Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

11885571 .. 11889176

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAAGACAACAGTTGTTTATCTGGTGATTCTATGTCTCATTGTTTCATGTACCAATGGAGAAACCAAACATGTAAGAAAAATTAACTCCGATGGATCCGAAGCTTGGGGATACGTCGAAGTTAGACCAAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATATAGAGTTGAAAATCCTTCCAAGCCATGGCCTATCATCCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGGGTTGGTATAGGGAATTTTCAGGAGGTTGGACCATTAGACACATTTCTCAAGCCCAGAAACTCAACTTGGTTGAAGAAAGCCGATCTTTTGTTTGTGGATAGTCCAGTTGGGGCAGGGTACAGTTTCGTGGAGGGCAATCAAAAGGATTTGTATGTGAAAAGTGATGAAGAAGCAGCACAAGATTTGACCAAACTGTTGCAACAACTCTTCAACAAAAACCAGACTTTAAACCAAAGCCCTCTCTTCATTGTTGCTGAATCTTATGGTGGCAAAATCGCGGTTAAGCTCGGTTTATCGGTTATTGACGCAGTTCAATCTGGCAAATTGAAGCTTCATCTTGGAGGAGTGATTTTGGGAGATAGTTGGATATCCCCTGAAGATTTTGTGTTTTCATGGGGACCTCTTCTCAAGCATGTCTCTAGGCTTGATGACAATGGCTTGGATAGCTCTAATAGCTTAGCAGAGAAGATTAAAACACAAATTAAAAATGGTGAATACGTTGGAGCGACGCAAACATGGATGGACCTCGAAAACTTGATTAGTTCCAAATCCAATTTCGTCGATTTTTACAATTTTCTATTGGATACTGGTATGGACCCTGTCTCGCTCACAACGAGTCTAAAAATCAAAAAGGAAGAGAAAATAAAAAAGTATTCAAGATATTTAAATGATATGAGAAGTTTAAGTGACGTAGAAGATGTTGAAGGAGACCTTGATAAATTAATGAATGGCGTTATTAAGAAGAAGCTCAAGATTATTCCCAACGACCTCATATGGGGAAACAATTCGGATGATGTGTTTACAGCAATGGAGGCTGCTTTTATGAAACCCGTAATTGAAGACGTCGATGAGCTTCTTGCCACGGGGGTAGATGTGACCATCTATAATGGACAACTTGATGTTATCTGTTCAACAAGTGGAACTGAAGCATGGGTTCACAAACTCAGGTGGGAGGGGCTAGAAGAATTCAAGAAAATGGAAAGAGAGCCATTATTCTGCGAAAGTGACAGAGCAACAAGAGGCTTTACCAAATCATACAAAAATCTCCATTTTTATTGGATTCTTGGTGCTGGTCATTTTGTACCAGTAGATGAGCCATGTGTAGCATTAAAAATGGTTGGAGAGATAACCAAGTCACCACAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

461

Amino Acids

51.75

Weight (kDa)

5.64

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	31 - 455	2.9e-78	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AatII	GACGTC	1 cut(s)	1083
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	515
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	2 cut(s)	90, 103
AcsI	RAATTY	2 cut(s)	250, 1202
AcuI	CTGAAG	3 cut(s)	216, 633, 1182
AcyI	GRCGYC	1 cut(s)	1080
AfaI	GTAC	3 cut(s)	52, 356, 1320
AfiI	CCNNNNNNNGG	3 cut(s)	105, 192, 1012
AflIII	ACRYGT	2 cut(s)	70, 138
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	4 cut(s)	286, 318, 776, 808
AluBI	AGCT	8 cut(s)	104, 230, 523, 568, 684, 693, 985, 1090
AluI	AGCT	8 cut(s)	104, 230, 523, 568, 684, 693, 985, 1090
Alw26I	GTCTC	4 cut(s)	41, 658, 844, 939
AlwI	GGATC	2 cut(s)	90, 103
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	410, 1052
ApoI	RAATTY	2 cut(s)	250, 1202
AseI	ATTAAT	1 cut(s)	959
Asp700I	GAANNNNTTC	1 cut(s)	1021
AspS9I	GGNCC	5 cut(s)	221, 266, 635, 760, 832
AsuHPI	GGTGA	3 cut(s)	37, 740, 1365
AvaII	GGWCC	5 cut(s)	221, 266, 635, 760, 832
BamHI	GGATCC	1 cut(s)	95
BbsI	GAAGAC	2 cut(s)	11, 1083
BbvI	GCAGC	2 cut(s)	422, 1039
BccI	CCATC	3 cut(s)	86, 751, 1124
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	2 cut(s)	104, 814
BcoDI	GTCTC	4 cut(s)	41, 658, 844, 939
BfaI	CTAG	2 cut(s)	657, 1196
BfuI	GTATCC	2 cut(s)	104, 814
BisI	GCNGC	2 cut(s)	411, 1053
BlpI	GCTNAGC	1 cut(s)	694
BlsI	GCNGC	2 cut(s)	412, 1054
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	5 cut(s)	221, 266, 635, 760, 832
BmgT120I	GGNCC	5 cut(s)	221, 266, 635, 760, 832
BmiI	GGNNCC	4 cut(s)	97, 212, 636, 834
BmrFI	CCNGG	1 cut(s)	225
BpiI	GAAGAC	2 cut(s)	11, 1083
BpmI	CTGGAG	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	694
BpuEI	CTTGAG	3 cut(s)	269, 629, 971
BsaHI	GRCGYC	1 cut(s)	1080
BsaI	GGTCTC	1 cut(s)	939
BsaJI	CCNNGG	3 cut(s)	191, 214, 1098
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 192, 1012
Bse1I	ACTGG	3 cut(s)	341, 829, 1322
Bse3DI	GCAATG	1 cut(s)	1050
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	191, 214, 1098
BseGI	GGATG	3 cut(s)	201, 762, 1033
BseLI	CCNNNNNNNGG	3 cut(s)	105, 192, 1012
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	1 cut(s)	1195
BseNI	ACTGG	3 cut(s)	341, 829, 1322
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	422, 1039
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	3 cut(s)	105, 192, 1012
BsmAI	GTCTC	4 cut(s)	41, 658, 844, 939
BsmFI	GGGAC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	939
Bsp143I	GATC	2 cut(s)	95, 319
Bsp1720I	GCTNAGC	1 cut(s)	694
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	1194
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	4 cut(s)	97, 212, 636, 834
BspPI	GGATC	2 cut(s)	90, 103
BspTNI	GGTCTC	1 cut(s)	939
BsrDI	GCAATG	1 cut(s)	1050
BsrI	ACTGG	3 cut(s)	341, 829, 1322
BssECI	CCNNGG	3 cut(s)	191, 214, 1098
BssMI	GATC	2 cut(s)	95, 319
BssNI	GRCGYC	1 cut(s)	1080
BssT1I	CCWWGG	2 cut(s)	191, 214
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	13, 359, 432
Bst6I	CTCTTC	4 cut(s)	449, 485, 645, 867
BstACI	GRCGYC	1 cut(s)	1080
BstDEI	CTNAG	2 cut(s)	694, 1181
BstDSI	CCRYGG	2 cut(s)	191, 1098
BstF5I	GGATG	3 cut(s)	201, 762, 1033
BstFNI	CGCG	1 cut(s)	515
BstKTI	GATC	2 cut(s)	98, 322
BstMAI	GTCTC	4 cut(s)	41, 658, 844, 939
BstMBI	GATC	2 cut(s)	95, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	681, 690, 1049
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	3 cut(s)	74, 142, 653
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	422, 1039
BstV2I	GAAGAC	2 cut(s)	11, 1083
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuI	GTATCC	2 cut(s)	104, 814
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	2 cut(s)	191, 1098
BtsCI	GGATG	3 cut(s)	201, 762, 1033
Cfr13I	GGNCC	5 cut(s)	221, 266, 635, 760, 832
CseI	GACGC	2 cut(s)	551, 754
Csp6I	GTAC	3 cut(s)	51, 355, 1319
CviAII	CATG	9 cut(s)	48, 71, 139, 192, 630, 650, 753, 1167, 1335
CviQI	GTAC	3 cut(s)	51, 355, 1319
DdeI	CTNAG	2 cut(s)	694, 1181
DpnI	GATC	2 cut(s)	97, 321
DpnII	GATC	2 cut(s)	95, 319
DraI	TTTAAA	2 cut(s)	465, 903
Eam1104I	CTCTTC	4 cut(s)	449, 485, 645, 867
EarI	CTCTTC	4 cut(s)	449, 485, 645, 867
Eco130I	CCWWGG	2 cut(s)	191, 214
Eco31I	GGTCTC	1 cut(s)	939
Eco32I	GATATC	1 cut(s)	606
Eco47I	GGWCC	5 cut(s)	221, 266, 635, 760, 832
Eco57I	CTGAAG	3 cut(s)	216, 633, 1182
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	1202
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	606
EcoT14I	CCWWGG	2 cut(s)	191, 214
ErhI	CCWWGG	2 cut(s)	191, 214
FaeI	CATG	9 cut(s)	51, 74, 142, 195, 633, 653, 756, 1170, 1338
FalI	AAGNNNNNCTT	4 cut(s)	306, 338, 933, 965
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	9 cut(s)	47, 70, 138, 191, 629, 649, 752, 1166, 1334
FauNDI	CATATG	1 cut(s)	1010
Fnu4HI	GCNGC	2 cut(s)	411, 1053
FokI	GGATG	3 cut(s)	188, 769, 1040
Fsp4HI	GCNGC	2 cut(s)	411, 1053
FspBI	CTAG	2 cut(s)	657, 1196
GluI	GCNGC	2 cut(s)	411, 1053
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	196
HgaI	GACGC	2 cut(s)	551, 754
Hin1I	GRCGYC	1 cut(s)	1080
Hin1II	CATG	9 cut(s)	51, 74, 142, 195, 633, 653, 756, 1170, 1338
HindIII	AAGCTT	2 cut(s)	102, 566
HinfI	GANTC	4 cut(s)	28, 494, 853, 1297
HphI	GGTGA	3 cut(s)	37, 740, 1365
Hpy166II	GTNNAC	3 cut(s)	221, 1038, 1174
Hpy188I	TCNGA	3 cut(s)	91, 100, 1027
Hpy188III	TCNNGA	4 cut(s)	257, 894, 988, 1207
Hpy8I	GTNNAC	3 cut(s)	221, 1038, 1174
Hpy99I	CGWCG	4 cut(s)	119, 748, 800, 1085
HpyAV	CCTTC	2 cut(s)	192, 935
HpyCH4III	ACNGT	3 cut(s)	13, 359, 432
HpyCH4IV	ACGT	4 cut(s)	114, 735, 927, 1080
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	681, 690, 1049
HpyF3I	CTNAG	2 cut(s)	694, 1181
HpySE526I	ACGT	4 cut(s)	114, 735, 927, 1080
Hsp92I	GRCGYC	1 cut(s)	1080
Hsp92II	CATG	9 cut(s)	51, 74, 142, 195, 633, 653, 756, 1170, 1338
Kzo9I	GATC	2 cut(s)	95, 319
LmnI	GCTCC	3 cut(s)	216, 227, 740
Lsp1109I	GCAGC	2 cut(s)	422, 1039
MaeI	CTAG	2 cut(s)	657, 1196
MaeII	ACGT	4 cut(s)	114, 735, 927, 1080
MaeIII	GTNAC	4 cut(s)	923, 1111, 1241, 1371
MalI	GATC	2 cut(s)	97, 321
MboI	GATC	2 cut(s)	95, 319
MflI	RGATCY	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	4 cut(s)	244, 581, 718, 1336
MroXI	GAANNNNTTC	1 cut(s)	1021
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	681, 690, 1049
NcoI	CCATGG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	1010
NdeII	GATC	2 cut(s)	95, 319
NlaIII	CATG	9 cut(s)	51, 74, 142, 195, 633, 653, 756, 1170, 1338
NlaIV	GGNNCC	4 cut(s)	97, 212, 636, 834
NmuCI	GTSAC	4 cut(s)	923, 1111, 1241, 1371
NspI	RCATGY	3 cut(s)	74, 142, 653
PciI	ACATGT	2 cut(s)	70, 138
PcsI	WCGNNNNNNNCGW	1 cut(s)	848
PdmI	GAANNNNTTC	1 cut(s)	1021
PfeI	GAWTC	3 cut(s)	28, 494, 1297
PflFI	GACNNNGTC	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	412, 1054
PleI	GAGTC	1 cut(s)	861
PpsI	GAGTC	1 cut(s)	861
PpuMI	RGGWCCY	1 cut(s)	635
PscI	ACATGT	2 cut(s)	70, 138
PshBI	ATTAAT	1 cut(s)	959
PsiI	TTATAA	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	4 cut(s)	97, 212, 636, 834
PspPI	GGNCC	5 cut(s)	221, 266, 635, 760, 832
PspPPI	RGGWCCY	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	95
PsyI	GACNNNGTC	1 cut(s)	836
RsaI	GTAC	3 cut(s)	52, 356, 1320
RsaNI	GTAC	3 cut(s)	51, 355, 1319
SatI	GCNGC	2 cut(s)	411, 1053
Sau3AI	GATC	2 cut(s)	95, 319
Sau96I	GGNCC	5 cut(s)	221, 266, 635, 760, 832
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	1 cut(s)	225
SinI	GGWCC	5 cut(s)	221, 266, 635, 760, 832
SmiI	ATTTAAAT	1 cut(s)	903
SmlI	CTYRAG	3 cut(s)	284, 644, 986
SmoI	CTYRAG	3 cut(s)	284, 644, 986
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	2 cut(s)	657, 1196
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	2 cut(s)	191, 214
SwaI	ATTTAAAT	1 cut(s)	903
TaaI	ACNGT	3 cut(s)	13, 359, 432
TaiI	ACGT	4 cut(s)	117, 738, 930, 1083
TaqI	TCGA	4 cut(s)	117, 765, 798, 1083
TfiI	GAWTC	3 cut(s)	28, 494, 1297
TseFI	GTSAC	4 cut(s)	923, 1111, 1241, 1371
TseI	GCWGC	2 cut(s)	410, 1052
Tsp45I	GTSAC	4 cut(s)	923, 1111, 1241, 1371
TspDTI	ATGAA	8 cut(s)	17, 36, 417, 472, 560, 618, 977, 1076
Tth111I	GACNNNGTC	1 cut(s)	836
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	5 cut(s)	221, 266, 635, 760, 832
VspI	ATTAAT	1 cut(s)	959
XapI	RAATTY	2 cut(s)	250, 1202
XceI	RCATGY	3 cut(s)	74, 142, 653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	1021
XspI	CTAG	2 cut(s)	657, 1196
ZraI	GACGTC	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.