MD10G1201700.v1.1

xyloglucan 6-xylosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001277
Physical Location & Seq
Reverse (-)
29972646 .. 29972960
315 bp
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UTR
Exon/CDS
Intron
MD10G1201700.v1.1.491

Sequence Viewer

Length: 315 bp
ATGGAAGACTGGGACGAGAAGCGCAAGAAGTGGCTGCTGCATCACCTTTCTTTTGCCGCTGGTGTTGGTGATCGGGTTCTTCTTGTGACAGGGTCTCAGGCAACAGCATGCAGTAACCCAGTTGGTGATCATTTGCTGCTACGGTTTTTCGAGAACAAAGTAGACTATTGCAGACTCCATGGCTATGACATCTTCTACAACAATCTGGCGTTACATCCAAAAGTGACTGGCGCTGGGCCAAGTTACCTACTCTTCGGGCTGCCATGTTGGCTCATCCTGAGGTGGAGTGGATGTGGTGGGTTGACTCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000009 GO:0000030 GO:0000032 GO:0000136 GO:0000137 GO:0000139 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0000917 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0005976 GO:0006056 GO:0006057 GO:0006080 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009272 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022402 GO:0022607 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031278 GO:0031300 GO:0031301 GO:0031410 GO:0031501 GO:0031506 GO:0031982 GO:0031984 GO:0031985 GO:0032506 GO:0032991 GO:0034645 GO:0036211 GO:0042125 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0051301 GO:0061640 GO:0070085 GO:0070589 GO:0071554 GO:0071704 GO:0071840 GO:0071852 GO:0090529 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902410 GO:1902494 GO:1903047 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00513 ko01100 map00513 map01100
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

105

Amino Acids

11.73

Weight (kDa)

7.73

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 25 - 71 3.7e-10 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 99
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 4 cut(s) 34, 37, 136, 259
AspLEI GCGC 2 cut(s) 24, 233
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 35, 80, 137
AxyI CCTNAGG 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 4 cut(s) 21, 24, 123, 246
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 268
BisI GCNGC 5 cut(s) 35, 38, 57, 137, 260
BlsI GCNGC 5 cut(s) 36, 39, 58, 138, 261
BmgT120I GGNCC 1 cut(s) 236
BmrI ACTGGG 2 cut(s) 19, 113
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 2 cut(s) 19, 113
BpiI GAAGAC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse1I ACTGG 3 cut(s) 14, 119, 232
Bse21I CCTNAGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 3 cut(s) 214, 273, 296
BseMII CTCAG 2 cut(s) 110, 269
BseNI ACTGG 3 cut(s) 14, 119, 232
BseXI GCAGC 4 cut(s) 21, 24, 123, 246
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 238
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 70, 127
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 109, 270
BspTNI GGTCTC 1 cut(s) 99
BsrI ACTGG 3 cut(s) 14, 119, 232
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 70, 127
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 96, 278, 306
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 3 cut(s) 214, 273, 296
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 2 cut(s) 24, 233
BstKTI GATC 2 cut(s) 73, 130
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 70, 127
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 21, 24, 123, 246
BstV2I GAAGAC 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 3 cut(s) 214, 273, 296
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 2 cut(s) 24, 233
Cfr13I GGNCC 1 cut(s) 236
CviAII CATG 3 cut(s) 108, 179, 264
CviJI RGCY 5 cut(s) 34, 183, 238, 259, 271
CviKI_1 RGCY 5 cut(s) 34, 183, 238, 259, 271
DdeI CTNAG 3 cut(s) 96, 278, 306
DpnI GATC 2 cut(s) 72, 129
DpnII GATC 2 cut(s) 70, 127
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 111, 182, 267
FaiI YATR 5 cut(s) 109, 180, 186, 265, 313
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 107, 178, 263
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 35, 38, 57, 137, 260
FokI GGATG 3 cut(s) 201, 260, 303
Fsp4HI GCNGC 5 cut(s) 35, 38, 57, 137, 260
GlaI GCGC 2 cut(s) 23, 232
GluI GCNGC 5 cut(s) 35, 38, 57, 137, 260
GsaI CCCAGC 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 1 cut(s) 238
HhaI GCGC 2 cut(s) 24, 233
Hin1II CATG 3 cut(s) 111, 182, 267
Hin6I GCGC 2 cut(s) 22, 231
HinP1I GCGC 2 cut(s) 22, 231
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 2 cut(s) 174, 304
HphI GGTGA 3 cut(s) 35, 80, 137
Hpy166II GTNNAC 2 cut(s) 163, 303
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 2 cut(s) 151, 277
Hpy8I GTNNAC 2 cut(s) 163, 303
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 40, 111, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 3 cut(s) 96, 278, 306
Hsp92II CATG 3 cut(s) 111, 182, 267
HspAI GCGC 2 cut(s) 22, 231
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 70, 127
LpnPI CCDG 8 cut(s) 45, 75, 83, 132, 191, 213, 219, 290
Lsp1109I GCAGC 4 cut(s) 21, 24, 123, 246
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 5 cut(s) 85, 113, 210, 223, 242
MalI GATC 2 cut(s) 72, 129
MboI GATC 2 cut(s) 70, 127
MboII GAAGA 4 cut(s) 17, 71, 184, 244
MlyI GAGTC 2 cut(s) 168, 298
MnlI CCTC 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 178
NdeII GATC 2 cut(s) 70, 127
NlaIII CATG 3 cut(s) 111, 182, 267
NmuCI GTSAC 2 cut(s) 85, 223
NspI RCATGY 1 cut(s) 111
PaeI GCATGC 1 cut(s) 111
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 5 cut(s) 36, 39, 58, 138, 261
PleI GAGTC 2 cut(s) 168, 298
PpsI GAGTC 2 cut(s) 168, 298
PspFI CCCAGC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 5 cut(s) 35, 38, 57, 137, 260
Sau3AI GATC 2 cut(s) 70, 127
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 2 cut(s) 168, 298
SetI ASST 3 cut(s) 48, 249, 284
SfaNI GCATC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 183
SphI GCATGC 1 cut(s) 111
SsiI CCGC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 150
TauI GCSGC 1 cut(s) 59
TseFI GTSAC 2 cut(s) 85, 223
TseI GCWGC 4 cut(s) 34, 37, 136, 259
Tsp45I GTSAC 2 cut(s) 85, 223
Tth111I GACNNNGTC 1 cut(s) 91
XceI RCATGY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.