197, 714
HhaI GCGC 3 cut(s) 225, 938, 958
Hin1I GRCGYC 3 cut(s) 189, 434, 936
Hin1II CATG 3 cut(s) 653, 753, 1015
Hin6I GCGC 3 cut(s) 223, 936, 956
HinP1I GCGC 3 cut(s) 223, 936, 956
HincII GTYRAC 3 cut(s) 148, 432, 746
HindII GTYRAC 3 cut(s) 148, 432, 746
HinfI GANTC 6 cut(s) 159, 213, 239, 289, 727, 870
HpaII CCGG 8 cut(s) 75, 262, 316, 328, 467, 874, 1052, 1058
HphI GGTGA 5 cut(s) 64, 107, 589, 589, 986
Hpy166II GTNNAC 3 cut(s) 148, 432, 746
Hpy188I TCNGA 6 cut(s) 126, 294, 345, 486, 969, 981
Hpy188III TCNNGA 7 cut(s) 136, 196, 262, 338, 874, 907, 1027
Hpy8I GTNNAC 3 cut(s) 148, 432, 746
Hpy99I CGWCG 4 cut(s) 14, 91, 191, 439
HpyAV CCTTC 3 cut(s) 131, 202, 658
HpyCH4III ACNGT 4 cut(s) 947, 973, 1008, 1037
HpyCH4IV ACGT 3 cut(s) 9, 428, 434
HpyCH4V TGCA 2 cut(s) 653, 903
HpyF10VI GCNNNNNNNGC 5 cut(s) 460, 909, 935, 947, 959
HpyF3I CTNAG 2 cut(s) 125, 1025
HpySE526I ACGT 3 cut(s) 9, 428, 434
Hsp92I GRCGYC 3 cut(s) 189, 434, 936
Hsp92II CATG 3 cut(s) 653, 753, 1015
HspAI GCGC 3 cut(s) 223, 936, 956
KasI GGCGCC 1 cut(s) 935
Kpn2I TCCGGA 2 cut(s) 261, 873
LguI GCTCTTC 2 cut(s) 137, 503
LmnI GCTCC 3 cut(s) 682, 909, 922
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 2 cut(s) 285, 912
MaeI CTAG 2 cut(s) 299, 645
MaeII ACGT 3 cut(s) 9, 428, 434
MaeIII GTNAC 3 cut(s) 70, 605, 724
MboII GAAGA 5 cut(s) 124, 490, 535, 538, 817
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 919, 994
MluCI AATT 4 cut(s) 556, 633, 817, 849
MluI ACGCGT 1 cut(s) 706
Mly113I GGCGCC 1 cut(s) 936
MlyI GAGTC 2 cut(s) 283, 721
MmeI TCCRAC 1 cut(s) 773
MroI TCCGGA 2 cut(s) 261, 873
MroXI GAANNNNTTC 1 cut(s) 584
MseI TTAA 1 cut(s) 699
MslI CAYNNNNRTG 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 698
MspI CCGG 8 cut(s) 75, 262, 316, 328, 467, 874, 1052, 1058
MspR9I CCNGG 3 cut(s) 317, 329, 1059
MvnI CGCG 4 cut(s) 249, 708, 922, 956
MwoI GCNNNNNNNGC 5 cut(s) 460, 909, 935, 947, 959
NarI GGCGCC 1 cut(s) 936
NciI CCSGG 3 cut(s) 317, 329, 1059
NlaIII CATG 3 cut(s) 653, 753, 1015
NlaIV GGNNCC 4 cut(s) 256, 918, 937, 1056
NmuCI GTSAC 2 cut(s) 70, 724
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 411
PciSI GCTCTTC 2 cut(s) 137, 503
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 159, 213, 239, 870
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 6 cut(s) 248, 396, 465, 940, 952, 955
PleI GAGTC 2 cut(s) 283, 721
PluTI GGCGCC 1 cut(s) 939
PpsI GAGTC 2 cut(s) 283, 721
PshAI GACNNNNGTC 2 cut(s) 8, 153
Psp1406I AACGTT 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 912
PspN4I GGNNCC 4 cut(s) 256, 918, 937, 1056
PspPI GGNCC 7 cut(s) 61, 244, 313, 365, 382, 392, 1008
PstNI CAGNNNCTG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 1023
RsaNI GTAC 1 cut(s) 1022
RseI CAYNNNNRTG 1 cut(s) 614
SalI GTCGAC 1 cut(s) 146
SapI GCTCTTC 2 cut(s) 137, 503
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 6 cut(s) 247, 395, 464, 939, 951, 954
Sau96I GGNCC 7 cut(s) 61, 244, 313, 365, 382, 392, 1008
SchI GAGTC 2 cut(s) 283, 721
ScrFI CCNGG 3 cut(s) 317, 329, 1059
SduI GDGCHC 2 cut(s) 919, 994
SfaNI GCATC 2 cut(s) 285, 912
SfoI GGCGCC 1 cut(s) 937
SfuI TTCGAA 1 cut(s) 411
SinI GGWCC 4 cut(s) 61, 313, 365, 1008
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
Sse9I AATT 4 cut(s) 556, 633, 817, 849
SsiI CCGC 8 cut(s) 247, 395, 461, 824, 920, 939, 951, 954
SspDI GGCGCC 1 cut(s) 935
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 299, 645
StyD4I CCNGG 3 cut(s) 315, 327, 1057
TaaI ACNGT 4 cut(s) 947, 973, 1008, 1037
TaiI ACGT 3 cut(s) 12, 431, 437
TaqI TCGA 7 cut(s) 147, 157, 387, 411, 537, 588, 868
TasI AATT 4 cut(s) 556, 633, 817, 849
TatI WGTACW 1 cut(s) 1021
TauI GCSGC 5 cut(s) 249, 397, 941, 953, 956
TfiI GAWTC 4 cut(s) 159, 213, 239, 870
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 2 cut(s) 408, 950
TseFI GTSAC 2 cut(s) 70, 724
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 2 cut(s) 70, 724
TspDTI ATGAA 3 cut(s) 549, 558, 818
TspRI CASTG 2 cut(s) 408, 950
Van91I CCANNNNNTGG 1 cut(s) 755
Vha464I CTTAAG 1 cut(s) 698
VpaK11BI GGWCC 4 cut(s) 61, 313, 365, 1008
XagI CCTNNNNNAGG 1 cut(s) 372
XapI RAATTY 4 cut(s) 556, 633, 817, 849
XceI RCATGY 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 2 cut(s) 299, 645
ZraI GACGTC 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.