Rw0G012600

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00564
Physical Location & Seq
Forward (+)
106 .. 4930
4825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012600.1

Sequence Viewer

Length: 1278 bp
CACATGTTCTGGTGGCTTTATAGAAGTCCTGACAGAGTTGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGGTTCAGGAGTTGGGATTGGGAACTTTGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACATTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGGTGTTGCATTGGGAGACAGTTGGATCTCCCCGGAAGATTTTGTGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGATGATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGAGGGGAAATTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGACGTGGATTTCTATAATTTCCTATTGGATTCAGGAATGGACCCACTGTCAGTATCTGTGACAACCACTGAAATATCACCAAAAAAATTTACATTTACGAGATATACAAGATATCTAAATTCCTTGAGGCAGTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACATTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGGCAAGTTGATCTTATATGCGCAACTAAGGGGACAGAAGCATGGATTGAAAAGCTCAAGTGGGATGGACTCCAACAATTTCTGAACAAGAGTAGAACCCCTCTCTACTGTGGAAGTGATAGAAGTACAAGAGGATTCACTAGGTCGTACAAAAACCTTCACTTCTATTGGATTCTCGGAGCAGGACACTTTGTACCTGTGGATCAGCCCTGCATTGCTTTGAATATGGTGGCTGATATTACACAGTCACCTGCTGCTGCTTCTGCTCCACATAGAAGCACAAGATGA

Protein Analysis

425

Amino Acids

47.1

Weight (kDa)

5.43

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 1 - 410 7.6e-77 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1249
Acc16I TGCGCA 1 cut(s) 1012
Acc36I ACCTGC 1 cut(s) 1249
AclWI GGATC 4 cut(s) 38, 51, 470, 1200
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 4 cut(s) 160, 368, 737, 769
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 3 cut(s) 1117, 1139, 1185
AflII CTTAAG 1 cut(s) 851
AflIII ACRYGT 1 cut(s) 3
AgsI TTSAA 9 cut(s) 122, 151, 165, 307, 410, 516, 829, 1040, 1213
AhdI GACNNNNNGTC 1 cut(s) 697
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 2 cut(s) 88, 796
AluBI AGCT 7 cut(s) 301, 395, 427, 562, 850, 908, 1045
AluI AGCT 7 cut(s) 301, 395, 427, 562, 850, 908, 1045
Alw26I GTCTC 3 cut(s) 447, 912, 922
AlwI GGATC 4 cut(s) 38, 51, 470, 1200
AlwNI CAGNNNCTG 2 cut(s) 275, 707
AoxI GGCC 2 cut(s) 59, 131
ApeKI GCWGC 5 cut(s) 269, 374, 571, 1244, 1247
ApoI RAATTY 4 cut(s) 160, 368, 737, 769
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AspLEI GCGC 2 cut(s) 641, 1013
AspS9I GGNCC 4 cut(s) 86, 131, 494, 691
AsuC2I CCSGG 2 cut(s) 470, 643
AsuHPI GGTGA 3 cut(s) 611, 720, 1230
AsuII TTCGAA 1 cut(s) 903
AvaII GGWCC 3 cut(s) 86, 494, 691
BalI TGGCCA 1 cut(s) 61
BamHI GGATCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 5 cut(s) 281, 386, 583, 1231, 1234
BccI CCATC 2 cut(s) 524, 1049
BciT130I CCWGG 2 cut(s) 90, 798
BclI TGATCA 2 cut(s) 564, 949
BcnI CCSGG 2 cut(s) 470, 643
BcoDI GTCTC 3 cut(s) 447, 912, 922
BfaI CTAG 1 cut(s) 1131
BfoI RGCGCY 1 cut(s) 642
BfrI CTTAAG 1 cut(s) 851
BfuAI ACCTGC 1 cut(s) 1249
BglII AGATCT 2 cut(s) 184, 811
BisI GCNGC 5 cut(s) 270, 375, 572, 1245, 1248
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 5 cut(s) 271, 376, 573, 1246, 1249
Bme1390I CCNGG 4 cut(s) 90, 470, 643, 798
Bme18I GGWCC 3 cut(s) 86, 494, 691
BmeRI GACNNNNNGTC 1 cut(s) 697
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 4 cut(s) 86, 131, 494, 691
BmiI GGNNCC 5 cut(s) 45, 77, 214, 495, 693
BmrFI CCNGG 4 cut(s) 90, 470, 643, 798
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 2 cut(s) 111, 308
Bpu1102I GCTNAGC 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 903
BpuEI CTTGAG 3 cut(s) 644, 796, 1031
BpuMI CCSGG 2 cut(s) 470, 643
BsaI GGTCTC 1 cut(s) 922
BsaJI CCNNGG 4 cut(s) 56, 79, 155, 468
BsaWI WCCGGW 2 cut(s) 215, 914
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 1203
BseBI CCWGG 2 cut(s) 90, 798
BseDI CCNNGG 4 cut(s) 56, 79, 155, 468
BseGI GGATG 1 cut(s) 1060
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 5 cut(s) 281, 386, 583, 1231, 1234
BshFI GGCC 2 cut(s) 61, 133
BsiSI CCGG 4 cut(s) 216, 470, 642, 915
BslFI GGGAC 1 cut(s) 1036
BsmAI GTCTC 3 cut(s) 447, 912, 922
BsmFI GGGAC 1 cut(s) 1036
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 2 cut(s) 61, 133
Bso31I GGTCTC 1 cut(s) 922
Bsp119I TTCGAA 1 cut(s) 903
Bsp143I GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 1 cut(s) 56
BspANI GGCC 2 cut(s) 61, 133
BspCNI CTCAG 1 cut(s) 571
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 5 cut(s) 45, 77, 214, 495, 693
BspMI ACCTGC 1 cut(s) 1249
BspPI GGATC 4 cut(s) 38, 51, 470, 1200
BspT104I TTCGAA 1 cut(s) 903
BspTI CTTAAG 1 cut(s) 851
BspTNI GGTCTC 1 cut(s) 922
BsrDI GCAATG 1 cut(s) 1203
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 56, 79, 155, 468
BssMI GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
BssT1I CCWWGG 3 cut(s) 56, 79, 155
Bst2UI CCWGG 2 cut(s) 90, 798
Bst4CI ACNGT 5 cut(s) 458, 551, 699, 1100, 1236
Bst6I CTCTTC 3 cut(s) 117, 323, 504
BstAFI CTTAAG 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 903
BstDEI CTNAG 3 cut(s) 428, 558, 1017
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 1060
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 2 cut(s) 641, 1013
BstKTI GATC 8 cut(s) 46, 187, 465, 567, 814, 952, 1003, 1195
BstMAI GTCTC 3 cut(s) 447, 912, 922
BstMBI GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
BstMWI GCNNNNNNNGC 3 cut(s) 401, 568, 1253
BstNI CCWGG 2 cut(s) 90, 798
BstNSI RCATGY 1 cut(s) 7
BstSCI CCNGG 4 cut(s) 88, 468, 641, 796
BstV1I GCAGC 5 cut(s) 281, 386, 583, 1231, 1234
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 4 cut(s) 43, 184, 462, 811
BstYI RGATCY 4 cut(s) 43, 184, 462, 811
BsuRI GGCC 2 cut(s) 61, 133
BtgI CCRYGG 1 cut(s) 56
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 1 cut(s) 1060
BtsIMutI CAGTG 4 cut(s) 273, 556, 695, 717
BveI ACCTGC 1 cut(s) 1249
CaiI CAGNNNCTG 2 cut(s) 275, 707
CciI TCATGA 1 cut(s) 924
CfoI GCGC 2 cut(s) 641, 1013
Cfr13I GGNCC 4 cut(s) 86, 131, 494, 691
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 3 cut(s) 1116, 1138, 1184
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviAII CATG 6 cut(s) 4, 57, 489, 612, 925, 1032
CviQI GTAC 3 cut(s) 1116, 1138, 1184
DdeI CTNAG 3 cut(s) 428, 558, 1017
DpnI GATC 8 cut(s) 45, 186, 464, 566, 813, 951, 1002, 1194
DpnII GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
DraIII CACNNNGTG 1 cut(s) 800
DriI GACNNNNNGTC 1 cut(s) 697
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 3 cut(s) 117, 323, 504
Eam1105I GACNNNNNGTC 1 cut(s) 697
EarI CTCTTC 3 cut(s) 117, 323, 504
Eco130I CCWWGG 3 cut(s) 56, 79, 155
Eco31I GGTCTC 1 cut(s) 922
Eco32I GATATC 1 cut(s) 764
Eco47I GGWCC 3 cut(s) 86, 494, 691
EcoO109I RGGNCCY 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 88, 796
EcoRV GATATC 1 cut(s) 764
EcoT14I CCWWGG 3 cut(s) 56, 79, 155
ErhI CCWWGG 3 cut(s) 56, 79, 155
FaeI CATG 6 cut(s) 7, 60, 492, 615, 928, 1035
FalI AAGNNNNNCTT 2 cut(s) 987, 1019
FaqI GGGAC 1 cut(s) 1036
FatI CATG 6 cut(s) 3, 56, 488, 611, 924, 1031
FbaI TGATCA 2 cut(s) 564, 949
Fnu4HI GCNGC 5 cut(s) 270, 375, 572, 1245, 1248
FokI GGATG 1 cut(s) 1067
Fsp4HI GCNGC 5 cut(s) 270, 375, 572, 1245, 1248
FspBI CTAG 1 cut(s) 1131
FspI TGCGCA 1 cut(s) 1012
GlaI GCGC 2 cut(s) 640, 1012
GluI GCNGC 5 cut(s) 270, 375, 572, 1245, 1248
GsuI CTGGAG 2 cut(s) 111, 308
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 2 cut(s) 61, 133
HapII CCGG 4 cut(s) 216, 470, 642, 915
HhaI GCGC 2 cut(s) 641, 1013
Hin1II CATG 6 cut(s) 7, 60, 492, 615, 928, 1035
Hin6I GCGC 2 cut(s) 639, 1011
HinP1I GCGC 2 cut(s) 639, 1011
HindIII AAGCTT 2 cut(s) 425, 848
HinfI GANTC 9 cut(s) 219, 331, 353, 379, 616, 680, 1059, 1125, 1162
HpaII CCGG 4 cut(s) 216, 470, 642, 915
HphI GGTGA 3 cut(s) 611, 720, 1230
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 892, 1074, 1169
Hpy188III TCNNGA 6 cut(s) 29, 99, 325, 684, 815, 925
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 2 cut(s) 407, 1157
HpyCH4III ACNGT 5 cut(s) 458, 551, 699, 1100, 1236
HpyCH4IV ACGT 3 cut(s) 167, 510, 654
HpyCH4V TGCA 6 cut(s) 175, 374, 446, 602, 886, 1203
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 568, 1253
HpyF3I CTNAG 3 cut(s) 428, 558, 1017
HpySE526I ACGT 3 cut(s) 167, 510, 654
Hsp92II CATG 6 cut(s) 7, 60, 492, 615, 928, 1035
HspAI GCGC 2 cut(s) 639, 1011
Ksp22I TGATCA 2 cut(s) 564, 949
Kzo9I GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
LmnI GCTCC 3 cut(s) 81, 1169, 1261
Lsp1109I GCAGC 5 cut(s) 281, 386, 583, 1231, 1234
LweI GCATC 1 cut(s) 589
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 3 cut(s) 167, 510, 654
MaeIII GTNAC 6 cut(s) 617, 647, 709, 871, 976, 1236
MalI GATC 8 cut(s) 45, 186, 464, 566, 813, 951, 1002, 1194
MboI GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
MboII GAAGA 7 cut(s) 134, 340, 422, 485, 491, 608, 777
MflI RGATCY 4 cut(s) 43, 184, 462, 811
MlsI TGGCCA 1 cut(s) 61
MluNI TGGCCA 1 cut(s) 61
MlyI GAGTC 5 cut(s) 340, 362, 373, 625, 1053
MmeI TCCRAC 4 cut(s) 190, 440, 915, 1087
Mox20I TGGCCA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 61
MseI TTAA 3 cut(s) 579, 840, 852
Msp20I TGGCCA 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 562
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 4 cut(s) 216, 470, 642, 915
MspR9I CCNGG 4 cut(s) 90, 470, 643, 798
Mva1269I GAATGC 1 cut(s) 888
MvaI CCWGG 2 cut(s) 90, 798
MwoI GCNNNNNNNGC 3 cut(s) 401, 568, 1253
NciI CCSGG 2 cut(s) 470, 643
NcoI CCATGG 1 cut(s) 56
NdeII GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
NlaIII CATG 6 cut(s) 7, 60, 492, 615, 928, 1035
NlaIV GGNNCC 5 cut(s) 45, 77, 214, 495, 693
NmuCI GTSAC 5 cut(s) 617, 709, 871, 976, 1236
NsbI TGCGCA 1 cut(s) 1012
NspI RCATGY 1 cut(s) 7
NspV TTCGAA 1 cut(s) 903
PagI TCATGA 1 cut(s) 924
PaqCI CACCTGC 1 cut(s) 1249
PciI ACATGT 1 cut(s) 3
PctI GAATGC 1 cut(s) 888
PfeI GAWTC 4 cut(s) 219, 680, 1125, 1162
PkrI GCNGC 5 cut(s) 271, 376, 573, 1246, 1249
PleI GAGTC 5 cut(s) 339, 361, 373, 624, 1053
PpsI GAGTC 5 cut(s) 339, 361, 373, 624, 1053
PpuMI RGGWCCY 1 cut(s) 494
PscI ACATGT 1 cut(s) 3
Psp5II RGGWCCY 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 88, 796
PspGI CCWGG 2 cut(s) 88, 796
PspN4I GGNNCC 5 cut(s) 45, 77, 214, 495, 693
PspPI GGNCC 4 cut(s) 86, 131, 494, 691
PspPPI RGGWCCY 1 cut(s) 494
PstNI CAGNNNCTG 2 cut(s) 275, 707
PsuI RGATCY 4 cut(s) 43, 184, 462, 811
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 3 cut(s) 1117, 1139, 1185
RsaNI GTAC 3 cut(s) 1116, 1138, 1184
SaqAI TTAA 3 cut(s) 579, 840, 852
SatI GCNGC 5 cut(s) 270, 375, 572, 1245, 1248
Sau3AI GATC 8 cut(s) 43, 184, 462, 564, 811, 949, 1000, 1192
Sau96I GGNCC 4 cut(s) 86, 131, 494, 691
SchI GAGTC 5 cut(s) 340, 362, 373, 625, 1053
ScrFI CCNGG 4 cut(s) 90, 470, 643, 798
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 1 cut(s) 589
SfuI TTCGAA 1 cut(s) 903
SinI GGWCC 3 cut(s) 86, 494, 691
SmlI CTYRAG 4 cut(s) 623, 775, 851, 1046
SmoI CTYRAG 4 cut(s) 623, 775, 851, 1046
SspMI CTAG 1 cut(s) 1131
StyD4I CCNGG 4 cut(s) 88, 468, 641, 796
StyI CCWWGG 3 cut(s) 56, 79, 155
TaaI ACNGT 5 cut(s) 458, 551, 699, 1100, 1236
TaiI ACGT 3 cut(s) 170, 513, 657
TaqI TCGA 1 cut(s) 903
TatI WGTACW 1 cut(s) 1115
TfiI GAWTC 4 cut(s) 219, 680, 1125, 1162
Tru1I TTAA 3 cut(s) 579, 840, 852
Tru9I TTAA 3 cut(s) 579, 840, 852
TscAI CASTG 4 cut(s) 280, 556, 702, 724
TseFI GTSAC 5 cut(s) 617, 709, 871, 976, 1236
TseI GCWGC 5 cut(s) 269, 374, 571, 1244, 1247
Tsp45I GTSAC 5 cut(s) 617, 709, 871, 976, 1236
TspDTI ATGAA 5 cut(s) 331, 477, 600, 777, 913
TspRI CASTG 4 cut(s) 280, 556, 702, 724
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 3 cut(s) 86, 494, 691
XapI RAATTY 4 cut(s) 160, 368, 737, 769
XceI RCATGY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 2 cut(s) 69, 86
XspI CTAG 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.