Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

15145459 .. 15149784

Gene Structure 4326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTGTCTTTTGGTATTGCATCAGAAATCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGATAACCCAATTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAACTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGATGATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGACGTGGATTTCTATAATTTCCTATTGGATTCAGGAATGGACCCAGTGTCAGTGTCTGTGACAACCACTGAAATATCACCAAAAAAATTTACATTTACAAGATATACAAGATATCTAAATTCCTTGAGGCAGTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACATTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGGCAACTCTTGCTCTTGCTATATTTCCACATTGTAGGCTCAAATGCTTGGGATCGAGAAAACTTTGCCAAATACATCGGTTGGATTTTTGTTTCTCATCGGTTTTTGACCGATGTCTGGGGCTATAATTCTAGTAGTGAACTGTTCCACTTCTATAATCATGCTGACTACATA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

335

Amino Acids

37.93

Weight (kDa)

5.53

Isoelectric Point (pI)

25.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	41 - 280	3.4e-18	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	68, 81, 891
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	290, 578, 610
AdeI	CACNNNGTG	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	948
AflII	CTTAAG	1 cut(s)	692
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	229, 357, 670
AhdI	GACNNNNNGTC	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	5 cut(s)	223, 317, 403, 691, 749
AluI	AGCT	5 cut(s)	223, 317, 403, 691, 749
Alw26I	GTCTC	2 cut(s)	753, 763
AlwI	GGATC	3 cut(s)	68, 81, 891
AlwNI	CAGNNNCTG	2 cut(s)	197, 548
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	3 cut(s)	191, 296, 412
ApoI	RAATTY	3 cut(s)	290, 578, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	3 cut(s)	116, 335, 532
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	452, 561
AsuII	TTCGAA	1 cut(s)	744
AvaII	GGWCC	3 cut(s)	116, 335, 532
BalI	TGGCCA	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	203, 308, 424
BccI	CCATC	2 cut(s)	365, 419
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	2 cut(s)	405, 790
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	753, 763
BfaI	CTAG	1 cut(s)	963
BfoI	RGCGCY	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	692
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	3 cut(s)	192, 297, 413
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	3 cut(s)	193, 298, 414
Bme1390I	CCNGG	2 cut(s)	484, 639
Bme18I	GGWCC	3 cut(s)	116, 335, 532
BmeRI	GACNNNNNGTC	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	3 cut(s)	116, 335, 532
BmiI	GGNNCC	5 cut(s)	75, 107, 136, 336, 534
BmrFI	CCNGG	2 cut(s)	484, 639
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	28, 430
BmuI	ACTGGG	1 cut(s)	530
BoxI	GACNNNNGTC	1 cut(s)	944
BpiI	GAAGAC	1 cut(s)	618
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	485, 637
BpuMI	CCSGG	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	2 cut(s)	86, 109
BsaWI	WCCGGW	2 cut(s)	137, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	948
Bse1I	ACTGG	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	86, 109
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	948
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	203, 308, 424
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	138, 483, 756
BslI	CCNNNNNNNGG	1 cut(s)	948
BsmAI	GTCTC	2 cut(s)	753, 763
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	763
Bsp119I	TTCGAA	1 cut(s)	744
Bsp143I	GATC	5 cut(s)	73, 405, 652, 790, 883
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	86
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	5 cut(s)	75, 107, 136, 336, 534
BspPI	GGATC	3 cut(s)	68, 81, 891
BspT104I	TTCGAA	1 cut(s)	744
BspTI	CTTAAG	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	86, 109
BssMI	GATC	5 cut(s)	73, 405, 652, 790, 883
BssT1I	CCWWGG	2 cut(s)	86, 109
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	392, 975
Bst6I	CTCTTC	2 cut(s)	245, 345
BstAFI	CTTAAG	1 cut(s)	692
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	5 cut(s)	76, 408, 655, 793, 886
BstMAI	GTCTC	2 cut(s)	753, 763
BstMBI	GATC	5 cut(s)	73, 405, 652, 790, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 841
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	37
BstPAI	GACNNNNGTC	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	482, 637
BstV1I	GCAGC	3 cut(s)	203, 308, 424
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	2 cut(s)	73, 652
BstYI	RGATCY	2 cut(s)	73, 652
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	86
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	5 cut(s)	195, 397, 543, 549, 558
CaiI	CAGNNNCTG	2 cut(s)	197, 548
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	116, 335, 532
CsiI	ACCWGGT	1 cut(s)	637
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	6 cut(s)	34, 87, 330, 453, 766, 992
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	5 cut(s)	75, 407, 654, 792, 885
DpnII	GATC	5 cut(s)	73, 405, 652, 790, 883
DraIII	CACNNNGTG	1 cut(s)	641
DriI	GACNNNNNGTC	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	245, 345
Eam1105I	GACNNNNNGTC	1 cut(s)	538
EarI	CTCTTC	2 cut(s)	245, 345
Eco130I	CCWWGG	2 cut(s)	86, 109
Eco31I	GGTCTC	1 cut(s)	763
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	3 cut(s)	116, 335, 532
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	605
EcoT14I	CCWWGG	2 cut(s)	86, 109
ErhI	CCWWGG	2 cut(s)	86, 109
FaeI	CATG	6 cut(s)	37, 90, 333, 456, 769, 995
FatI	CATG	6 cut(s)	33, 86, 329, 452, 765, 991
FbaI	TGATCA	2 cut(s)	405, 790
Fnu4HI	GCNGC	3 cut(s)	192, 297, 413
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	192, 297, 413
FspBI	CTAG	1 cut(s)	963
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	3 cut(s)	192, 297, 413
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	3 cut(s)	138, 483, 756
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	6 cut(s)	37, 90, 333, 456, 769, 995
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	6 cut(s)	141, 253, 275, 301, 457, 521
HpaII	CCGG	3 cut(s)	138, 483, 756
HphI	GGTGA	2 cut(s)	452, 561
Hpy166II	GTNNAC	2 cut(s)	116, 971
Hpy188I	TCNGA	2 cut(s)	24, 733
Hpy188III	TCNNGA	5 cut(s)	247, 525, 656, 766, 887
Hpy8I	GTNNAC	2 cut(s)	116, 971
Hpy99I	CGWCG	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	392, 975
HpyCH4IV	ACGT	2 cut(s)	351, 495
HpyCH4V	TGCA	4 cut(s)	19, 296, 443, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 841
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	351, 495
Hsp92II	CATG	6 cut(s)	37, 90, 333, 456, 769, 995
HspAI	GCGC	1 cut(s)	480
Ksp22I	TGATCA	2 cut(s)	405, 790
Kzo9I	GATC	5 cut(s)	73, 405, 652, 790, 883
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	3 cut(s)	203, 308, 424
LweI	GCATC	2 cut(s)	28, 430
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	2 cut(s)	351, 495
MaeIII	GTNAC	5 cut(s)	458, 488, 550, 712, 817
MalI	GATC	5 cut(s)	75, 407, 654, 792, 885
MboI	GATC	5 cut(s)	73, 405, 652, 790, 883
MboII	GAAGA	4 cut(s)	262, 332, 449, 618
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	2 cut(s)	73, 652
MlsI	TGGCCA	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	4 cut(s)	262, 284, 295, 466
MmeI	TCCRAC	2 cut(s)	756, 893
Mox20I	TGGCCA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	3 cut(s)	420, 681, 693
Msp20I	TGGCCA	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	403
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	3 cut(s)	138, 483, 756
MspR9I	CCNGG	2 cut(s)	484, 639
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	409, 841
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	5 cut(s)	73, 405, 652, 790, 883
NlaIII	CATG	6 cut(s)	37, 90, 333, 456, 769, 995
NlaIV	GGNNCC	5 cut(s)	75, 107, 136, 336, 534
NmuCI	GTSAC	4 cut(s)	458, 550, 712, 817
NspI	RCATGY	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	744
PagI	TCATGA	1 cut(s)	765
PciI	ACATGT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	2 cut(s)	141, 521
PkrI	GCNGC	3 cut(s)	193, 298, 414
PleI	GAGTC	4 cut(s)	261, 283, 295, 465
PpsI	GAGTC	4 cut(s)	261, 283, 295, 465
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	33
PshAI	GACNNNNGTC	1 cut(s)	944
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	5 cut(s)	75, 107, 136, 336, 534
PspPI	GGNCC	3 cut(s)	116, 335, 532
PspPPI	RGGWCCY	1 cut(s)	335
PstNI	CAGNNNCTG	2 cut(s)	197, 548
PsuI	RGATCY	2 cut(s)	73, 652
PvuII	CAGCTG	1 cut(s)	403
SaqAI	TTAA	3 cut(s)	420, 681, 693
SatI	GCNGC	3 cut(s)	192, 297, 413
Sau3AI	GATC	5 cut(s)	73, 405, 652, 790, 883
Sau96I	GGNCC	3 cut(s)	116, 335, 532
SchI	GAGTC	4 cut(s)	262, 284, 295, 466
ScrFI	CCNGG	2 cut(s)	484, 639
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	28, 430
SfuI	TTCGAA	1 cut(s)	744
SinI	GGWCC	3 cut(s)	116, 335, 532
SmlI	CTYRAG	3 cut(s)	464, 616, 692
SmoI	CTYRAG	3 cut(s)	464, 616, 692
SspMI	CTAG	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	482, 637
StyI	CCWWGG	2 cut(s)	86, 109
TaaI	ACNGT	2 cut(s)	392, 975
TaiI	ACGT	2 cut(s)	354, 498
TaqI	TCGA	2 cut(s)	744, 886
TaqII	GACCGA	1 cut(s)	956
TfiI	GAWTC	2 cut(s)	141, 521
Tru1I	TTAA	3 cut(s)	420, 681, 693
Tru9I	TTAA	3 cut(s)	420, 681, 693
TscAI	CASTG	5 cut(s)	202, 397, 543, 549, 565
TseFI	GTSAC	4 cut(s)	458, 550, 712, 817
TseI	GCWGC	3 cut(s)	191, 296, 412
Tsp45I	GTSAC	4 cut(s)	458, 550, 712, 817
TspDTI	ATGAA	5 cut(s)	253, 318, 441, 618, 754
TspRI	CASTG	5 cut(s)	202, 397, 543, 549, 565
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	116, 335, 532
XapI	RAATTY	3 cut(s)	290, 578, 610
XceI	RCATGY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XspI	CTAG	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.