Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Reverse (-)

23722783 .. 23723339

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACAGGCAGCCACCTTGATGAAGTGAAGCGCATGGTGTCCAAGTACAGGAAGCCGATGGTGAAACTCGGTGGAGAATCCTTGACTATTTCTCAAGAGGCCAAGTGGATTTGGTGGGTTGACTCGGACGCATTGTTTACCGACATGGAGTTCAAGCTCCCATTAGAGAAGTGCAAGAGCCACAACCTCATCATTCATGGCTGGGCTCACCTGGCTTTACCAAAGCCGGTGACCGTTCTGGGGTCAAGTTTTACAGGTCTGGTTTGGCTTACCACCACCGTCTTCGCCTTCCCCCCTTCTCTCCCCCTCTTCCTCTCATGGCTTCTCTTCCTTTTCTTCATCTCTAATCGCTCCGGCGATATCGGCGAGAACTCGACTTCAGCTTCGTCGGAGGTGGAGGAAGGAGGGCGTCGAAGTGTAAGGAGGTTCGGCGGTCGGGACTTGGAGGATTTCTTGGGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051069 GO:0051070 GO:0061458 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

155

Amino Acids

17.35

Weight (kDa)

6.91

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	33 - 53	1.1e-06	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	409
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	48, 240
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	157, 383
AluI	AGCT	2 cut(s)	157, 383
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	73, 200, 241
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 240
Bse118I	RCCGGY	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	48, 240
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	227, 354
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	48, 240
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	235, 280
Bst6I	CTCTTC	2 cut(s)	314, 332
BstACI	GRCGYC	1 cut(s)	409
BstEII	GGTNACC	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 363
BstNI	CCWGG	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	101
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	226
CseI	GACGC	2 cut(s)	137, 398
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	34, 145, 197, 318
CviQI	GTAC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	314, 332
EarI	CTCTTC	2 cut(s)	314, 332
Eco24I	GRGCYC	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	4 cut(s)	37, 148, 200, 321
FaiI	YATR	4 cut(s)	35, 146, 198, 319
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	4 cut(s)	33, 144, 196, 317
Fnu4HI	GCNGC	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	10
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	10
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	227, 354
HgaI	GACGC	2 cut(s)	137, 398
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	409
Hin1II	CATG	4 cut(s)	37, 148, 200, 321
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	77, 122
HpaII	CCGG	2 cut(s)	227, 354
HphI	GGTGA	3 cut(s)	73, 200, 241
Hpy166II	GTNNAC	2 cut(s)	121, 138
Hpy188I	TCNGA	2 cut(s)	127, 391
Hpy188III	TCNNGA	2 cut(s)	95, 437
Hpy8I	GTNNAC	2 cut(s)	121, 138
Hpy99I	CGWCG	2 cut(s)	391, 414
HpyAV	CCTTC	3 cut(s)	298, 306, 395
HpyCH4III	ACNGT	2 cut(s)	235, 280
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 363
Hsp92I	GRCGYC	1 cut(s)	409
Hsp92II	CATG	4 cut(s)	37, 148, 200, 321
HspAI	GCGC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	162, 356
LpnPI	CCDG	9 cut(s)	34, 187, 197, 224, 224, 240, 240, 245, 367
Lsp1109I	GCAGC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	274, 301, 319, 328
MhlI	GDGCHC	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	9 cut(s)	91, 197, 317, 323, 385, 391, 398, 417, 439
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	2 cut(s)	227, 354
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	212, 363
NlaIII	CATG	4 cut(s)	37, 148, 200, 321
NmuCI	GTSAC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	210
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	18, 159, 189, 213, 259, 385, 396, 428
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	235, 280
TaqI	TCGA	2 cut(s)	374, 412
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	36, 185, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.