MD10G1201800.v1.1

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001277
Physical Location & Seq
Reverse (-)
29976847 .. 29978175
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1201800.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGGTTCCTCAGAATTCTCTCTCTTCCAACAATCACCAAAACGATCCGCTTTCCACAAAGCCCCTTCCCTAATAGCAGATGGCTTTCTCTTCGTCGGCGGTGCATCATTGGCTCTCTCTGTGGTCTGGGCTCTCCTAACCTTCATCAACCCCACCACCATTAGCTTGGACAGCATCATCGCCTGGAACGCGGGTCCATGCGGACCCGACTTGAGCTCCGACTCGCCGGAGCCCACGTTCTACGACGACGAAAATCTCAGCTACGCGTTTGGGGAGCCAGTGAAGGATTGGGACTCGAAGCGCAGAGAGTGGCTGAAGCTGCACCCTTCATTCGCCGCCGGAGCCGCCGCGGATAACAGGGTTCTTCTGGTAACTGGGTCCCAGCCCACCGTGTGCAAAAACCCAGTTGGTGACCACTTACAGCTGAGGTTCTTCAAGAACAAAGTTGATTACTGTAGGATTCATGGGCACGACATATTTTACAACAGTGTTTTGTTGGATCCCAATGGTACTGGATTTTGGGCCAAATACCCGCTATTGAGGGCGGCTATGTTGGCTCATCCCGAGTCCGAGTGGATCTGGTGGGTCGACTCAGACGCGGTTCTCACCGACATGGAGTTCAAGCTTCCGTTGGAGAGGTACAAAGACCATAACTTGGTCGTGCATGGGTGGTGGAACATGGTGTATGAGCAGAAGAGCTGGACGAGCCTCAACGCTGGGGTTTTGTTGATAAGAAACTGTCAGTGGTCATTGAGCTTGCTGGATAAGTGGGCCAGCATGGGTCCACAGGGTCCGAATCCTGAAAAATGGGGGAAGATCCAAAAGTCCCTGATCAAGGACAAGGCGTATCCGGGCTCTGACGATCAGTCGGCTCTGATTTATCTCCTGATCAAGGAGAAGTCGAGATGGGCGGCTAAGATTTACTTAGAGAGCGAGTACAACTTGCATGGATACTGGCTGGGGATAGTGGACGGGCTTGATGGGATAAGCAAAGGGTACATGGAGGTTGACAGGGAGGTGGATTTGCTGAGGAGGAGGCATGCTGAGAAGGTCAGCTTGTTTTATGGTCAAATGAGAGAGAAGTACATGAGAGAGAGAGGGATTTGGAGAGAGAATAAGAGGAGGCCATTTGTGACACATTTCACAGGGTGTGAGCCGTGCAGTGGAGAGCACAATGGAATGTACACTTGGGAGGCTTGTTGGAATGGGATGCAAAAAGCTTTGAATTTTGCAGATAATCAAGTGCTTAGGAGATTTGGGTTTGTTCATCCAGACCTACTCAATTCATCTTTGGTTTCTCCTTTGCCATTTGATTTCCCAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

443

Amino Acids

50.53

Weight (kDa)

6.36

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 118 - 389 5.1e-55 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 655
AccI GTMKAC 1 cut(s) 588
AccII CGCG 4 cut(s) 191, 266, 350, 599
AclWI GGATC 5 cut(s) 39, 494, 507, 584, 811
AcsI RAATTY 2 cut(s) 14, 1225
AcuI CTGAAG 1 cut(s) 335
AdeI CACNNNGTG 2 cut(s) 393, 1149
AfaI GTAC 6 cut(s) 511, 641, 938, 998, 1085, 1184
AfiI CCNNNNNNNGG 4 cut(s) 655, 835, 892, 1163
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 3 cut(s) 436, 622, 1225
AhdI GACNNNNNGTC 1 cut(s) 865
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 1171, 1203
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
Alw21I GWGCWC 2 cut(s) 218, 1173
AlwI GGATC 5 cut(s) 39, 494, 507, 584, 811
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 3 cut(s) 522, 771, 1124
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 14, 1225
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 7 cut(s) 194, 203, 378, 522, 771, 782, 791
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 3 cut(s) 27, 422, 598
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 5 cut(s) 194, 203, 378, 782, 791
BaeGI GKGCMC 1 cut(s) 471
BamHI GGATCC 1 cut(s) 499
BanII GRGCYC 4 cut(s) 133, 218, 234, 857
Bbv12I GWGCWC 2 cut(s) 218, 1173
BbvCI CCTCAGC 2 cut(s) 425, 1028
BbvI GCAGC 1 cut(s) 306
BccI CCATC 3 cut(s) 74, 900, 974
BceAI ACGGC 1 cut(s) 1141
BciT130I CCWGG 1 cut(s) 184
BciVI GTATCC 2 cut(s) 858, 944
BclI TGATCA 2 cut(s) 831, 888
BcnI CCSGG 1 cut(s) 852
BfmI CTRYAG 1 cut(s) 454
BfuI GTATCC 2 cut(s) 858, 944
BisI GCNGC 6 cut(s) 320, 336, 345, 348, 546, 912
BlsI GCNGC 6 cut(s) 321, 337, 346, 349, 547, 913
Bme1390I CCNGG 2 cut(s) 184, 852
Bme18I GGWCC 5 cut(s) 194, 203, 378, 782, 791
BmeRI GACNNNNNGTC 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 7 cut(s) 194, 203, 378, 522, 771, 782, 791
BmrFI CCNGG 2 cut(s) 184, 852
BmrI ACTGGG 2 cut(s) 384, 398
BmsI GCATC 4 cut(s) 113, 183, 1200, 1312
BmuI ACTGGG 2 cut(s) 384, 398
Bpu10I CCTNAGC 3 cut(s) 425, 1028, 1247
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 852
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 4 cut(s) 200, 221, 230, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 655, 835, 892, 1163
Bse1I ACTGG 5 cut(s) 278, 379, 404, 517, 959
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 3 cut(s) 559, 1215, 1267
BseLI CCNNNNNNNGG 4 cut(s) 655, 835, 892, 1163
BseMII CTCAG 6 cut(s) 24, 271, 416, 606, 1019, 1035
BseNI ACTGG 5 cut(s) 278, 379, 404, 517, 959
BseRI GAGGAG 3 cut(s) 1045, 1048, 1135
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 1 cut(s) 306
BseYI CCCAGC 3 cut(s) 381, 716, 958
BsgI GTGCAG 2 cut(s) 305, 1180
Bsh1236I CGCG 4 cut(s) 191, 266, 350, 599
BshFI GGCC 3 cut(s) 524, 773, 1126
BsiHKAI GWGCWC 2 cut(s) 218, 1173
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 3 cut(s) 227, 339, 851
BslFI GGGAC 3 cut(s) 305, 364, 811
BslI CCNNNNNNNGG 4 cut(s) 655, 835, 892, 1163
BsmFI GGGAC 3 cut(s) 305, 364, 811
BsnI GGCC 3 cut(s) 524, 773, 1126
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 6 cut(s) 133, 218, 234, 471, 857, 1173
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
BspANI GGCC 3 cut(s) 524, 773, 1126
BspCNI CTCAG 6 cut(s) 23, 270, 417, 605, 1020, 1036
BspFNI CGCG 4 cut(s) 191, 266, 350, 599
BspPI GGATC 5 cut(s) 39, 494, 507, 584, 811
BspQI GCTCTTC 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 5 cut(s) 278, 379, 404, 517, 959
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 4 cut(s) 391, 455, 488, 740
Bst6I CTCTTC 3 cut(s) 29, 95, 689
BstAUI TGTACA 1 cut(s) 1182
BstC8I GCNNGC 3 cut(s) 758, 775, 1041
BstDEI CTNAG 9 cut(s) 10, 257, 425, 592, 915, 925, 1028, 1044, 1247
BstDSI CCRYGG 1 cut(s) 348
BstEII GGTNACC 1 cut(s) 410
BstENI CCTNNNNNAGG 2 cut(s) 833, 890
BstF5I GGATG 3 cut(s) 559, 1215, 1267
BstFNI CGCG 4 cut(s) 191, 266, 350, 599
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 7 cut(s) 47, 502, 579, 819, 834, 865, 891
BstMBI GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
BstMWI GCNNNNNNNGC 8 cut(s) 110, 171, 188, 319, 341, 344, 554, 705
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 1043
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 182, 850
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 471
BstUI CGCG 4 cut(s) 191, 266, 350, 599
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 3 cut(s) 499, 576, 816
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 3 cut(s) 499, 576, 816
BsuI GTATCC 2 cut(s) 858, 944
BsuRI GGCC 3 cut(s) 524, 773, 1126
BtgI CCRYGG 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 3 cut(s) 559, 1215, 1267
BtsI GCAGTG 1 cut(s) 1168
BtsIMutI CAGTG 4 cut(s) 285, 493, 749, 1168
Cac8I GCNNGC 3 cut(s) 758, 775, 1041
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 7 cut(s) 194, 203, 378, 522, 771, 782, 791
Cfr42I CCGCGG 1 cut(s) 351
CseI GACGC 1 cut(s) 605
Csp6I GTAC 6 cut(s) 510, 640, 937, 997, 1084, 1183
CviQI GTAC 6 cut(s) 510, 640, 937, 997, 1084, 1183
DdeI CTNAG 9 cut(s) 10, 257, 425, 592, 915, 925, 1028, 1044, 1247
DpnI GATC 7 cut(s) 46, 501, 578, 818, 833, 864, 890
DpnII GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
DraIII CACNNNGTG 2 cut(s) 393, 1149
DriI GACNNNNNGTC 1 cut(s) 865
Eam1104I CTCTTC 3 cut(s) 29, 95, 689
Eam1105I GACNNNNNGTC 1 cut(s) 865
EarI CTCTTC 3 cut(s) 29, 95, 689
Ecl136II GAGCTC 1 cut(s) 216
Eco24I GRGCYC 4 cut(s) 133, 218, 234, 857
Eco47I GGWCC 5 cut(s) 194, 203, 378, 782, 791
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 563
Eco91I GGTNACC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 216
EcoNI CCTNNNNNAGG 2 cut(s) 833, 890
EcoO109I RGGNCCY 1 cut(s) 378
EcoO65I GGTNACC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 4 cut(s) 133, 218, 234, 857
FalI AAGNNNNNCTT 4 cut(s) 908, 940, 1040, 1072
FaqI GGGAC 3 cut(s) 305, 364, 811
FauI CCCGC 2 cut(s) 184, 540
FbaI TGATCA 2 cut(s) 831, 888
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 6 cut(s) 320, 336, 345, 348, 546, 912
FokI GGATG 3 cut(s) 546, 1222, 1254
FriOI GRGCYC 4 cut(s) 133, 218, 234, 857
Fsp4HI GCNGC 6 cut(s) 320, 336, 345, 348, 546, 912
GlaI GCGC 1 cut(s) 302
GluI GCNGC 6 cut(s) 320, 336, 345, 348, 546, 912
GsaI CCCAGC 3 cut(s) 385, 720, 962
HaeIII GGCC 3 cut(s) 524, 773, 1126
HapII CCGG 3 cut(s) 227, 339, 851
HgaI GACGC 1 cut(s) 605
HhaI GCGC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 2 cut(s) 589, 1009
HindII GTYRAC 2 cut(s) 589, 1009
HindIII AAGCTT 2 cut(s) 623, 1218
HinfI GANTC 6 cut(s) 221, 293, 460, 566, 590, 796
HpaII CCGG 3 cut(s) 227, 339, 851
HphI GGTGA 3 cut(s) 27, 422, 598
Hpy166II GTNNAC 5 cut(s) 589, 785, 970, 1009, 1185
Hpy188I TCNGA 7 cut(s) 13, 220, 571, 595, 795, 859, 876
Hpy188III TCNNGA 6 cut(s) 436, 563, 800, 886, 903, 1271
Hpy8I GTNNAC 5 cut(s) 589, 785, 970, 1009, 1185
Hpy99I CGWCG 3 cut(s) 98, 248, 251
HpyAV CCTTC 5 cut(s) 75, 151, 277, 336, 1042
HpyCH4III ACNGT 4 cut(s) 391, 455, 488, 740
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 8 cut(s) 104, 322, 396, 664, 946, 1161, 1213, 1232
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 171, 188, 319, 341, 344, 554, 705
HpyF3I CTNAG 9 cut(s) 10, 257, 425, 592, 915, 925, 1028, 1044, 1247
HpySE526I ACGT 1 cut(s) 236
HspAI GCGC 1 cut(s) 301
KflI GGGWCCC 1 cut(s) 378
Ksp22I TGATCA 2 cut(s) 831, 888
KspI CCGCGG 1 cut(s) 351
Kzo9I GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
LguI GCTCTTC 1 cut(s) 689
LmnI GCTCC 4 cut(s) 221, 229, 274, 341
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 4 cut(s) 113, 183, 1200, 1312
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 370, 410, 1132
MalI GATC 7 cut(s) 46, 501, 578, 818, 833, 864, 890
MboI GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
MboII GAAGA 6 cut(s) 16, 82, 356, 424, 706, 826
MflI RGATCY 3 cut(s) 499, 576, 816
MhlI GDGCHC 6 cut(s) 133, 218, 234, 471, 857, 1173
MluCI AATT 3 cut(s) 14, 1225, 1282
MluI ACGCGT 1 cut(s) 264
MlyI GAGTC 4 cut(s) 215, 287, 575, 584
MmeI TCCRAC 5 cut(s) 52, 243, 477, 612, 1181
MslI CAYNNNNRTG 1 cut(s) 611
MspA1I CMGCKG 2 cut(s) 350, 424
MspI CCGG 3 cut(s) 227, 339, 851
MspR9I CCNGG 2 cut(s) 184, 852
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 4 cut(s) 191, 266, 350, 599
MwoI GCNNNNNNNGC 8 cut(s) 110, 171, 188, 319, 341, 344, 554, 705
NciI CCSGG 1 cut(s) 852
NdeII GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
NmuCI GTSAC 2 cut(s) 410, 1132
NspI RCATGY 1 cut(s) 1043
PaeI GCATGC 1 cut(s) 1043
PciSI GCTCTTC 1 cut(s) 689
PfeI GAWTC 2 cut(s) 460, 796
PflMI CCANNNNNTGG 1 cut(s) 655
PkrI GCNGC 6 cut(s) 321, 337, 346, 349, 547, 913
PleI GAGTC 4 cut(s) 215, 287, 574, 584
PpsI GAGTC 4 cut(s) 215, 287, 574, 584
PpuMI RGGWCCY 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 410
PspFI CCCAGC 3 cut(s) 381, 716, 958
PspGI CCWGG 1 cut(s) 182
PspPI GGNCC 7 cut(s) 194, 203, 378, 522, 771, 782, 791
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 3 cut(s) 499, 576, 816
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 6 cut(s) 511, 641, 938, 998, 1085, 1184
RsaNI GTAC 6 cut(s) 510, 640, 937, 997, 1084, 1183
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 218
SacII CCGCGG 1 cut(s) 351
SalI GTCGAC 1 cut(s) 587
SapI GCTCTTC 1 cut(s) 689
SatI GCNGC 6 cut(s) 320, 336, 345, 348, 546, 912
Sau3AI GATC 7 cut(s) 44, 499, 576, 816, 831, 862, 888
Sau96I GGNCC 7 cut(s) 194, 203, 378, 522, 771, 782, 791
SchI GAGTC 4 cut(s) 215, 287, 575, 584
ScrFI CCNGG 2 cut(s) 184, 852
SduI GDGCHC 6 cut(s) 133, 218, 234, 471, 857, 1173
SfaNI GCATC 4 cut(s) 113, 183, 1200, 1312
SfcI CTRYAG 1 cut(s) 454
Sfr303I CCGCGG 1 cut(s) 351
SgrBI CCGCGG 1 cut(s) 351
SinI GGWCC 5 cut(s) 194, 203, 378, 782, 791
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 1043
Sse9I AATT 3 cut(s) 14, 1225, 1282
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 182, 850
TaaI ACNGT 4 cut(s) 391, 455, 488, 740
TaiI ACGT 1 cut(s) 239
TaqI TCGA 3 cut(s) 296, 588, 902
TasI AATT 3 cut(s) 14, 1225, 1282
TatI WGTACW 3 cut(s) 936, 1083, 1182
TauI GCSGC 5 cut(s) 338, 347, 350, 548, 914
TfiI GAWTC 2 cut(s) 460, 796
TscAI CASTG 4 cut(s) 285, 493, 749, 1168
TseFI GTSAC 2 cut(s) 410, 1132
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 2 cut(s) 410, 1132
TspDTI ATGAA 5 cut(s) 133, 318, 452, 1256, 1275
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 4 cut(s) 285, 493, 749, 1168
Van91I CCANNNNNTGG 1 cut(s) 655
VpaK11BI GGWCC 5 cut(s) 194, 203, 378, 782, 791
XagI CCTNNNNNAGG 2 cut(s) 833, 890
XapI RAATTY 2 cut(s) 14, 1225
XceI RCATGY 1 cut(s) 1043
XcmI CCANNNNNNNNNTGG 2 cut(s) 163, 285
XmiI GTMKAC 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.