Rh5AG188200

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001277
Physical Location & Seq
Forward (+)
21617880 .. 21620298
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG188200.1

Sequence Viewer

Length: 963 bp
ATGGCTTTATCTCTGGTTTGGGCACTAATCTCCTTCATAAACCCCAGCTCAACCTTCGACACCATCATCACCTACGACAACACCCCTCAAGGCCCTGACTTGGGCTACGACCCGCCAGAGCCGACGTTCTACGACGACCCGAATCTCAGCTACTCAGTTGGGGAAGCCATAAAAAACTGGGATGAGAAGCGCAGAGAGTGGCTGAGGGTTCACCCTTCTTTTGGTGTTGGTGATAGGATTGTTCTTGTTACCGGTTCTCAGCCTTCGGTGTGTAAAAACCCGGTTGGGGATCATTTACAGTTGAGACTGTTCAAGAACAAAGTAGACTATTGCAGGTTTCATGGCTGTGAAGTGTTCTACAACAATGTTCTTCTGGACCCTAAAGGAACCGGTTTCTGGGCCAAGTACCCGATTCTCAGAGCCGCCATGGTGGCCCATCCAGAGGCAGAGTGGATCTACTGGGTCGACTCGGACGCCATTTTCACCGACATGGAGTTCAAGGTGCCATTGGAGAAGTACAAGGATCATAACTTGATTGTTCATGGGTGGTGGCACATGGTGAAGCAGCAGAGCTGGACTAGCGTCAATGCTGGTGTGTTCTTGATTAGGAACTGCCAGTGGTCCTTGGAGTTCATCGATGAATGGGCCAGCATGGGCCCACAAGGCCCGGCCAAAGAGAAGTGGGGGGAGACCCAGAAATCATTGCTCAAGGACAAGCTGTATCCAGGGTCAGATGACCAGTCTGCTCTTATCTACCTTCTGCTGAAGCAGAGGCAGAAATGGGGGGACAAGGTTTACTTGGAGAGTGAGTACAATTTCCAAAGCTACTGGCTTGGGGTGGTGGATGGCCTTGATAACATCACCAAAGGGTACGTGGAGGTTGAAAGAGAAATGGGGAAACTGAGGAGGAGGCATGCTGAGAAGTGGGGCTTGAGCGTCGGCATTACTCATGCTAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

320

Amino Acids

37.02

Weight (kDa)

6.01

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 79 - 285 1.9e-46 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 502
AccI GTMKAC 2 cut(s) 324, 465
AciI CCGC 2 cut(s) 113, 423
AclWI GGATC 3 cut(s) 297, 461, 531
AcoI YGGCCR 1 cut(s) 669
AcuI CTGAAG 1 cut(s) 785
AcyI GRCGYC 1 cut(s) 474
AdeI CACNNNGTG 1 cut(s) 559
AfaI GTAC 4 cut(s) 407, 518, 812, 872
AfiI CCNNNNNNNGG 6 cut(s) 100, 101, 221, 286, 396, 442
AgeI ACCGGT 2 cut(s) 251, 389
AgsI TTSAA 3 cut(s) 313, 499, 884
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 5 cut(s) 48, 150, 573, 718, 825
AluI AGCT 5 cut(s) 48, 150, 573, 718, 825
Alw26I GTCTC 2 cut(s) 298, 683
AlwI GGATC 3 cut(s) 297, 461, 531
AoxI GGCC 8 cut(s) 91, 399, 432, 645, 655, 664, 669, 847
ApaI GGGCCC 1 cut(s) 659
ApeKI GCWGC 1 cut(s) 565
AsiGI ACCGGT 2 cut(s) 251, 389
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 9 cut(s) 92, 376, 399, 433, 621, 645, 655, 656, 665
AsuC2I CCSGG 2 cut(s) 281, 668
AsuHPI GGTGA 6 cut(s) 61, 203, 242, 475, 571, 853
AvaII GGWCC 2 cut(s) 376, 621
BaeGI GKGCMC 2 cut(s) 25, 659
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 659
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 577
BccI CCATC 3 cut(s) 71, 444, 839
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 732
BcnI CCSGG 2 cut(s) 281, 668
BcoDI GTCTC 2 cut(s) 298, 683
BfaI CTAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 324
BfuI GTATCC 1 cut(s) 732
BglI GCCNNNNNGGC 2 cut(s) 431, 663
BisI GCNGC 2 cut(s) 423, 566
BlsI GCNGC 2 cut(s) 424, 567
Bme1390I CCNGG 3 cut(s) 281, 668, 726
Bme18I GGWCC 2 cut(s) 376, 621
BmgT120I GGNCC 9 cut(s) 92, 376, 399, 433, 621, 645, 655, 656, 665
BmiI GGNNCC 4 cut(s) 378, 388, 504, 657
BmrFI CCNGG 3 cut(s) 281, 668, 726
BmrI ACTGGG 2 cut(s) 187, 469
BmuI ACTGGG 2 cut(s) 187, 469
BoxI GACNNNNGTC 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 203
BpuEI CTTGAG 3 cut(s) 72, 692, 952
BpuMI CCSGG 2 cut(s) 281, 668
Bsa29I ATCGAT 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 874
BsaHI GRCGYC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 3 cut(s) 426, 624, 725
BsaWI WCCGGW 2 cut(s) 251, 389
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 101, 221, 286, 396, 442
Bse118I RCCGGY 2 cut(s) 251, 389
Bse1I ACTGG 5 cut(s) 182, 464, 616, 739, 833
Bse3DI GCAATG 1 cut(s) 701
BseBI CCWGG 1 cut(s) 726
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 3 cut(s) 426, 624, 725
BseGI GGATG 3 cut(s) 187, 436, 850
BseLI CCNNNNNNNGG 6 cut(s) 100, 101, 221, 286, 396, 442
BseMI GCAATG 1 cut(s) 701
BseMII CTCAG 7 cut(s) 160, 168, 194, 272, 430, 893, 909
BseNI ACTGG 5 cut(s) 182, 464, 616, 739, 833
BseRI GAGGAG 2 cut(s) 919, 922
BseSI GKGCMC 2 cut(s) 25, 659
BseXI GCAGC 1 cut(s) 577
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 8 cut(s) 93, 401, 434, 647, 657, 666, 671, 849
BshNI GGYRCC 1 cut(s) 502
BshTI ACCGGT 2 cut(s) 251, 389
BshVI ATCGAT 1 cut(s) 636
BsiSI CCGG 4 cut(s) 252, 281, 390, 668
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 6 cut(s) 100, 101, 221, 286, 396, 442
BsmAI GTCTC 2 cut(s) 298, 683
BsmFI GGGAC 1 cut(s) 800
BsnI GGCC 8 cut(s) 93, 401, 434, 647, 657, 666, 671, 849
Bso31I GGTCTC 1 cut(s) 683
Bsp120I GGGCCC 1 cut(s) 655
Bsp1286I GDGCHC 2 cut(s) 25, 659
Bsp143I GATC 3 cut(s) 289, 453, 523
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 2 cut(s) 113, 423
BspANI GGCC 8 cut(s) 93, 401, 434, 647, 657, 666, 671, 849
BspCNI CTCAG 7 cut(s) 159, 167, 195, 271, 429, 894, 910
BspDI ATCGAT 1 cut(s) 636
BspLI GGNNCC 4 cut(s) 378, 388, 504, 657
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 297, 461, 531
BspT107I GGYRCC 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 701
BsrFI RCCGGY 2 cut(s) 251, 389
BsrI ACTGG 5 cut(s) 182, 464, 616, 739, 833
BssAI RCCGGY 2 cut(s) 251, 389
BssECI CCNNGG 3 cut(s) 426, 624, 725
BssMI GATC 3 cut(s) 289, 453, 523
BssNI GRCGYC 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 426, 624
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 300, 309
BstACI GRCGYC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 874
BstC8I GCNNGC 2 cut(s) 649, 915
BstDEI CTNAG 8 cut(s) 146, 154, 203, 258, 416, 902, 918, 954
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 187, 436, 850
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 292, 456, 526
BstMAI GTCTC 2 cut(s) 298, 683
BstMBI GATC 3 cut(s) 289, 453, 523
BstMWI GCNNNNNNNGC 3 cut(s) 431, 579, 663
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 917
BstPAI GACNNNNGTC 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 279, 666, 724
BstSLI GKGCMC 2 cut(s) 25, 659
BstV1I GCAGC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
Bsu15I ATCGAT 1 cut(s) 636
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 8 cut(s) 93, 401, 434, 647, 657, 666, 671, 849
BsuTUI ATCGAT 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 3 cut(s) 187, 436, 850
BtsIMutI CAGTG 1 cut(s) 623
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 649, 915
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 2 cut(s) 251, 389
Cfr13I GGNCC 9 cut(s) 92, 376, 399, 433, 621, 645, 655, 656, 665
ClaI ATCGAT 1 cut(s) 636
CseI GACGC 3 cut(s) 482, 571, 925
Csp6I GTAC 4 cut(s) 406, 517, 811, 871
CspAI ACCGGT 2 cut(s) 251, 389
CviAII CATG 8 cut(s) 341, 427, 490, 542, 556, 652, 914, 950
CviQI GTAC 4 cut(s) 406, 517, 811, 871
DdeI CTNAG 8 cut(s) 146, 154, 203, 258, 416, 902, 918, 954
DpnI GATC 3 cut(s) 291, 455, 525
DpnII GATC 3 cut(s) 289, 453, 523
DraIII CACNNNGTG 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 426, 624
Eco24I GRGCYC 1 cut(s) 659
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 376, 621
Eco57I CTGAAG 1 cut(s) 785
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 2 cut(s) 426, 624
EcoT38I GRGCYC 1 cut(s) 659
ErhI CCWWGG 2 cut(s) 426, 624
FaeI CATG 8 cut(s) 344, 430, 493, 545, 559, 655, 917, 953
FalI AAGNNNNNCTT 4 cut(s) 782, 814, 914, 946
FaqI GGGAC 1 cut(s) 800
FatI CATG 8 cut(s) 340, 426, 489, 541, 555, 651, 913, 949
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 2 cut(s) 324, 465
Fnu4HI GCNGC 2 cut(s) 423, 566
FokI GGATG 3 cut(s) 194, 423, 857
FriOI GRGCYC 1 cut(s) 659
Fsp4HI GCNGC 2 cut(s) 423, 566
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 423, 566
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 8 cut(s) 93, 401, 434, 647, 657, 666, 671, 849
HapII CCGG 4 cut(s) 252, 281, 390, 668
HgaI GACGC 3 cut(s) 482, 571, 925
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 8 cut(s) 344, 430, 493, 545, 559, 655, 917, 953
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 3 cut(s) 142, 412, 467
HpaII CCGG 4 cut(s) 252, 281, 390, 668
HphI GGTGA 6 cut(s) 61, 203, 242, 475, 571, 853
Hpy166II GTNNAC 4 cut(s) 211, 325, 466, 796
Hpy188I TCNGA 3 cut(s) 419, 472, 733
Hpy188III TCNNGA 4 cut(s) 313, 374, 440, 601
Hpy8I GTNNAC 4 cut(s) 211, 325, 466, 796
Hpy99I CGWCG 3 cut(s) 127, 137, 941
HpyAV CCTTC 5 cut(s) 43, 64, 225, 273, 767
HpyCH4III ACNGT 2 cut(s) 300, 309
HpyCH4IV ACGT 2 cut(s) 125, 873
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 579, 663
HpyF3I CTNAG 8 cut(s) 146, 154, 203, 258, 416, 902, 918, 954
HpySE526I ACGT 2 cut(s) 125, 873
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 8 cut(s) 344, 430, 493, 545, 559, 655, 917, 953
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 289, 453, 523
Lsp1109I GCAGC 1 cut(s) 577
MaeI CTAG 1 cut(s) 579
MaeII ACGT 2 cut(s) 125, 873
MaeIII GTNAC 1 cut(s) 247
MalI GATC 3 cut(s) 291, 455, 525
MboI GATC 3 cut(s) 289, 453, 523
MboII GAAGA 1 cut(s) 362
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 25, 659
MluCI AATT 1 cut(s) 814
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 8 cut(s) 96, 198, 436, 765, 871, 897, 900, 903
MseI TTAA 1 cut(s) 961
MslI CAYNNNNRTG 2 cut(s) 345, 488
MspI CCGG 4 cut(s) 252, 281, 390, 668
MspR9I CCNGG 3 cut(s) 281, 668, 726
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 3 cut(s) 431, 579, 663
NciI CCSGG 2 cut(s) 281, 668
NcoI CCATGG 1 cut(s) 426
NdeII GATC 3 cut(s) 289, 453, 523
NlaIII CATG 8 cut(s) 344, 430, 493, 545, 559, 655, 917, 953
NlaIV GGNNCC 4 cut(s) 378, 388, 504, 657
NspI RCATGY 1 cut(s) 917
PaeI GCATGC 1 cut(s) 917
PfeI GAWTC 2 cut(s) 142, 412
PinAI ACCGGT 2 cut(s) 251, 389
PkrI GCNGC 2 cut(s) 424, 567
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 874
PshAI GACNNNNGTC 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 4 cut(s) 378, 388, 504, 657
PspOMI GGGCCC 1 cut(s) 655
PspPI GGNCC 9 cut(s) 92, 376, 399, 433, 621, 645, 655, 656, 665
PsuI RGATCY 1 cut(s) 453
RsaI GTAC 4 cut(s) 407, 518, 812, 872
RsaNI GTAC 4 cut(s) 406, 517, 811, 871
RseI CAYNNNNRTG 2 cut(s) 345, 488
SalI GTCGAC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 961
SatI GCNGC 2 cut(s) 423, 566
Sau3AI GATC 3 cut(s) 289, 453, 523
Sau96I GGNCC 9 cut(s) 92, 376, 399, 433, 621, 645, 655, 656, 665
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 3 cut(s) 281, 668, 726
SduI GDGCHC 2 cut(s) 25, 659
SfiI GGCCNNNNNGGCC 1 cut(s) 663
SinI GGWCC 2 cut(s) 376, 621
SmiMI CAYNNNNRTG 2 cut(s) 345, 488
SmlI CTYRAG 3 cut(s) 87, 707, 931
SmoI CTYRAG 3 cut(s) 87, 707, 931
SphI GCATGC 1 cut(s) 917
Sse9I AATT 1 cut(s) 814
SsiI CCGC 2 cut(s) 113, 423
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 3 cut(s) 279, 666, 724
StyI CCWWGG 2 cut(s) 426, 624
TaaI ACNGT 2 cut(s) 300, 309
TaiI ACGT 2 cut(s) 128, 876
TaqI TCGA 3 cut(s) 57, 465, 636
TasI AATT 1 cut(s) 814
TatI WGTACW 2 cut(s) 516, 810
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 2 cut(s) 142, 412
Tru1I TTAA 1 cut(s) 961
Tru9I TTAA 1 cut(s) 961
TscAI CASTG 1 cut(s) 623
TseI GCWGC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 25, 329, 530, 622, 654
TspRI CASTG 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 376, 621
XceI RCATGY 1 cut(s) 917
XcmI CCANNNNNNNNNTGG 2 cut(s) 447, 871
XmiI GTMKAC 2 cut(s) 324, 465
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.