pycom05g20080

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0001277
Physical Location & Seq
Reverse (-)
22965286 .. 22966614
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20080.1

Sequence Viewer

Length: 1329 bp
ATGGGTTCCTCAGAATTCTCTCTCTTCCAACCATCACCAAAACGCTCCGTTCTCCACAAAGCCCCTTCCCTAATAGCAGATGGCTTTCTCTTCGTCGGAGGTGCATCGTTGGCTCTCTCTGTTGTCTGGGCTCTCCTCACCTTCATAAACCCCACCACCATAAGCTTCGACAACATCATCACATGGAACGCGGGGCCCTGCGGACCCGACTTGCGCTCCGACCCGCCGGAGCCCACGTTCTACGACGACGAAAATCTCAGCTACGCGTTTGGGGAGCCAGTGAAGGATTGGGACTCCAAGCGCAGAGAGTGGCTGAAGCTCCACCCTTCATTCGCTGCCGGAGCCGCCGTGGACAACAGAATTCTTCTTGTGACTGGGTCACAGCCCACAGTGTGCAAAAACCCAGTTGGGGACCACTTGCAGCTGAGGCTCTTCAAGAACAAAGTTGATTACTGTAGGATTCATGGGCTCGACATATTTTACAACAATGTTTTGCTGAATCCCAAGGGTACTGGGTTTTGGGCCAAATATCCGCTTCTGAGAGCGGCTATGTTGGCCCATCCTGAGTCTGAGTGGATCTGGTGGGTCGACTCAGACGCGGTTCTCACCGACCTGGAGTTCAAGCTTCCGTTGGAGAAGTACAAAGACCACAACTTGGTCGTGCATGGGTGGTGGAACATGCTGTATGAACAGAAGAGCTGGACGAGCCTCAACGCTGGGGTTTTGTTGATAAGAACCTGTCAGTGGTCACTGAACTTGCTCGATAAGTGGGCCAGCATGGGCCCACAGGGTCCCGATCCCAAAAACTGGGGGAAGATCCAAAAGTCCTTGATCAAGGACAAAGCGTATCCAGGCTCCGACGATCAGTCGGCTCTGATTTATCTCTTGATAAAGGAGAAATCGAAATGGGCGGATAAGATTTACTTAGAGAGTGAGTACAACTTGCATGGGTACTGGCTAGGTATAGTGGACGGGCTTGATGGGATAAGCAAAGGGTACATGGAGATTGACAGGGAGGTGGATTTGCTGAGGAGGAGGCATGCAGAGAAGGTCAGCTTGTTTTATGGTCAAATGAGAGAAAAGTACATGAGAGAGAAAGGGATTTGGAGAGAGAATAAGAGGAGGCCATTTGTGACGCATTTCACAGGGTGTGAGCCCTGCAGTGGAGAGCACAATGGAATGTACACTTGGGAGGCTTGTTGGAATGGGATGCAAAAAGCTTTGAATTTTGCAGATAATCAAGTGCTTAGAAGATTTGGGTTTGTTCATCCAGACCTACTCAATTCTTCTTGGGTTTCTCCTTTGCCATTTGATTTCCCAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

443

Amino Acids

50.73

Weight (kDa)

6.64

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 118 - 389 3.2e-52 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 655, 807
AccBSI CCGCTC 1 cut(s) 545
AccI GTMKAC 1 cut(s) 588
AccII CGCG 3 cut(s) 191, 266, 599
AciI CCGC 8 cut(s) 191, 201, 224, 345, 533, 545, 599, 911
AclWI GGATC 3 cut(s) 584, 791, 811
AcsI RAATTY 3 cut(s) 14, 360, 1225
AcuI CTGAAG 1 cut(s) 335
AdeI CACNNNGTG 2 cut(s) 393, 1149
AfaI GTAC 7 cut(s) 511, 641, 938, 953, 998, 1085, 1184
AfiI CCNNNNNNNGG 5 cut(s) 409, 655, 744, 807, 1163
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 3 cut(s) 436, 622, 1225
AhdI GACNNNNNGTC 1 cut(s) 865
AjnI CCWGG 2 cut(s) 612, 850
AjuI GAANNNNNNNTTGG 2 cut(s) 1171, 1203
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 8 cut(s) 165, 261, 319, 424, 625, 699, 1056, 1220
AluI AGCT 8 cut(s) 165, 261, 319, 424, 625, 699, 1056, 1220
Alw21I GWGCWC 1 cut(s) 1173
AlwI GGATC 3 cut(s) 584, 791, 811
AoxI GGCC 6 cut(s) 194, 522, 555, 771, 781, 1124
ApaI GGGCCC 2 cut(s) 198, 785
ApeKI GCWGC 2 cut(s) 335, 421
ApoI RAATTY 3 cut(s) 14, 360, 1225
AspLEI GCGC 2 cut(s) 216, 303
AsuHPI GGTGA 3 cut(s) 27, 130, 598
AvaII GGWCC 3 cut(s) 203, 412, 791
BaeGI GKGCMC 2 cut(s) 198, 785
BanII GRGCYC 6 cut(s) 133, 198, 234, 471, 785, 1158
Bbv12I GWGCWC 1 cut(s) 1173
BbvCI CCTCAGC 2 cut(s) 425, 1028
BbvI GCAGC 2 cut(s) 322, 433
BccI CCATC 4 cut(s) 40, 74, 567, 974
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 2 cut(s) 614, 852
BciVI GTATCC 1 cut(s) 858
BclI TGATCA 1 cut(s) 831
BfaI CTAG 1 cut(s) 959
BfmI CTRYAG 2 cut(s) 454, 1159
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 4 cut(s) 336, 345, 422, 546
BlsI GCNGC 4 cut(s) 337, 346, 423, 547
Bme1390I CCNGG 2 cut(s) 614, 852
Bme18I GGWCC 3 cut(s) 203, 412, 791
BmeRI GACNNNNNGTC 1 cut(s) 865
BmrFI CCNGG 2 cut(s) 614, 852
BmrI ACTGGG 4 cut(s) 384, 398, 522, 817
BmsI GCATC 3 cut(s) 113, 1200, 1312
BmuI ACTGGG 4 cut(s) 384, 398, 522, 817
BpmI CTGGAG 1 cut(s) 635
Bpu10I CCTNAGC 2 cut(s) 425, 1028
BsaJI CCNNGG 2 cut(s) 348, 504
BsaXI ACNNNNNCTCC 6 cut(s) 200, 221, 230, 251, 333, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 409, 655, 744, 807, 1163
Bse1I ACTGG 6 cut(s) 278, 379, 404, 517, 812, 959
BseBI CCWGG 2 cut(s) 614, 852
BseDI CCNNGG 2 cut(s) 348, 504
BseGI GGATG 3 cut(s) 559, 1215, 1267
BseLI CCNNNNNNNGG 5 cut(s) 409, 655, 744, 807, 1163
BseMII CTCAG 8 cut(s) 24, 271, 416, 530, 555, 561, 606, 1019
BseNI ACTGG 6 cut(s) 278, 379, 404, 517, 812, 959
BseRI GAGGAG 4 cut(s) 125, 1045, 1048, 1135
BseSI GKGCMC 2 cut(s) 198, 785
BseXI GCAGC 2 cut(s) 322, 433
BseYI CCCAGC 1 cut(s) 716
Bsh1236I CGCG 3 cut(s) 191, 266, 599
BshFI GGCC 6 cut(s) 196, 524, 557, 773, 783, 1126
BsiHKAI GWGCWC 1 cut(s) 1173
BsiSI CCGG 2 cut(s) 227, 339
BslFI GGGAC 3 cut(s) 305, 425, 777
BslI CCNNNNNNNGG 5 cut(s) 409, 655, 744, 807, 1163
BsmFI GGGAC 3 cut(s) 305, 425, 777
BsnI GGCC 6 cut(s) 196, 524, 557, 773, 783, 1126
Bsp120I GGGCCC 2 cut(s) 194, 781
Bsp1286I GDGCHC 7 cut(s) 133, 198, 234, 471, 785, 1158, 1173
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 5 cut(s) 576, 796, 816, 831, 862
BspACI CCGC 8 cut(s) 191, 201, 224, 345, 533, 545, 599, 911
BspANI GGCC 6 cut(s) 196, 524, 557, 773, 783, 1126
BspCNI CTCAG 8 cut(s) 23, 270, 417, 531, 556, 562, 605, 1020
BspFNI CGCG 3 cut(s) 191, 266, 599
BspMAI CTGCAG 1 cut(s) 1163
BspPI GGATC 3 cut(s) 584, 791, 811
BspQI GCTCTTC 2 cut(s) 437, 689
BsrBI CCGCTC 1 cut(s) 545
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 6 cut(s) 278, 379, 404, 517, 812, 959
BssECI CCNNGG 2 cut(s) 348, 504
BssMI GATC 5 cut(s) 576, 796, 816, 831, 862
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 614, 852
Bst4CI ACNGT 2 cut(s) 391, 455
Bst6I CTCTTC 4 cut(s) 29, 95, 437, 689
BstAUI TGTACA 1 cut(s) 1182
BstC8I GCNNGC 2 cut(s) 775, 1041
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 559, 1215, 1267
BstFNI CGCG 3 cut(s) 191, 266, 599
BstHHI GCGC 2 cut(s) 216, 303
BstKTI GATC 5 cut(s) 579, 799, 819, 834, 865
BstMBI GATC 5 cut(s) 576, 796, 816, 831, 862
BstMWI GCNNNNNNNGC 6 cut(s) 110, 341, 344, 427, 554, 705
BstNI CCWGG 2 cut(s) 614, 852
BstNSI RCATGY 2 cut(s) 682, 1043
BstSCI CCNGG 2 cut(s) 612, 850
BstSFI CTRYAG 2 cut(s) 454, 1159
BstSLI GKGCMC 2 cut(s) 198, 785
BstUI CGCG 3 cut(s) 191, 266, 599
BstV1I GCAGC 2 cut(s) 322, 433
BstX2I RGATCY 2 cut(s) 576, 816
BstYI RGATCY 2 cut(s) 576, 816
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 6 cut(s) 196, 524, 557, 773, 783, 1126
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 559, 1215, 1267
BtsI GCAGTG 1 cut(s) 1168
BtsIMutI CAGTG 5 cut(s) 285, 396, 749, 749, 1168
Cac8I GCNNGC 2 cut(s) 775, 1041
CfoI GCGC 2 cut(s) 216, 303
CseI GACGC 2 cut(s) 605, 1144
Csp6I GTAC 7 cut(s) 510, 640, 937, 952, 997, 1084, 1183
CviAII CATG 9 cut(s) 183, 464, 665, 679, 778, 947, 1000, 1040, 1087
CviQI GTAC 7 cut(s) 510, 640, 937, 952, 997, 1084, 1183
DpnI GATC 5 cut(s) 578, 798, 818, 833, 864
DpnII GATC 5 cut(s) 576, 796, 816, 831, 862
DraIII CACNNNGTG 2 cut(s) 393, 1149
DriI GACNNNNNGTC 1 cut(s) 865
Eam1104I CTCTTC 4 cut(s) 29, 95, 437, 689
Eam1105I GACNNNNNGTC 1 cut(s) 865
EarI CTCTTC 4 cut(s) 29, 95, 437, 689
EciI GGCGGA 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 6 cut(s) 133, 198, 234, 471, 785, 1158
Eco47I GGWCC 3 cut(s) 203, 412, 791
Eco57I CTGAAG 1 cut(s) 335
EcoO109I RGGNCCY 3 cut(s) 194, 195, 791
EcoRI GAATTC 2 cut(s) 14, 360
EcoRII CCWGG 2 cut(s) 612, 850
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 6 cut(s) 133, 198, 234, 471, 785, 1158
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 9 cut(s) 186, 467, 668, 682, 781, 950, 1003, 1043, 1090
FalI AAGNNNNNCTT 4 cut(s) 908, 940, 1040, 1072
FaqI GGGAC 3 cut(s) 305, 425, 777
FatI CATG 9 cut(s) 182, 463, 664, 678, 777, 946, 999, 1039, 1086
FauI CCCGC 2 cut(s) 184, 231
FbaI TGATCA 1 cut(s) 831
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 4 cut(s) 336, 345, 422, 546
FokI GGATG 3 cut(s) 546, 1222, 1254
FriOI GRGCYC 6 cut(s) 133, 198, 234, 471, 785, 1158
Fsp4HI GCNGC 4 cut(s) 336, 345, 422, 546
FspBI CTAG 1 cut(s) 959
GlaI GCGC 2 cut(s) 215, 302
GluI GCNGC 4 cut(s) 336, 345, 422, 546
GsaI CCCAGC 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 6 cut(s) 196, 524, 557, 773, 783, 1126
HapII CCGG 2 cut(s) 227, 339
HgaI GACGC 2 cut(s) 605, 1144
HhaI GCGC 2 cut(s) 216, 303
Hin1II CATG 9 cut(s) 186, 467, 668, 682, 781, 950, 1003, 1043, 1090
Hin6I GCGC 2 cut(s) 214, 301
HinP1I GCGC 2 cut(s) 214, 301
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 3 cut(s) 163, 623, 1218
HinfI GANTC 5 cut(s) 293, 460, 499, 566, 590
HpaII CCGG 2 cut(s) 227, 339
HphI GGTGA 3 cut(s) 27, 130, 598
Hpy166II GTNNAC 4 cut(s) 352, 589, 970, 1185
Hpy188I TCNGA 8 cut(s) 13, 98, 220, 540, 571, 595, 859, 876
Hpy188III TCNNGA 5 cut(s) 436, 563, 794, 886, 1271
Hpy8I GTNNAC 4 cut(s) 352, 589, 970, 1185
Hpy99I CGWCG 4 cut(s) 98, 248, 251, 863
HpyAV CCTTC 5 cut(s) 75, 151, 277, 336, 1042
HpyCH4III ACNGT 2 cut(s) 391, 455
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 9 cut(s) 104, 396, 421, 664, 946, 1043, 1161, 1213, 1232
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 341, 344, 427, 554, 705
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 9 cut(s) 186, 467, 668, 682, 781, 950, 1003, 1043, 1090
HspAI GCGC 2 cut(s) 214, 301
KflI GGGWCCC 1 cut(s) 791
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 5 cut(s) 576, 796, 816, 831, 862
LguI GCTCTTC 2 cut(s) 437, 689
LmnI GCTCC 7 cut(s) 50, 221, 229, 274, 324, 341, 860
Lsp1109I GCAGC 2 cut(s) 322, 433
LweI GCATC 3 cut(s) 113, 1200, 1312
MaeI CTAG 1 cut(s) 959
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 4 cut(s) 370, 378, 747, 1132
MalI GATC 5 cut(s) 578, 798, 818, 833, 864
MbiI CCGCTC 1 cut(s) 545
MboI GATC 5 cut(s) 576, 796, 816, 831, 862
MboII GAAGA 8 cut(s) 16, 82, 356, 424, 706, 826, 1263, 1278
MflI RGATCY 2 cut(s) 576, 816
MhlI GDGCHC 7 cut(s) 133, 198, 234, 471, 785, 1158, 1173
MluCI AATT 4 cut(s) 14, 360, 1225, 1282
MluI ACGCGT 1 cut(s) 264
MlyI GAGTC 3 cut(s) 287, 575, 584
MmeI TCCRAC 6 cut(s) 52, 76, 243, 612, 882, 1181
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 2 cut(s) 227, 339
MspR9I CCNGG 2 cut(s) 614, 852
MvaI CCWGG 2 cut(s) 614, 852
MvnI CGCG 3 cut(s) 191, 266, 599
MwoI GCNNNNNNNGC 6 cut(s) 110, 341, 344, 427, 554, 705
NdeII GATC 5 cut(s) 576, 796, 816, 831, 862
NlaIII CATG 9 cut(s) 186, 467, 668, 682, 781, 950, 1003, 1043, 1090
NmuCI GTSAC 4 cut(s) 370, 378, 747, 1132
NspI RCATGY 2 cut(s) 682, 1043
PaeI GCATGC 1 cut(s) 1043
PciSI GCTCTTC 2 cut(s) 437, 689
PfeI GAWTC 2 cut(s) 460, 499
PflFI GACNNNGTC 1 cut(s) 376
PflMI CCANNNNNTGG 2 cut(s) 655, 807
PkrI GCNGC 4 cut(s) 337, 346, 423, 547
PleI GAGTC 3 cut(s) 287, 574, 584
PpsI GAGTC 3 cut(s) 287, 574, 584
PpuMI RGGWCCY 1 cut(s) 791
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 2 cut(s) 612, 850
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 612, 850
PspOMI GGGCCC 2 cut(s) 194, 781
PspPPI RGGWCCY 1 cut(s) 791
PstI CTGCAG 1 cut(s) 1163
PsuI RGATCY 2 cut(s) 576, 816
PsyI GACNNNGTC 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 7 cut(s) 511, 641, 938, 953, 998, 1085, 1184
RsaNI GTAC 7 cut(s) 510, 640, 937, 952, 997, 1084, 1183
SalI GTCGAC 1 cut(s) 587
SapI GCTCTTC 2 cut(s) 437, 689
SatI GCNGC 4 cut(s) 336, 345, 422, 546
Sau3AI GATC 5 cut(s) 576, 796, 816, 831, 862
SchI GAGTC 3 cut(s) 287, 575, 584
ScrFI CCNGG 2 cut(s) 614, 852
SduI GDGCHC 7 cut(s) 133, 198, 234, 471, 785, 1158, 1173
SfaNI GCATC 3 cut(s) 113, 1200, 1312
SfcI CTRYAG 2 cut(s) 454, 1159
SinI GGWCC 3 cut(s) 203, 412, 791
SphI GCATGC 1 cut(s) 1043
Sse9I AATT 4 cut(s) 14, 360, 1225, 1282
SsiI CCGC 8 cut(s) 191, 201, 224, 345, 533, 545, 599, 911
SspMI CTAG 1 cut(s) 959
StyD4I CCNGG 2 cut(s) 612, 850
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 391, 455
TaiI ACGT 1 cut(s) 239
TaqI TCGA 5 cut(s) 168, 471, 588, 762, 902
TasI AATT 4 cut(s) 14, 360, 1225, 1282
TatI WGTACW 4 cut(s) 639, 936, 1083, 1182
TauI GCSGC 2 cut(s) 347, 548
TfiI GAWTC 2 cut(s) 460, 499
TscAI CASTG 5 cut(s) 285, 396, 749, 756, 1168
TseFI GTSAC 4 cut(s) 370, 378, 747, 1132
TseI GCWGC 2 cut(s) 335, 421
Tsp45I GTSAC 4 cut(s) 370, 378, 747, 1132
TspDTI ATGAA 5 cut(s) 133, 318, 452, 702, 1256
TspGWI ACGGA 2 cut(s) 37, 618
TspRI CASTG 5 cut(s) 285, 396, 749, 756, 1168
Tth111I GACNNNGTC 1 cut(s) 376
Van91I CCANNNNNTGG 2 cut(s) 655, 807
VpaK11BI GGWCC 3 cut(s) 203, 412, 791
XapI RAATTY 3 cut(s) 14, 360, 1225
XceI RCATGY 2 cut(s) 682, 1043
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.