Rroxscaffold_1G00023950

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
29631709 .. 29637495
5787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023950.1

Sequence Viewer

Length: 1269 bp
ATGGAAAAGGTCCCTATACTTGTTCTTGTTTCTGTTCTCCTTTTGGTGCCAACAGCAACTGCTGCGAGAACCCAAGATGGATCAGAGGACTGGGGCTATGTTGAAGTCCGACCCAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTGGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGGTTCAGGAGTTGGGATTGGGAACTTTGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGGACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCATTGATTTGACAACATTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGGTGTTGCATTGGGAGACAGTTGGATCTCCCCGGAAGATTTTGTGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGACAATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAACTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGAAGTGTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACTTTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACTGGAGACTTCATGAGACCCAGAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGGCAAGTTGATCTTATATGCGCAACTAAGGGAACAGAAGCATGGATTGAAAAGCTCAAGTGGGATGGACTCCAACAATTTCTGAACAAGAGTAGAACCCCTCTCTACTGTGGAAGTGATAGAAGTACAAGAGGATTCACCAGGTCGTACAAAAACCTTCACTTCTATTGGTTTCTTGGAGCAGGACACTTTGTACCTGTGGATCAGCCCTGCATTGCTTTGAATATGGTGGTTGATATTACACAGTCACCTGCTGCTGCTTCTGCTCCACATAGAAGCACTTGA

Protein Analysis

422

Amino Acids

46.42

Weight (kDa)

5.33

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 26 - 407 1.3e-73 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1243
Acc16I TGCGCA 1 cut(s) 1006
Acc36I ACCTGC 1 cut(s) 1243
AccB1I GGYRCC 1 cut(s) 46
AclWI GGATC 5 cut(s) 88, 158, 171, 590, 1194
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 2 cut(s) 280, 488
AdeI CACNNNGTG 1 cut(s) 794
AfaI GTAC 3 cut(s) 1111, 1133, 1179
AflII CTTAAG 1 cut(s) 845
AflIII ACRYGT 1 cut(s) 123
AjnI CCWGG 3 cut(s) 208, 790, 1124
AluBI AGCT 7 cut(s) 421, 515, 547, 682, 844, 902, 1039
AluI AGCT 7 cut(s) 421, 515, 547, 682, 844, 902, 1039
Alw26I GTCTC 3 cut(s) 567, 906, 916
AlwI GGATC 5 cut(s) 88, 158, 171, 590, 1194
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 2 cut(s) 179, 251
ApeKI GCWGC 6 cut(s) 62, 389, 494, 691, 1238, 1241
ApoI RAATTY 2 cut(s) 280, 488
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AspLEI GCGC 2 cut(s) 761, 1007
AspS9I GGNCC 5 cut(s) 10, 206, 251, 333, 614
AsuC2I CCSGG 2 cut(s) 590, 763
AsuHPI GGTGA 3 cut(s) 731, 1114, 1224
AsuII TTCGAA 1 cut(s) 897
AvaII GGWCC 4 cut(s) 10, 206, 333, 614
BalI TGGCCA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 6 cut(s) 49, 401, 506, 703, 1225, 1228
BccI CCATC 3 cut(s) 71, 698, 1043
BciT130I CCWGG 3 cut(s) 210, 792, 1126
BclI TGATCA 2 cut(s) 684, 943
BcnI CCSGG 2 cut(s) 590, 763
BcoDI GTCTC 3 cut(s) 567, 906, 916
BfaI CTAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 762
BfrI CTTAAG 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 1243
BglII AGATCT 2 cut(s) 304, 805
BisI GCNGC 6 cut(s) 63, 390, 495, 692, 1239, 1242
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 6 cut(s) 64, 391, 496, 693, 1240, 1243
Bme1390I CCNGG 5 cut(s) 210, 590, 763, 792, 1126
Bme18I GGWCC 4 cut(s) 10, 206, 333, 614
BmgT120I GGNCC 5 cut(s) 10, 206, 251, 333, 614
BmiI GGNNCC 6 cut(s) 12, 48, 165, 197, 334, 615
BmrFI CCNGG 5 cut(s) 210, 590, 763, 792, 1126
BmrI ACTGGG 2 cut(s) 100, 320
BmsI GCATC 1 cut(s) 709
BmuI ACTGGG 2 cut(s) 100, 320
BpiI GAAGAC 1 cut(s) 771
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 3 cut(s) 231, 428, 930
Bpu1102I GCTNAGC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 764, 1025
BpuMI CCSGG 2 cut(s) 590, 763
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 4 cut(s) 176, 199, 275, 588
BsaWI WCCGGW 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 95, 326, 913
Bse3DI GCAATG 1 cut(s) 1197
BseBI CCWGG 3 cut(s) 210, 792, 1126
BseDI CCNNGG 4 cut(s) 176, 199, 275, 588
BseGI GGATG 2 cut(s) 709, 1054
BseMI GCAATG 1 cut(s) 1197
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 3 cut(s) 95, 326, 913
BseXI GCAGC 6 cut(s) 49, 401, 506, 703, 1225, 1228
BshFI GGCC 2 cut(s) 181, 253
BshNI GGYRCC 1 cut(s) 46
BsiSI CCGG 3 cut(s) 336, 590, 762
BslFI GGGAC 1 cut(s) 346
BsmAI GTCTC 3 cut(s) 567, 906, 916
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 882
BsnI GGCC 2 cut(s) 181, 253
Bso31I GGTCTC 1 cut(s) 916
Bsp119I TTCGAA 1 cut(s) 897
Bsp143I GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 176
BspANI GGCC 2 cut(s) 181, 253
BspCNI CTCAG 1 cut(s) 691
BspHI TCATGA 1 cut(s) 918
BspLI GGNNCC 6 cut(s) 12, 48, 165, 197, 334, 615
BspMI ACCTGC 1 cut(s) 1243
BspPI GGATC 5 cut(s) 88, 158, 171, 590, 1194
BspT104I TTCGAA 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 1197
BsrI ACTGG 3 cut(s) 95, 326, 913
BssECI CCNNGG 4 cut(s) 176, 199, 275, 588
BssMI GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
BssT1I CCWWGG 3 cut(s) 176, 199, 275
Bst2UI CCWGG 3 cut(s) 210, 792, 1126
Bst4CI ACNGT 4 cut(s) 578, 671, 1094, 1230
Bst6I CTCTTC 3 cut(s) 237, 443, 624
BstAFI CTTAAG 1 cut(s) 845
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 897
BstDEI CTNAG 3 cut(s) 548, 678, 1011
BstDSI CCRYGG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 709, 1054
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 2 cut(s) 761, 1007
BstKTI GATC 9 cut(s) 83, 166, 307, 585, 687, 808, 946, 997, 1189
BstMAI GTCTC 3 cut(s) 567, 906, 916
BstMBI GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
BstMWI GCNNNNNNNGC 4 cut(s) 62, 521, 688, 1247
BstNI CCWGG 3 cut(s) 210, 792, 1126
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 5 cut(s) 208, 588, 761, 790, 1124
BstV1I GCAGC 6 cut(s) 49, 401, 506, 703, 1225, 1228
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 4 cut(s) 163, 304, 582, 805
BstYI RGATCY 4 cut(s) 163, 304, 582, 805
BsuRI GGCC 2 cut(s) 181, 253
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 2 cut(s) 709, 1054
BtsIMutI CAGTG 1 cut(s) 676
BveI ACCTGC 1 cut(s) 1243
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 918
CfoI GCGC 2 cut(s) 761, 1007
Cfr13I GGNCC 5 cut(s) 10, 206, 251, 333, 614
CsiI ACCWGGT 2 cut(s) 790, 1124
Csp6I GTAC 3 cut(s) 1110, 1132, 1178
CspCI CAANNNNNGTGG 2 cut(s) 654, 689
CviAII CATG 6 cut(s) 124, 177, 609, 732, 919, 1026
CviQI GTAC 3 cut(s) 1110, 1132, 1178
DdeI CTNAG 3 cut(s) 548, 678, 1011
DpnI GATC 9 cut(s) 82, 165, 306, 584, 686, 807, 945, 996, 1188
DpnII GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
DraIII CACNNNGTG 1 cut(s) 794
EaeI YGGCCR 1 cut(s) 179
Eam1104I CTCTTC 3 cut(s) 237, 443, 624
EarI CTCTTC 3 cut(s) 237, 443, 624
Eco130I CCWWGG 3 cut(s) 176, 199, 275
Eco31I GGTCTC 1 cut(s) 916
Eco47I GGWCC 4 cut(s) 10, 206, 333, 614
EcoO109I RGGNCCY 2 cut(s) 10, 614
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 208, 790, 1124
EcoT14I CCWWGG 3 cut(s) 176, 199, 275
ErhI CCWWGG 3 cut(s) 176, 199, 275
FaeI CATG 6 cut(s) 127, 180, 612, 735, 922, 1029
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FaqI GGGAC 1 cut(s) 346
FatI CATG 6 cut(s) 123, 176, 608, 731, 918, 1025
FbaI TGATCA 2 cut(s) 684, 943
Fnu4HI GCNGC 6 cut(s) 63, 390, 495, 692, 1239, 1242
FokI GGATG 2 cut(s) 716, 1061
Fsp4HI GCNGC 6 cut(s) 63, 390, 495, 692, 1239, 1242
FspBI CTAG 1 cut(s) 713
FspI TGCGCA 1 cut(s) 1006
GlaI GCGC 2 cut(s) 760, 1006
GluI GCNGC 6 cut(s) 63, 390, 495, 692, 1239, 1242
GsuI CTGGAG 3 cut(s) 231, 428, 930
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 2 cut(s) 181, 253
HapII CCGG 3 cut(s) 336, 590, 762
HhaI GCGC 2 cut(s) 761, 1007
Hin1II CATG 6 cut(s) 127, 180, 612, 735, 922, 1029
Hin6I GCGC 2 cut(s) 759, 1005
HinP1I GCGC 2 cut(s) 759, 1005
HindIII AAGCTT 2 cut(s) 545, 842
HinfI GANTC 7 cut(s) 339, 451, 473, 499, 736, 1053, 1119
HpaII CCGG 3 cut(s) 336, 590, 762
HphI GGTGA 3 cut(s) 731, 1114, 1224
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 85, 110, 886, 1068
Hpy188III TCNNGA 4 cut(s) 219, 445, 809, 919
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 527, 1151
HpyCH4III ACNGT 4 cut(s) 578, 671, 1094, 1230
HpyCH4IV ACGT 2 cut(s) 287, 630
HpyCH4V TGCA 6 cut(s) 295, 494, 566, 722, 880, 1197
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 521, 688, 1247
HpyF3I CTNAG 3 cut(s) 548, 678, 1011
HpySE526I ACGT 2 cut(s) 287, 630
Hsp92II CATG 6 cut(s) 127, 180, 612, 735, 922, 1029
HspAI GCGC 2 cut(s) 759, 1005
Ksp22I TGATCA 2 cut(s) 684, 943
Kzo9I GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
LmnI GCTCC 3 cut(s) 201, 1163, 1255
Lsp1109I GCAGC 6 cut(s) 49, 401, 506, 703, 1225, 1228
LweI GCATC 1 cut(s) 709
MabI ACCWGGT 2 cut(s) 790, 1124
MaeI CTAG 1 cut(s) 713
MaeII ACGT 2 cut(s) 287, 630
MaeIII GTNAC 5 cut(s) 737, 767, 865, 970, 1230
MalI GATC 9 cut(s) 82, 165, 306, 584, 686, 807, 945, 996, 1188
MboI GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
MboII GAAGA 7 cut(s) 254, 460, 542, 605, 611, 728, 771
MflI RGATCY 4 cut(s) 163, 304, 582, 805
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 7 cut(s) 183, 265, 280, 488, 727, 930, 1061
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 5 cut(s) 460, 482, 493, 745, 1047
MmeI TCCRAC 4 cut(s) 133, 560, 909, 1081
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 3 cut(s) 699, 834, 846
Msp20I TGGCCA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 682
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 3 cut(s) 336, 590, 762
MspR9I CCNGG 5 cut(s) 210, 590, 763, 792, 1126
Mva1269I GAATGC 1 cut(s) 882
MvaI CCWGG 3 cut(s) 210, 792, 1126
MwoI GCNNNNNNNGC 4 cut(s) 62, 521, 688, 1247
NciI CCSGG 2 cut(s) 590, 763
NcoI CCATGG 1 cut(s) 176
NdeII GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
NlaIII CATG 6 cut(s) 127, 180, 612, 735, 922, 1029
NlaIV GGNNCC 6 cut(s) 12, 48, 165, 197, 334, 615
NmuCI GTSAC 4 cut(s) 737, 865, 970, 1230
NsbI TGCGCA 1 cut(s) 1006
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 897
PagI TCATGA 1 cut(s) 918
PaqCI CACCTGC 1 cut(s) 1243
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 882
PfeI GAWTC 2 cut(s) 339, 1119
PkrI GCNGC 6 cut(s) 64, 391, 496, 693, 1240, 1243
PleI GAGTC 5 cut(s) 459, 481, 493, 744, 1047
PpsI GAGTC 5 cut(s) 459, 481, 493, 744, 1047
PpuMI RGGWCCY 2 cut(s) 10, 614
PscI ACATGT 1 cut(s) 123
Psp5II RGGWCCY 2 cut(s) 10, 614
Psp6I CCWGG 3 cut(s) 208, 790, 1124
PspGI CCWGG 3 cut(s) 208, 790, 1124
PspN4I GGNNCC 6 cut(s) 12, 48, 165, 197, 334, 615
PspPI GGNCC 5 cut(s) 10, 206, 251, 333, 614
PspPPI RGGWCCY 2 cut(s) 10, 614
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 4 cut(s) 163, 304, 582, 805
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 3 cut(s) 1111, 1133, 1179
RsaNI GTAC 3 cut(s) 1110, 1132, 1178
SaqAI TTAA 3 cut(s) 699, 834, 846
SatI GCNGC 6 cut(s) 63, 390, 495, 692, 1239, 1242
Sau3AI GATC 9 cut(s) 80, 163, 304, 582, 684, 805, 943, 994, 1186
Sau96I GGNCC 5 cut(s) 10, 206, 251, 333, 614
SchI GAGTC 5 cut(s) 460, 482, 493, 745, 1047
ScrFI CCNGG 5 cut(s) 210, 590, 763, 792, 1126
SexAI ACCWGGT 2 cut(s) 790, 1124
SfaNI GCATC 1 cut(s) 709
SfuI TTCGAA 1 cut(s) 897
SinI GGWCC 4 cut(s) 10, 206, 333, 614
SmlI CTYRAG 3 cut(s) 743, 845, 1040
SmoI CTYRAG 3 cut(s) 743, 845, 1040
Sse9I AATT 7 cut(s) 183, 265, 280, 488, 727, 930, 1061
SspMI CTAG 1 cut(s) 713
StyD4I CCNGG 5 cut(s) 208, 588, 761, 790, 1124
StyI CCWWGG 3 cut(s) 176, 199, 275
TaaI ACNGT 4 cut(s) 578, 671, 1094, 1230
TaiI ACGT 2 cut(s) 290, 633
TaqI TCGA 1 cut(s) 897
TasI AATT 7 cut(s) 183, 265, 280, 488, 727, 930, 1061
TatI WGTACW 1 cut(s) 1109
TfiI GAWTC 2 cut(s) 339, 1119
Tru1I TTAA 3 cut(s) 699, 834, 846
Tru9I TTAA 3 cut(s) 699, 834, 846
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 4 cut(s) 737, 865, 970, 1230
TseI GCWGC 6 cut(s) 62, 389, 494, 691, 1238, 1241
Tsp45I GTSAC 4 cut(s) 737, 865, 970, 1230
TspDTI ATGAA 5 cut(s) 451, 597, 720, 771, 907
TspRI CASTG 1 cut(s) 676
Vha464I CTTAAG 1 cut(s) 845
VpaK11BI GGWCC 4 cut(s) 10, 206, 333, 614
XapI RAATTY 2 cut(s) 280, 488
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 2 cut(s) 189, 206
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.