Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Forward (+)

20321124 .. 20321642

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG201400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGCCCCCAAACTCCCAACTTCGAAAAGTCGGGTAAAACGTTAATGTCGGTGTTCAAAGACGAGCCTTTCCCGCTCCCGGACGACCAATCGGCTCTGATTTATTTGCTCTTCACGAACAAGGAGAAATGGGGGGAGAAGACTTATATCAAGAACGAGTATTACTTGAATTCTTATTGGCTGGCGATGGTGAAGATGTTTGATAACCTGACCGAGAGTTACACCGAGATGGAGATGAATGACAGGGTTTTGAGGACGAGACATGCAGAGAAAGTGAATGGTTTGGAGGTTTGGGAGCGAGAGAAGTATCTTAAGGGGGGCGAGAGGAGACCATTTGTGACTCATTTTACTGGGTGTCAACCATGTAATGGAGAGTATAATCCACAATATAAAGGAGATGCTTGTTGGAATGAGATGAAGAGGGCTTTGAACTTTGCGGATAATCAAGTGTTAAGGAACTTTGGTTTTGTGCATCCGGATTTGAACTCCTCAGATATTTCCGATTTGCCTAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

172

Amino Acids

20.22

Weight (kDa)

5.69

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	26 - 124	1.8e-08	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	475
AciI	CCGC	2 cut(s)	74, 437
AclI	AACGTT	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	79, 368
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	58, 169, 430, 484
Alw26I	GTCTC	2 cut(s)	253, 322
Aor13HI	TCCGGA	1 cut(s)	475
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	4, 5
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	202
AsuII	TTCGAA	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	146
BccI	CCATC	2 cut(s)	181, 223
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	253, 322
BfaI	CTAG	1 cut(s)	517
BfrI	CTTAAG	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	2 cut(s)	6, 7
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	388, 481
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 368
Bse1I	ACTGG	1 cut(s)	355
BseAI	TCCGGA	1 cut(s)	475
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	79, 368
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	340, 478
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	80, 476
BslI	CCNNNNNNNGG	2 cut(s)	79, 368
BsmAI	GTCTC	2 cut(s)	253, 322
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	1 cut(s)	322
Bsp119I	TTCGAA	1 cut(s)	24
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	475
BspACI	CCGC	2 cut(s)	74, 437
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	503
BspEI	TCCGGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	6, 7
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	116, 413
BstAFI	CTTAAG	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	253, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	4, 5
CviAII	CATG	2 cut(s)	263, 363
CviJI	RGCY	5 cut(s)	6, 67, 95, 181, 425
CviKI_1	RGCY	5 cut(s)	6, 67, 95, 181, 425
DdeI	CTNAG	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	116, 413
EarI	CTCTTC	2 cut(s)	116, 413
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	266, 366
FaiI	YATR	5 cut(s)	147, 264, 364, 378, 390
FatI	CATG	2 cut(s)	262, 362
FauI	CCCGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	517
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	80, 476
Hin1II	CATG	2 cut(s)	266, 366
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	80, 476
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	99, 493, 502
Hpy188III	TCNNGA	3 cut(s)	115, 151, 476
Hpy8I	GTNNAC	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	266, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	266, 366
Kpn2I	TCCGGA	1 cut(s)	475
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	81, 295
LpnPI	CCDG	6 cut(s)	93, 167, 221, 229, 336, 489
LweI	GCATC	2 cut(s)	388, 481
MaeI	CTAG	1 cut(s)	517
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	218, 337
MbiI	CCGCTC	1 cut(s)	76
MboII	GAAGA	4 cut(s)	103, 151, 205, 430
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	246, 280, 318, 414, 499
MroI	TCCGGA	1 cut(s)	475
MseI	TTAA	3 cut(s)	44, 312, 452
MslI	CAYNNNNRTG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	2 cut(s)	80, 476
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	80
NlaIII	CATG	2 cut(s)	266, 366
NlaIV	GGNNCC	2 cut(s)	6, 7
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	78
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	6, 7
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
RseI	CAYNNNNRTG	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	44, 312, 452
Sau96I	GGNCC	2 cut(s)	4, 5
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	44, 210, 291
SfaNI	GCATC	2 cut(s)	388, 481
SfuI	TTCGAA	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	74, 437
SspMI	CTAG	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	44, 312, 452
Tru9I	TTAA	3 cut(s)	44, 312, 452
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	251, 431
Van91I	CCANNNNNTGG	1 cut(s)	368
Vha464I	CTTAAG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.