MD10G1201600.v1.1

xyloglucan 6-xylosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001277
Physical Location & Seq
Reverse (-)
29972103 .. 29972570
468 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1201600.v1.1.491

Sequence Viewer

Length: 468 bp
ATGAGATATACGACAAGCACAGCTGGACAAGTGTCAATAAAAGTGTTCTTGATACGCAACTGCCAGTGGTCCATGAACCTCATAGAGGCATGGGTCATCATGGGGCCACAGACCCCATACTATGAAAGATGGGCCCGAAAGCAAAATTCATTGCTCAAAGACAAGCAAATTTCAAATTCAGACGATCAATCGGGTCTGATTTATCTTCTAATAACACAGAAAGAAAGATGGGCAAACAAGAATTATGTAGAAAATGATTACTACCTACACCGATACTGGTTGGCAACTGTGGATGATCTTGACAGCACCACCAAACGATACATGGAGATTGAAAGAGAGGTGGACATGTTAAGGAGGAGACACGCGGAGAAAGTGAACCAGTTCTATGGAACTATGAGAGAGCAACATGTGAAGGATAAGGGCTACTGGAAAGATTATCTCAGAAGGCCAACTTCATTTATGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000009 GO:0000030 GO:0000032 GO:0000136 GO:0000137 GO:0000139 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0000917 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0005976 GO:0006056 GO:0006057 GO:0006080 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009272 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022402 GO:0022607 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031278 GO:0031300 GO:0031301 GO:0031410 GO:0031501 GO:0031506 GO:0031982 GO:0031984 GO:0031985 GO:0032506 GO:0032991 GO:0034645 GO:0036211 GO:0042125 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0051301 GO:0061640 GO:0070085 GO:0070589 GO:0071554 GO:0071704 GO:0071840 GO:0071852 GO:0090529 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902410 GO:1902494 GO:1903047 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00513 ko01100 map00513 map01100
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

156

Amino Acids

18.93

Weight (kDa)

9.23

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 7 - 112 1.6e-09 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 365
AciI CCGC 1 cut(s) 365
AcsI RAATTY 3 cut(s) 145, 168, 175
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 2 cut(s) 345, 406
AgsI TTSAA 2 cut(s) 174, 332
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 352
AoxI GGCC 3 cut(s) 104, 132, 446
ApaI GGGCCC 1 cut(s) 136
ApoI RAATTY 3 cut(s) 145, 168, 175
Asp700I GAANNNNTTC 1 cut(s) 380
AspS9I GGNCC 4 cut(s) 69, 104, 132, 133
AvaII GGWCC 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 136
BccI CCATC 2 cut(s) 123, 222
BcoDI GTCTC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 4 cut(s) 69, 104, 132, 133
BmiI GGNNCC 2 cut(s) 105, 134
BoxI GACNNNNGTC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 4 cut(s) 64, 281, 379, 431
Bse3DI GCAATG 1 cut(s) 149
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 4 cut(s) 64, 281, 379, 431
BseRI GAGGAG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 3 cut(s) 106, 134, 448
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 3 cut(s) 106, 134, 448
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 184, 295
BspACI CCGC 1 cut(s) 365
BspANI GGCC 3 cut(s) 106, 134, 448
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 105, 134
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 4 cut(s) 64, 281, 379, 431
BssMI GATC 2 cut(s) 184, 295
Bst4CI ACNGT 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 440
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 2 cut(s) 187, 298
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 184, 295
BstNSI RCATGY 2 cut(s) 349, 410
BstPAI GACNNNNGTC 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 1 cut(s) 365
BstXI CCANNNNNNTGG 1 cut(s) 386
BsuRI GGCC 3 cut(s) 106, 134, 448
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 71
Cfr13I GGNCC 4 cut(s) 69, 104, 132, 133
CviAII CATG 6 cut(s) 73, 90, 100, 322, 346, 407
CviJI RGCY 5 cut(s) 23, 106, 134, 423, 448
CviKI_1 RGCY 5 cut(s) 23, 106, 134, 423, 448
DdeI CTNAG 1 cut(s) 440
DpnI GATC 2 cut(s) 186, 297
DpnII GATC 2 cut(s) 184, 295
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 6 cut(s) 76, 93, 103, 325, 349, 410
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FatI CATG 6 cut(s) 72, 89, 99, 321, 345, 406
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 136
HaeIII GGCC 3 cut(s) 106, 134, 448
Hin1II CATG 6 cut(s) 76, 93, 103, 325, 349, 410
Hpy166II GTNNAC 2 cut(s) 343, 376
Hpy188I TCNGA 3 cut(s) 181, 198, 443
Hpy188III TCNNGA 2 cut(s) 49, 299
Hpy8I GTNNAC 2 cut(s) 343, 376
HpyAV CCTTC 2 cut(s) 406, 438
HpyCH4III ACNGT 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 440
Hsp92II CATG 6 cut(s) 76, 93, 103, 325, 349, 410
Kzo9I GATC 2 cut(s) 184, 295
LpnPI CCDG 5 cut(s) 9, 77, 262, 392, 412
MalI GATC 2 cut(s) 186, 297
MboI GATC 2 cut(s) 184, 295
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 4 cut(s) 145, 168, 175, 241
MnlI CCTC 4 cut(s) 79, 89, 331, 348
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 23
MvnI CGCG 1 cut(s) 365
NdeII GATC 2 cut(s) 184, 295
NlaIII CATG 6 cut(s) 76, 93, 103, 325, 349, 410
NlaIV GGNNCC 2 cut(s) 105, 134
NspI RCATGY 2 cut(s) 349, 410
PciI ACATGT 2 cut(s) 345, 406
PdmI GAANNNNTTC 1 cut(s) 380
PscI ACATGT 2 cut(s) 345, 406
PshAI GACNNNNGTC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 105, 134
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 4 cut(s) 69, 104, 132, 133
PvuII CAGCTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 2 cut(s) 184, 295
Sau96I GGNCC 4 cut(s) 69, 104, 132, 133
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 25, 81, 267, 342
SinI GGWCC 1 cut(s) 69
Sse9I AATT 4 cut(s) 145, 168, 175, 241
SsiI CCGC 1 cut(s) 365
TaaI ACNGT 1 cut(s) 289
TasI AATT 4 cut(s) 145, 168, 175, 241
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 89, 138, 138, 444
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 3 cut(s) 145, 168, 175
XceI RCATGY 2 cut(s) 349, 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.