Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

4271727 .. 4272547

Gene Structure 821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG023900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAAAGGTCCCTATACTTGTTCTTGTTCTCCTTTTGGTGCCAACAGCAACTGCTGCTAGAACCCAAGATGGATCAGAGGACTGGGGCTATGTTGAAGTCCGACTCAAAGAACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGGTTCGGGAGTTGGGATTGGGAACTTTGAAGAGGTTGGGCCATTAGACACCAATGTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACATTACTAAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCTTCTGTTCATTGTCGCAGGGCCGGCAAACTCGCAAGGCCGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

4.89

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	24 - 154	4.2e-33	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	82, 152, 165
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	98, 236, 279, 421
AjnI	CCWGG	1 cut(s)	202
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
AlwI	GGATC	3 cut(s)	82, 152, 165
AlwNI	CAGNNNCTG	2 cut(s)	53, 389
AoxI	GGCC	5 cut(s)	173, 245, 467, 484, 488
ApeKI	GCWGC	2 cut(s)	56, 383
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	5 cut(s)	10, 200, 245, 467, 489
AvaII	GGWCC	2 cut(s)	10, 200
BalI	TGGCCA	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	43, 395
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	204
BfaI	CTAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	2 cut(s)	57, 384
BlsI	GCNGC	2 cut(s)	58, 385
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	2 cut(s)	10, 200
BmgT120I	GGNCC	5 cut(s)	10, 200, 245, 467, 489
BmiI	GGNNCC	5 cut(s)	12, 42, 159, 191, 328
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	2 cut(s)	94, 314
BmuI	ACTGGG	2 cut(s)	94, 314
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	2 cut(s)	225, 422
BsaJI	CCNNGG	3 cut(s)	170, 193, 269
BsaWI	WCCGGW	1 cut(s)	329
Bse118I	RCCGGY	2 cut(s)	469, 486
Bse1I	ACTGG	2 cut(s)	89, 320
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	170, 193, 269
BseNI	ACTGG	2 cut(s)	89, 320
BseXI	GCAGC	2 cut(s)	43, 395
BshFI	GGCC	5 cut(s)	175, 247, 469, 486, 490
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	330, 470, 487
BsnI	GGCC	5 cut(s)	175, 247, 469, 486, 490
Bsp143I	GATC	3 cut(s)	74, 157, 298
Bsp19I	CCATGG	1 cut(s)	170
BspANI	GGCC	5 cut(s)	175, 247, 469, 486, 490
BspLI	GGNNCC	5 cut(s)	12, 42, 159, 191, 328
BspPI	GGATC	3 cut(s)	82, 152, 165
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	2 cut(s)	469, 486
BsrI	ACTGG	2 cut(s)	89, 320
BssAI	RCCGGY	2 cut(s)	469, 486
BssECI	CCNNGG	3 cut(s)	170, 193, 269
BssMI	GATC	3 cut(s)	74, 157, 298
BssT1I	CCWWGG	3 cut(s)	170, 193, 269
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	231, 437
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	471, 488
BstDSI	CCRYGG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	77, 160, 301
BstMBI	GATC	3 cut(s)	74, 157, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 470, 487
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	43, 395
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	157, 298
BstYI	RGATCY	2 cut(s)	157, 298
BsuRI	GGCC	5 cut(s)	175, 247, 469, 486, 490
BtgI	CCRYGG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	471, 488
CaiI	CAGNNNCTG	2 cut(s)	53, 389
Cfr10I	RCCGGY	2 cut(s)	469, 486
Cfr13I	GGNCC	5 cut(s)	10, 200, 245, 467, 489
CviAII	CATG	2 cut(s)	118, 171
DpnI	GATC	3 cut(s)	76, 159, 300
DpnII	GATC	3 cut(s)	74, 157, 298
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	231, 437
EarI	CTCTTC	2 cut(s)	231, 437
Eco130I	CCWWGG	3 cut(s)	170, 193, 269
Eco47I	GGWCC	2 cut(s)	10, 200
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	3 cut(s)	170, 193, 269
ErhI	CCWWGG	3 cut(s)	170, 193, 269
FaeI	CATG	2 cut(s)	121, 174
FaiI	YATR	5 cut(s)	17, 93, 119, 135, 172
FatI	CATG	2 cut(s)	117, 170
Fnu4HI	GCNGC	2 cut(s)	57, 384
FseI	GGCCGGCC	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	57, 384
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	57, 384
GsuI	CTGGAG	2 cut(s)	225, 422
HaeIII	GGCC	5 cut(s)	175, 247, 469, 486, 490
HapII	CCGG	3 cut(s)	330, 470, 487
Hin1II	CATG	2 cut(s)	121, 174
HinfI	GANTC	3 cut(s)	105, 333, 445
HpaII	CCGG	3 cut(s)	330, 470, 487
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	79, 104
Hpy188III	TCNNGA	2 cut(s)	213, 439
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 470, 487
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	121, 174
KroI	GCCGGC	2 cut(s)	469, 486
KroNI	GCCGGC	2 cut(s)	471, 488
Kzo9I	GATC	3 cut(s)	74, 157, 298
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	43, 395
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	281
MalI	GATC	3 cut(s)	76, 159, 300
MboI	GATC	3 cut(s)	74, 157, 298
MboII	GAAGA	3 cut(s)	248, 440, 454
MflI	RGATCY	2 cut(s)	157, 298
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	2 cut(s)	177, 274
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	99, 454
MmeI	TCCRAC	2 cut(s)	127, 304
MnlI	CCTC	8 cut(s)	73, 148, 172, 200, 232, 340, 373, 446
Mox20I	TGGCCA	1 cut(s)	175
MroNI	GCCGGC	2 cut(s)	469, 486
MscI	TGGCCA	1 cut(s)	175
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	3 cut(s)	330, 470, 487
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	56, 470, 487
NaeI	GCCGGC	2 cut(s)	471, 488
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	3 cut(s)	74, 157, 298
NgoMIV	GCCGGC	2 cut(s)	469, 486
NlaIII	CATG	2 cut(s)	121, 174
NlaIV	GGNNCC	5 cut(s)	12, 42, 159, 191, 328
NspI	RCATGY	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	260
PciI	ACATGT	1 cut(s)	117
PdiI	GCCGGC	2 cut(s)	471, 488
PfeI	GAWTC	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	58, 385
PleI	GAGTC	2 cut(s)	99, 453
PpsI	GAGTC	2 cut(s)	99, 453
PpuMI	RGGWCCY	1 cut(s)	10
PscI	ACATGT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	5 cut(s)	12, 42, 159, 191, 328
PspPI	GGNCC	5 cut(s)	10, 200, 245, 467, 489
PspPPI	RGGWCCY	1 cut(s)	10
PstNI	CAGNNNCTG	2 cut(s)	53, 389
PsuI	RGATCY	2 cut(s)	157, 298
RigI	GGCCGGCC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	260
SatI	GCNGC	2 cut(s)	57, 384
Sau3AI	GATC	3 cut(s)	74, 157, 298
Sau96I	GGNCC	5 cut(s)	10, 200, 245, 467, 489
SchI	GAGTC	2 cut(s)	99, 454
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	7 cut(s)	12, 199, 205, 211, 243, 284, 417
SinI	GGWCC	2 cut(s)	10, 200
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	177, 274
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	3 cut(s)	170, 193, 269
TaiI	ACGT	1 cut(s)	284
TasI	AATT	2 cut(s)	177, 274
TfiI	GAWTC	1 cut(s)	333
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	2 cut(s)	56, 383
TspDTI	ATGAA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	10, 200
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	183, 200
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.