Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

29073232 .. 29074078

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG181900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCGAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

5.57

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 137	7.5e-37	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	35, 48
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	157, 365
AcuI	CTGAAG	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	148, 162, 304, 407, 469
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	5 cut(s)	92, 298, 392, 424, 437
AluI	AGCT	5 cut(s)	92, 298, 392, 424, 437
AlwI	GGATC	2 cut(s)	35, 48
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	56, 128
ApeKI	GCWGC	2 cut(s)	266, 371
ApoI	RAATTY	2 cut(s)	157, 365
AspS9I	GGNCC	3 cut(s)	83, 128, 447
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	83, 447
BalI	TGGCCA	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	278, 383
BciT130I	CCWGG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	267, 372
BlsI	GCNGC	2 cut(s)	268, 373
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	83, 447
BmgT120I	GGNCC	3 cut(s)	83, 128, 447
BmiI	GGNNCC	4 cut(s)	42, 74, 211, 448
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	2 cut(s)	108, 305
Bpu14I	TTCGAA	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	53, 76, 152
BsaWI	WCCGGW	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	53, 76, 152
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	278, 383
BshFI	GGCC	2 cut(s)	58, 130
BsiSI	CCGG	1 cut(s)	213
BsnI	GGCC	2 cut(s)	58, 130
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	40, 181
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	58, 130
BspLI	GGNNCC	4 cut(s)	42, 74, 211, 448
BspPI	GGATC	2 cut(s)	35, 48
BspT104I	TTCGAA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	53, 76, 152
BssMI	GATC	2 cut(s)	40, 181
BssT1I	CCWWGG	3 cut(s)	53, 76, 152
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	3 cut(s)	114, 320, 457
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	43, 184
BstMBI	GATC	2 cut(s)	40, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	278, 383
BstX2I	RGATCY	2 cut(s)	40, 181
BstYI	RGATCY	2 cut(s)	40, 181
BsuRI	GGCC	2 cut(s)	58, 130
BtgI	CCRYGG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	83, 128, 447
CviAII	CATG	2 cut(s)	54, 442
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	2 cut(s)	42, 183
DpnII	GATC	2 cut(s)	40, 181
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	114, 320, 457
EarI	CTCTTC	3 cut(s)	114, 320, 457
Eco130I	CCWWGG	3 cut(s)	53, 76, 152
Eco47I	GGWCC	2 cut(s)	83, 447
Eco57I	CTGAAG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	3 cut(s)	53, 76, 152
ErhI	CCWWGG	3 cut(s)	53, 76, 152
FaeI	CATG	2 cut(s)	57, 445
FaiI	YATR	5 cut(s)	18, 55, 357, 395, 443
FatI	CATG	2 cut(s)	53, 441
Fnu4HI	GCNGC	2 cut(s)	267, 372
Fsp4HI	GCNGC	2 cut(s)	267, 372
GluI	GCNGC	2 cut(s)	267, 372
GsuI	CTGGAG	2 cut(s)	108, 305
HaeIII	GGCC	2 cut(s)	58, 130
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	2 cut(s)	57, 445
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	216, 328, 350, 376
HpaII	CCGG	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	96, 322
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	404
HpyCH4IV	ACGT	2 cut(s)	164, 463
HpyCH4V	TGCA	2 cut(s)	172, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	2 cut(s)	164, 463
Hsp92II	CATG	2 cut(s)	57, 445
Kzo9I	GATC	2 cut(s)	40, 181
LmnI	GCTCC	3 cut(s)	78, 89, 434
LpnPI	CCDG	7 cut(s)	55, 72, 81, 99, 216, 226, 335
Lsp1109I	GCAGC	2 cut(s)	278, 383
MaeII	ACGT	2 cut(s)	164, 463
MalI	GATC	2 cut(s)	42, 183
MboI	GATC	2 cut(s)	40, 181
MboII	GAAGA	4 cut(s)	131, 337, 419, 444
MflI	RGATCY	2 cut(s)	40, 181
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	4 cut(s)	60, 142, 157, 365
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	3 cut(s)	337, 359, 370
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	31, 55, 115, 223, 256, 329, 342, 353, 460
Mox20I	TGGCCA	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	58
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	40, 181
NlaIII	CATG	2 cut(s)	57, 445
NlaIV	GGNNCC	4 cut(s)	42, 74, 211, 448
NspV	TTCGAA	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	268, 373
PleI	GAGTC	3 cut(s)	336, 358, 370
PpsI	GAGTC	3 cut(s)	336, 358, 370
PpuMI	RGGWCCY	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	42, 74, 211, 448
PspPI	GGNCC	3 cut(s)	83, 128, 447
PspPPI	RGGWCCY	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	40, 181
SatI	GCNGC	2 cut(s)	267, 372
Sau3AI	GATC	2 cut(s)	40, 181
Sau96I	GGNCC	3 cut(s)	83, 128, 447
SchI	GAGTC	3 cut(s)	337, 359, 370
ScrFI	CCNGG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	2 cut(s)	83, 447
Sse9I	AATT	4 cut(s)	60, 142, 157, 365
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	3 cut(s)	53, 76, 152
TaiI	ACGT	2 cut(s)	167, 466
TaqI	TCGA	2 cut(s)	47, 117
TasI	AATT	4 cut(s)	60, 142, 157, 365
TfiI	GAWTC	1 cut(s)	216
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	266, 371
TspDTI	ATGAA	2 cut(s)	328, 430
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	83, 447
XapI	RAATTY	2 cut(s)	157, 365
XcmI	CCANNNNNNNNNTGG	2 cut(s)	66, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.