Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Forward (+)

20365177 .. 20369679

Gene Structure 4503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACCTAATCGAGGAATGGGCCTCGATGGCCCCCCAAACTCCCAACTTCGAAAAGTGGGGTAAAACGTTAATGTCGGTGTTCAAAGACAAGCCTTTCCCGCTCCCGGACGACCAATCGGCTCTGATTTATTTGCTCTTCACGAACAAGGAGAAATGGGGGGAGAAGACTTATATCGAGAACGAGTATTACTTGAATTCTTATTGGCTGGCGATGGTGAAGATGTTTGATAACCTGACCGAGAGTTACACCGAGATGGAGATGAATGACAGGGTTTTGGGGACGAGACATGCAGAGAAAGTGAATGGTTTGGAGGTTTGGGAGCGAGAGAAGTGTCTTAAGGGGCGCGAGAGGAGACCATTTGTGACTCATTTTACTGGGTGTCAACCATGTAATGGAGAGCATAATCCACAATATAAAGGAGATGCTTGTTGGAATGAGATGAAGAGGGCTTTGAACTTTGCGGATAATCAAGTGTTAAGGAACTTTGGTTTTGTGCATCCGGATTTGAACTCCTCAGATATTTCCGATTTGCCTAAATGGATGAGTAACCTGAACATATTGGACTTTGCTCCATTGGGAACAACTAGCTCTGGATATCACAGGTGGGTTCGTGATGTCCGCCAGCATCTCAAGGCCGATGGAATCCTGAATACGATTCTCGATCCTAGCCAGGACGTGCTAACTGTTGAGCAAGCTCAAGCTTTGGTAGCAAATAGAGCAGCCTTAGAGGCAAATAAGTCAAAAGGCATCATCCTAATGATTCATCATATGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

260

Amino Acids

30.14

Weight (kDa)

5.53

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	24 - 133	2.7e-09	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	103
AccII	CGCG	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	3 cut(s)	101, 464, 622
AclI	AACGTT	1 cut(s)	68
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	196
AfiI	CCNNNNNNNGG	3 cut(s)	13, 106, 395
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	85, 196, 457, 511
AjiI	CACGTC	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	3 cut(s)	591, 698, 704
AluI	AGCT	3 cut(s)	591, 698, 704
Alw26I	GTCTC	2 cut(s)	280, 349
AlwI	GGATC	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	3 cut(s)	21, 30, 636
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	4, 21, 31
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	4 cut(s)	22, 208, 250, 635
BciT130I	CCWGG	1 cut(s)	674
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	280, 349
BfaI	CTAG	2 cut(s)	588, 669
BfrI	CTTAAG	1 cut(s)	338
BglI	GCCNNNNNGGC	2 cut(s)	29, 731
BisI	GCNGC	1 cut(s)	723
BlsI	GCNGC	1 cut(s)	724
Bme1390I	CCNGG	2 cut(s)	107, 674
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	3 cut(s)	4, 21, 31
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	107, 674
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	415, 508, 637, 759
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	617, 684
BpuMI	CCSGG	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 106, 395
Bse1I	ACTGG	1 cut(s)	382
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	674
BseGI	GGATG	4 cut(s)	499, 549, 753, 781
BseLI	CCNNNNNNNGG	3 cut(s)	13, 106, 395
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	367, 505
BseXI	GCAGC	1 cut(s)	734
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	23, 32, 638
BsiSI	CCGG	2 cut(s)	107, 503
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	3 cut(s)	13, 106, 395
BsmAI	GTCTC	2 cut(s)	280, 349
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	23, 32, 638
Bso31I	GGTCTC	1 cut(s)	349
Bsp119I	TTCGAA	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	664
BspACI	CCGC	3 cut(s)	101, 464, 622
BspANI	GGCC	3 cut(s)	23, 32, 638
BspCNI	CTCAG	1 cut(s)	530
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	659
BspQI	GCTCTTC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	664
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	2 cut(s)	143, 440
BstAFI	CTTAAG	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	210, 626, 696
BstDEI	CTNAG	2 cut(s)	517, 727
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	4 cut(s)	499, 549, 753, 781
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	667
BstMAI	GTCTC	2 cut(s)	280, 349
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 100, 710, 719, 731
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	105, 672
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	734
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	23, 32, 638
BtgZI	GCGATG	1 cut(s)	227
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	4 cut(s)	499, 549, 753, 781
Cac8I	GCNNGC	3 cut(s)	210, 626, 696
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	4, 21, 31
CviAII	CATG	2 cut(s)	290, 390
DdeI	CTNAG	2 cut(s)	517, 727
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	143, 440
EarI	CTCTTC	2 cut(s)	143, 440
EciI	GGCGGA	1 cut(s)	611
Eco31I	GGTCTC	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	599
FaeI	CATG	2 cut(s)	293, 393
FaiI	YATR	8 cut(s)	174, 291, 391, 405, 417, 560, 771, 773
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	2 cut(s)	289, 389
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	771
Fnu4HI	GCNGC	1 cut(s)	723
FokI	GGATG	3 cut(s)	486, 556, 740
Fsp4HI	GCNGC	1 cut(s)	723
FspBI	CTAG	2 cut(s)	588, 669
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	723
HaeIII	GGCC	3 cut(s)	23, 32, 638
HapII	CCGG	2 cut(s)	107, 503
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	293, 393
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	4 cut(s)	367, 645, 658, 763
HpaII	CCGG	2 cut(s)	107, 503
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	3 cut(s)	126, 520, 529
Hpy188III	TCNNGA	7 cut(s)	142, 178, 503, 594, 614, 649, 662
Hpy8I	GTNNAC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	2 cut(s)	68, 678
HpyCH4V	TGCA	2 cut(s)	293, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 100, 710, 719, 731
HpyF3I	CTNAG	2 cut(s)	517, 727
HpySE526I	ACGT	2 cut(s)	68, 678
Hsp92II	CATG	2 cut(s)	293, 393
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	664
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	3 cut(s)	108, 322, 577
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	4 cut(s)	415, 508, 637, 759
MaeI	CTAG	2 cut(s)	588, 669
MaeII	ACGT	2 cut(s)	68, 678
MaeIII	GTNAC	3 cut(s)	245, 364, 548
MalI	GATC	1 cut(s)	666
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	1 cut(s)	664
MboII	GAAGA	4 cut(s)	130, 178, 232, 457
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	7 cut(s)	7, 34, 307, 345, 441, 526, 724
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	3 cut(s)	71, 339, 479
MslI	CAYNNNNRTG	3 cut(s)	254, 758, 774
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	2 cut(s)	107, 503
MspR9I	CCNGG	2 cut(s)	107, 674
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	5 cut(s)	29, 100, 710, 719, 731
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	2 cut(s)	293, 393
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	645, 658, 763
PflMI	CCANNNNNTGG	1 cut(s)	395
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	724
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	4, 21, 31
PsrI	GAACNNNNNNTAC	2 cut(s)	173, 205
RseI	CAYNNNNRTG	3 cut(s)	254, 758, 774
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	71, 339, 479
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	3 cut(s)	4, 21, 31
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	107, 674
SfaNI	GCATC	4 cut(s)	415, 508, 637, 759
SfiI	GGCCNNNNNGGCC	1 cut(s)	29
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	3 cut(s)	254, 758, 774
SmlI	CTYRAG	3 cut(s)	338, 632, 699
SmoI	CTYRAG	3 cut(s)	338, 632, 699
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	3 cut(s)	101, 464, 622
SspMI	CTAG	2 cut(s)	588, 669
StyD4I	CCNGG	2 cut(s)	105, 672
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	2 cut(s)	71, 681
TaqI	TCGA	5 cut(s)	12, 26, 51, 177, 663
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	645, 658, 763
Tru1I	TTAA	3 cut(s)	71, 339, 479
Tru9I	TTAA	3 cut(s)	71, 339, 479
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	278, 458, 755
Van91I	CCANNNNNTGG	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	2 cut(s)	588, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.