Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

38962745 .. 38970118

Gene Structure 7374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCCTACTACCAAATTTATTCAGATTACCTTATTACCATAAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAACTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGATGATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGACGTGGATTTCTATAATTTCCTATTGGATTCAGGAATGGACCCAGTGTCAGTGTCTGTGACAACCACTGAAATATCACCAAAAAAATTTACATTTACAAGATATACAAGATATCTAAATTCCTTGAGGCAGTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACATTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGGCAAGTCCGCATTGAAGTAGCCGACTACTTACAGACTCTGTTTGCACAGTACCTACATCCACACTGTTGTAGGGGTGAGCTTTCGTCCTCGCTGCTCATTAGGGACTTCACCCCGTACCATCGACAATTTCATTCATCAACCAAAATCATTGCAAACCAAATCACTACTTCAATTCCGATTAATAACCATTTTCTTAATCTTTACACTTTCACCTCTCCAATAACTTCTCCCTGTTCTTTACTTTCAAACCAAACTCCATGCATAACAACACCCATCCGGCAACAGCAACTAAAATTCTCCAAGTCTAAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

425

Amino Acids

47.73

Weight (kDa)

6.4

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	6 - 322	1.5e-43	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	967
AclWI	GGATC	2 cut(s)	86, 99
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	6 cut(s)	15, 208, 416, 704, 736, 1253
AcuI	CTGAAG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	1010, 1076
AflII	CTTAAG	1 cut(s)	818
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	8 cut(s)	199, 213, 355, 483, 796, 974, 1131, 1206
AhdI	GACNNNNNGTC	1 cut(s)	664
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	136, 763
AluBI	AGCT	7 cut(s)	143, 349, 443, 529, 817, 875, 1039
AluI	AGCT	7 cut(s)	143, 349, 443, 529, 817, 875, 1039
Alw26I	GTCTC	2 cut(s)	879, 889
AlwI	GGATC	2 cut(s)	86, 99
AlwNI	CAGNNNCTG	3 cut(s)	323, 674, 997
AoxI	GGCC	3 cut(s)	3, 107, 179
ApeKI	GCWGC	4 cut(s)	317, 422, 538, 1051
ApoI	RAATTY	6 cut(s)	15, 208, 416, 704, 736, 1253
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
AseI	ATTAAT	1 cut(s)	1140
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	4 cut(s)	134, 179, 461, 658
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	5 cut(s)	578, 687, 1046, 1060, 1162
AsuII	TTCGAA	2 cut(s)	168, 870
AvaII	GGWCC	3 cut(s)	134, 461, 658
BalI	TGGCCA	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	329, 434, 550, 1038
BccI	CCATC	4 cut(s)	491, 545, 1086, 1241
BciT130I	CCWGG	2 cut(s)	138, 765
BclI	TGATCA	2 cut(s)	531, 916
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	879, 889
BfoI	RGCGCY	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	818
BglII	AGATCT	2 cut(s)	232, 778
BisI	GCNGC	4 cut(s)	318, 423, 539, 1052
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	4 cut(s)	319, 424, 540, 1053
Bme1390I	CCNGG	3 cut(s)	138, 610, 765
Bme18I	GGWCC	3 cut(s)	134, 461, 658
BmeRI	GACNNNNNGTC	1 cut(s)	664
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	4 cut(s)	134, 179, 461, 658
BmiI	GGNNCC	5 cut(s)	93, 125, 262, 462, 660
BmrFI	CCNGG	3 cut(s)	138, 610, 765
BmrI	ACTGGG	2 cut(s)	248, 656
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	2 cut(s)	248, 656
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	2 cut(s)	159, 356
Bpu1102I	GCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	2 cut(s)	168, 870
BpuEI	CTTGAG	2 cut(s)	611, 763
BpuMI	CCSGG	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	889
BsaJI	CCNNGG	3 cut(s)	104, 127, 203
BsaWI	WCCGGW	2 cut(s)	263, 881
Bse1I	ACTGG	2 cut(s)	254, 662
Bse3DI	GCAATG	1 cut(s)	1107
BseBI	CCWGG	2 cut(s)	138, 765
BseDI	CCNNGG	3 cut(s)	104, 127, 203
BseGI	GGATG	3 cut(s)	556, 1015, 1233
BseMI	GCAATG	1 cut(s)	1107
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	2 cut(s)	254, 662
BseXI	GCAGC	4 cut(s)	329, 434, 550, 1038
BshFI	GGCC	3 cut(s)	5, 109, 181
BsiSI	CCGG	4 cut(s)	264, 609, 882, 1237
BslFI	GGGAC	1 cut(s)	1076
BsmAI	GTCTC	2 cut(s)	879, 889
BsmFI	GGGAC	1 cut(s)	1076
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	3 cut(s)	5, 109, 181
Bso31I	GGTCTC	1 cut(s)	889
Bsp119I	TTCGAA	2 cut(s)	168, 870
Bsp143I	GATC	5 cut(s)	91, 232, 531, 778, 916
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	967
BspANI	GGCC	3 cut(s)	5, 109, 181
BspCNI	CTCAG	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	5 cut(s)	93, 125, 262, 462, 660
BspPI	GGATC	2 cut(s)	86, 99
BspT104I	TTCGAA	2 cut(s)	168, 870
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	1107
BsrI	ACTGG	2 cut(s)	254, 662
BssECI	CCNNGG	3 cut(s)	104, 127, 203
BssMI	GATC	5 cut(s)	91, 232, 531, 778, 916
BssT1I	CCWWGG	3 cut(s)	104, 127, 203
Bst2UI	CCWGG	2 cut(s)	138, 765
Bst4CI	ACNGT	3 cut(s)	518, 1008, 1025
Bst6I	CTCTTC	3 cut(s)	165, 371, 471
BstAFI	CTTAAG	1 cut(s)	818
BstBI	TTCGAA	2 cut(s)	168, 870
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	556, 1015, 1233
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	5 cut(s)	94, 235, 534, 781, 919
BstMAI	GTCTC	2 cut(s)	879, 889
BstMBI	GATC	5 cut(s)	91, 232, 531, 778, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNI	CCWGG	2 cut(s)	138, 765
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	136, 608, 763
BstV1I	GCAGC	4 cut(s)	329, 434, 550, 1038
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	3 cut(s)	91, 232, 778
BstYI	RGATCY	3 cut(s)	91, 232, 778
BsuRI	GGCC	3 cut(s)	5, 109, 181
BtgI	CCRYGG	1 cut(s)	104
BtrI	CACGTC	1 cut(s)	622
BtsCI	GGATG	3 cut(s)	556, 1015, 1233
BtsIMutI	CAGTG	6 cut(s)	321, 523, 669, 675, 684, 1021
CaiI	CAGNNNCTG	3 cut(s)	323, 674, 997
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	4 cut(s)	134, 179, 461, 658
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	2 cut(s)	1009, 1075
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	6 cut(s)	52, 105, 456, 579, 892, 1218
CviQI	GTAC	2 cut(s)	1009, 1075
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	5 cut(s)	93, 234, 533, 780, 918
DpnII	GATC	5 cut(s)	91, 232, 531, 778, 916
DraIII	CACNNNGTG	1 cut(s)	767
DriI	GACNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	3 cut(s)	165, 371, 471
Eam1105I	GACNNNNNGTC	1 cut(s)	664
EarI	CTCTTC	3 cut(s)	165, 371, 471
Eco130I	CCWWGG	3 cut(s)	104, 127, 203
Eco31I	GGTCTC	1 cut(s)	889
Eco32I	GATATC	1 cut(s)	731
Eco47I	GGWCC	3 cut(s)	134, 461, 658
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	136, 763
EcoRV	GATATC	1 cut(s)	731
EcoT14I	CCWWGG	3 cut(s)	104, 127, 203
EcoT22I	ATGCAT	1 cut(s)	1223
ErhI	CCWWGG	3 cut(s)	104, 127, 203
FaeI	CATG	6 cut(s)	55, 108, 459, 582, 895, 1221
FaqI	GGGAC	1 cut(s)	1076
FatI	CATG	6 cut(s)	51, 104, 455, 578, 891, 1217
FbaI	TGATCA	2 cut(s)	531, 916
Fnu4HI	GCNGC	4 cut(s)	318, 423, 539, 1052
FokI	GGATG	3 cut(s)	563, 1002, 1220
Fsp4HI	GCNGC	4 cut(s)	318, 423, 539, 1052
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	4 cut(s)	318, 423, 539, 1052
GsuI	CTGGAG	2 cut(s)	159, 356
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	5, 109, 181
HapII	CCGG	4 cut(s)	264, 609, 882, 1237
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	6 cut(s)	55, 108, 459, 582, 895, 1221
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	7 cut(s)	267, 379, 401, 427, 583, 647, 994
HpaII	CCGG	4 cut(s)	264, 609, 882, 1237
HphI	GGTGA	5 cut(s)	578, 687, 1046, 1060, 1162
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	25, 859, 1137
Hpy188III	TCNNGA	5 cut(s)	147, 373, 651, 782, 892
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	623
HpyCH4III	ACNGT	3 cut(s)	518, 1008, 1025
HpyCH4IV	ACGT	3 cut(s)	215, 477, 621
HpyCH4V	TGCA	7 cut(s)	223, 422, 569, 853, 1004, 1112, 1221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	3 cut(s)	215, 477, 621
Hsp92II	CATG	6 cut(s)	55, 108, 459, 582, 895, 1221
HspAI	GCGC	1 cut(s)	606
Ksp22I	TGATCA	2 cut(s)	531, 916
Kzo9I	GATC	5 cut(s)	91, 232, 531, 778, 916
LmnI	GCTCC	2 cut(s)	129, 140
Lsp1109I	GCAGC	4 cut(s)	329, 434, 550, 1038
LweI	GCATC	1 cut(s)	556
MabI	ACCWGGT	1 cut(s)	763
MaeII	ACGT	3 cut(s)	215, 477, 621
MaeIII	GTNAC	5 cut(s)	584, 614, 676, 838, 943
MalI	GATC	5 cut(s)	93, 234, 533, 780, 918
MboI	GATC	5 cut(s)	91, 232, 531, 778, 916
MboII	GAAGA	5 cut(s)	182, 388, 458, 575, 744
MflI	RGATCY	3 cut(s)	91, 232, 778
MlsI	TGGCCA	1 cut(s)	109
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	5 cut(s)	388, 410, 421, 592, 988
MmeI	TCCRAC	2 cut(s)	238, 882
Mox20I	TGGCCA	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	1223
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	5 cut(s)	546, 807, 819, 1140, 1155
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	529
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	4 cut(s)	264, 609, 882, 1237
MspR9I	CCNGG	3 cut(s)	138, 610, 765
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	2 cut(s)	138, 765
MwoI	GCNNNNNNNGC	1 cut(s)	535
NciI	CCSGG	1 cut(s)	610
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	5 cut(s)	91, 232, 531, 778, 916
NlaIII	CATG	6 cut(s)	55, 108, 459, 582, 895, 1221
NlaIV	GGNNCC	5 cut(s)	93, 125, 262, 462, 660
NmuCI	GTSAC	4 cut(s)	584, 676, 838, 943
NsiI	ATGCAT	1 cut(s)	1223
NspI	RCATGY	1 cut(s)	55
NspV	TTCGAA	2 cut(s)	168, 870
PagI	TCATGA	1 cut(s)	891
PciI	ACATGT	1 cut(s)	51
PctI	GAATGC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	267, 647
PkrI	GCNGC	4 cut(s)	319, 424, 540, 1053
PleI	GAGTC	5 cut(s)	387, 409, 421, 591, 988
PpsI	GAGTC	5 cut(s)	387, 409, 421, 591, 988
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	1140
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	136, 763
PspGI	CCWGG	2 cut(s)	136, 763
PspN4I	GGNNCC	5 cut(s)	93, 125, 262, 462, 660
PspPI	GGNCC	4 cut(s)	134, 179, 461, 658
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	3 cut(s)	323, 674, 997
PsuI	RGATCY	3 cut(s)	91, 232, 778
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	1010, 1076
RsaNI	GTAC	2 cut(s)	1009, 1075
SaqAI	TTAA	5 cut(s)	546, 807, 819, 1140, 1155
SatI	GCNGC	4 cut(s)	318, 423, 539, 1052
Sau3AI	GATC	5 cut(s)	91, 232, 531, 778, 916
Sau96I	GGNCC	4 cut(s)	134, 179, 461, 658
SchI	GAGTC	5 cut(s)	388, 410, 421, 592, 988
ScrFI	CCNGG	3 cut(s)	138, 610, 765
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	1 cut(s)	556
SfuI	TTCGAA	2 cut(s)	168, 870
SinI	GGWCC	3 cut(s)	134, 461, 658
SmlI	CTYRAG	3 cut(s)	590, 742, 818
SmoI	CTYRAG	3 cut(s)	590, 742, 818
SsiI	CCGC	1 cut(s)	967
StyD4I	CCNGG	3 cut(s)	136, 608, 763
StyI	CCWWGG	3 cut(s)	104, 127, 203
TaaI	ACNGT	3 cut(s)	518, 1008, 1025
TaiI	ACGT	3 cut(s)	218, 480, 624
TaqI	TCGA	3 cut(s)	168, 870, 1081
TfiI	GAWTC	2 cut(s)	267, 647
Tru1I	TTAA	5 cut(s)	546, 807, 819, 1140, 1155
Tru9I	TTAA	5 cut(s)	546, 807, 819, 1140, 1155
TscAI	CASTG	6 cut(s)	328, 523, 669, 675, 691, 1028
TseFI	GTSAC	4 cut(s)	584, 676, 838, 943
TseI	GCWGC	4 cut(s)	317, 422, 538, 1051
Tsp45I	GTSAC	4 cut(s)	584, 676, 838, 943
TspDTI	ATGAA	7 cut(s)	379, 444, 567, 744, 880, 1079, 1083
TspRI	CASTG	6 cut(s)	328, 523, 669, 675, 691, 1028
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	3 cut(s)	134, 461, 658
VspI	ATTAAT	1 cut(s)	1140
XapI	RAATTY	6 cut(s)	15, 208, 416, 704, 736, 1253
XceI	RCATGY	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	2 cut(s)	117, 134
Zsp2I	ATGCAT	1 cut(s)	1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.