Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

30176703 .. 30223723

Gene Structure 47021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG173200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCGGCGATGGAGATCAATAGTTCAATTTCGTGCCCTTCAACTCCTTGTTGGATCTCCGAGAGGTCGTTCCTCACTGACCACTTCCATCAGGTTCCTCCTCTTCATCTTCTCTTTACTCTTTACTCTAACCTCCTCCTCCTCCTCCTCCTCCTCCTTTACTTTCCATTTGAAATTTCCGTTTGTGTAGGATTCCAAGATGCCATTGGCTGTTACAATGTTGCTGTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGACTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGACACTGTTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATGCGTACCTGGGTATATTAGTGAGGTGGGTCTATGAAGGAGTCATTGATGATCCTTATGGTGAATTTTTCATTGCTGAGAACAAATCTCTTCAAAAGGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGACATCTTTATGTAGAAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCGAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

354

Amino Acids

39.89

Weight (kDa)

6.26

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	105 - 168	1e-14	Gamma tubulin complex component N-terminal
Peptidase_S10	PF00450	193 - 333	2.6e-37	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	62, 452, 623, 636
AcoI	YGGCCR	1 cut(s)	644
AcsI	RAATTY	4 cut(s)	174, 470, 745, 953
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	2 cut(s)	257, 413
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	9 cut(s)	27, 42, 173, 500, 736, 750, 892, 995, 1057
AjnI	CCWGG	2 cut(s)	414, 673
AluBI	AGCT	7 cut(s)	262, 314, 680, 886, 980, 1012, 1025
AluI	AGCT	7 cut(s)	262, 314, 680, 886, 980, 1012, 1025
Alw26I	GTCTC	2 cut(s)	284, 313
AlwI	GGATC	4 cut(s)	62, 452, 623, 636
AlwNI	CAGNNNCTG	1 cut(s)	860
AoxI	GGCC	3 cut(s)	345, 644, 716
ApeKI	GCWGC	3 cut(s)	530, 854, 959
ApoI	RAATTY	4 cut(s)	174, 470, 745, 953
AspS9I	GGNCC	3 cut(s)	671, 716, 1035
AsuHPI	GGTGA	2 cut(s)	368, 479
AsuII	TTCGAA	1 cut(s)	705
AsuNHI	GCTAGC	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	671, 1035
BaeGI	GKGCMC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	646
BamHI	GGATCC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	517, 866, 971
BccI	CCATC	4 cut(s)	4, 96, 382, 548
BciT130I	CCWGG	2 cut(s)	416, 675
BcoDI	GTCTC	2 cut(s)	284, 313
BfaI	CTAG	3 cut(s)	300, 380, 402
BfmI	CTRYAG	1 cut(s)	531
BglII	AGATCT	1 cut(s)	769
BisI	GCNGC	3 cut(s)	531, 855, 960
BlsI	GCNGC	3 cut(s)	532, 856, 961
Bme1390I	CCNGG	2 cut(s)	416, 675
Bme18I	GGWCC	2 cut(s)	671, 1035
BmgT120I	GGNCC	3 cut(s)	671, 716, 1035
BmiI	GGNNCC	5 cut(s)	96, 630, 662, 799, 1036
BmrFI	CCNGG	2 cut(s)	416, 675
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	405
BmuI	ACTGGG	1 cut(s)	785
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	2 cut(s)	696, 893
Bpu10I	CCTNAGC	2 cut(s)	263, 342
Bpu14I	TTCGAA	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	14
BsaJI	CCNNGG	5 cut(s)	348, 415, 641, 664, 740
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	791
Bse3DI	GCAATG	3 cut(s)	374, 412, 477
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	416, 675
BseDI	CCNNGG	5 cut(s)	348, 415, 641, 664, 740
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	3 cut(s)	374, 412, 477
BseMII	CTCAG	3 cut(s)	279, 324, 474
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	8 cut(s)	90, 125, 128, 131, 134, 137, 140, 143
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	517, 866, 971
BshFI	GGCC	3 cut(s)	347, 646, 718
BsiSI	CCGG	1 cut(s)	801
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	284, 313
BsmBI	CGTCTC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	347, 646, 718
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	5 cut(s)	15, 54, 457, 628, 769
Bsp19I	CCATGG	2 cut(s)	348, 641
BspANI	GGCC	3 cut(s)	347, 646, 718
BspCNI	CTCAG	3 cut(s)	280, 323, 475
BspLI	GGNNCC	5 cut(s)	96, 630, 662, 799, 1036
BspMAI	CTGCAG	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	405
BspPI	GGATC	4 cut(s)	62, 452, 623, 636
BspT104I	TTCGAA	1 cut(s)	705
BsrDI	GCAATG	3 cut(s)	374, 412, 477
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	5 cut(s)	348, 415, 641, 664, 740
BssMI	GATC	5 cut(s)	15, 54, 457, 628, 769
BssT1I	CCWWGG	4 cut(s)	348, 641, 664, 740
Bst2UI	CCWGG	2 cut(s)	416, 675
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	6 cut(s)	108, 264, 501, 702, 908, 1045
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	6 cut(s)	263, 288, 310, 342, 483, 1013
BstDSI	CCRYGG	2 cut(s)	348, 641
BstKTI	GATC	5 cut(s)	18, 57, 460, 631, 772
BstMAI	GTCTC	2 cut(s)	284, 313
BstMBI	GATC	5 cut(s)	15, 54, 457, 628, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 407, 986
BstNI	CCWGG	2 cut(s)	416, 675
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	414, 673
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	517, 866, 971
BstX2I	RGATCY	3 cut(s)	54, 628, 769
BstYI	RGATCY	3 cut(s)	54, 628, 769
BsuRI	GGCC	3 cut(s)	347, 646, 718
BtgI	CCRYGG	2 cut(s)	348, 641
BtgZI	GCGATG	2 cut(s)	23, 567
BtsIMutI	CAGTG	3 cut(s)	75, 360, 858
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	1 cut(s)	860
Cfr13I	GGNCC	3 cut(s)	671, 716, 1035
Csp6I	GTAC	2 cut(s)	256, 412
CviAII	CATG	4 cut(s)	349, 589, 642, 1030
CviQI	GTAC	2 cut(s)	256, 412
DdeI	CTNAG	6 cut(s)	263, 288, 310, 342, 483, 1013
DpnI	GATC	5 cut(s)	17, 56, 459, 630, 771
DpnII	GATC	5 cut(s)	15, 54, 457, 628, 769
EaeI	YGGCCR	1 cut(s)	644
Eam1104I	CTCTTC	6 cut(s)	108, 264, 501, 702, 908, 1045
EarI	CTCTTC	6 cut(s)	108, 264, 501, 702, 908, 1045
Eco130I	CCWWGG	4 cut(s)	348, 641, 664, 740
Eco47I	GGWCC	2 cut(s)	671, 1035
Eco57I	CTGAAG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	1035
EcoRI	GAATTC	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	414, 673
EcoT14I	CCWWGG	4 cut(s)	348, 641, 664, 740
ErhI	CCWWGG	4 cut(s)	348, 641, 664, 740
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	4 cut(s)	352, 592, 645, 1033
FatI	CATG	4 cut(s)	348, 588, 641, 1029
Fnu4HI	GCNGC	3 cut(s)	531, 855, 960
Fsp4HI	GCNGC	3 cut(s)	531, 855, 960
FspBI	CTAG	3 cut(s)	300, 380, 402
GluI	GCNGC	3 cut(s)	531, 855, 960
GsuI	CTGGAG	2 cut(s)	696, 893
HaeIII	GGCC	3 cut(s)	347, 646, 718
HapII	CCGG	1 cut(s)	801
Hin1II	CATG	4 cut(s)	352, 592, 645, 1033
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	7 cut(s)	192, 303, 447, 804, 916, 938, 964
HpaII	CCGG	1 cut(s)	801
HphI	GGTGA	2 cut(s)	368, 479
Hpy166II	GTNNAC	1 cut(s)	671
Hpy188I	TCNGA	2 cut(s)	61, 231
Hpy188III	TCNNGA	2 cut(s)	684, 910
Hpy8I	GTNNAC	1 cut(s)	671
HpyAV	CCTTC	3 cut(s)	48, 437, 992
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	752, 1051
HpyCH4V	TGCA	3 cut(s)	533, 760, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 407, 986
HpyF3I	CTNAG	6 cut(s)	263, 288, 310, 342, 483, 1013
HpySE526I	ACGT	2 cut(s)	752, 1051
Hsp92II	CATG	4 cut(s)	352, 592, 645, 1033
Kzo9I	GATC	5 cut(s)	15, 54, 457, 628, 769
LmnI	GCTCC	3 cut(s)	666, 677, 1022
Lsp1109I	GCAGC	3 cut(s)	517, 866, 971
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	300, 380, 402
MaeII	ACGT	2 cut(s)	752, 1051
MaeIII	GTNAC	2 cut(s)	212, 356
MalI	GATC	5 cut(s)	17, 56, 459, 630, 771
MboI	GATC	5 cut(s)	15, 54, 457, 628, 769
MboII	GAAGA	8 cut(s)	95, 101, 281, 488, 719, 925, 1007, 1032
MflI	RGATCY	3 cut(s)	54, 628, 769
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	646
MluCI	AATT	7 cut(s)	27, 174, 470, 648, 730, 745, 953
MluNI	TGGCCA	1 cut(s)	646
MlyI	GAGTC	5 cut(s)	297, 456, 925, 947, 958
MmeI	TCCRAC	2 cut(s)	32, 775
Mox20I	TGGCCA	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	646
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	571
Msp20I	TGGCCA	1 cut(s)	646
MspI	CCGG	1 cut(s)	801
MspR9I	CCNGG	2 cut(s)	416, 675
MvaI	CCWGG	2 cut(s)	416, 675
MwoI	GCNNNNNNNGC	3 cut(s)	398, 407, 986
NcoI	CCATGG	2 cut(s)	348, 641
NdeII	GATC	5 cut(s)	15, 54, 457, 628, 769
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	4 cut(s)	352, 592, 645, 1033
NlaIV	GGNNCC	5 cut(s)	96, 630, 662, 799, 1036
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	705
PciI	ACATGT	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	192, 804
PkrI	GCNGC	3 cut(s)	532, 856, 961
PleI	GAGTC	5 cut(s)	297, 455, 924, 946, 958
PpsI	GAGTC	5 cut(s)	297, 455, 924, 946, 958
PpuMI	RGGWCCY	1 cut(s)	1035
PscI	ACATGT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	1035
Psp6I	CCWGG	2 cut(s)	414, 673
PspGI	CCWGG	2 cut(s)	414, 673
PspN4I	GGNNCC	5 cut(s)	96, 630, 662, 799, 1036
PspPI	GGNCC	3 cut(s)	671, 716, 1035
PspPPI	RGGWCCY	1 cut(s)	1035
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	3 cut(s)	54, 628, 769
RsaI	GTAC	2 cut(s)	257, 413
RsaNI	GTAC	2 cut(s)	256, 412
RseI	CAYNNNNRTG	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	531, 855, 960
Sau3AI	GATC	5 cut(s)	15, 54, 457, 628, 769
Sau96I	GGNCC	3 cut(s)	671, 716, 1035
SchI	GAGTC	5 cut(s)	297, 456, 925, 947, 958
ScrFI	CCNGG	2 cut(s)	416, 675
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	2 cut(s)	671, 1035
SmiMI	CAYNNNNRTG	1 cut(s)	571
Sse9I	AATT	7 cut(s)	27, 174, 470, 648, 730, 745, 953
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	3 cut(s)	300, 380, 402
StyD4I	CCNGG	2 cut(s)	414, 673
StyI	CCWWGG	4 cut(s)	348, 641, 664, 740
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	755, 1054
TaqI	TCGA	2 cut(s)	635, 705
TasI	AATT	7 cut(s)	27, 174, 470, 648, 730, 745, 953
TfiI	GAWTC	2 cut(s)	192, 804
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	3 cut(s)	82, 367, 865
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	3 cut(s)	530, 854, 959
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	6 cut(s)	95, 296, 456, 466, 916, 1018
TspGWI	ACGGA	2 cut(s)	169, 577
TspRI	CASTG	3 cut(s)	82, 367, 865
VpaK11BI	GGWCC	2 cut(s)	671, 1035
XapI	RAATTY	4 cut(s)	174, 470, 745, 953
XceI	RCATGY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	3 cut(s)	203, 654, 671
XspI	CTAG	3 cut(s)	300, 380, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.