Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

48635144 .. 48638825

Gene Structure 3682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCGAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGGTAAATATTTGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGATGATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGACGTGTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

228

Amino Acids

25.28

Weight (kDa)

5.33

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 137	2.3e-36	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	35, 48
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	157, 365
AcuI	CTGAAG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	5 cut(s)	148, 162, 304, 407, 480
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	6 cut(s)	92, 298, 392, 424, 526, 654
AluI	AGCT	6 cut(s)	92, 298, 392, 424, 526, 654
Alw26I	GTCTC	2 cut(s)	658, 668
AlwI	GGATC	2 cut(s)	35, 48
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	56, 128
ApeKI	GCWGC	3 cut(s)	266, 371, 535
ApoI	RAATTY	2 cut(s)	157, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	3 cut(s)	83, 128, 458
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	575
AsuII	TTCGAA	2 cut(s)	117, 649
AvaII	GGWCC	2 cut(s)	83, 458
BalI	TGGCCA	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	278, 383, 547
BccI	CCATC	2 cut(s)	488, 542
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	658, 668
BfoI	RGCGCY	1 cut(s)	606
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	3 cut(s)	267, 372, 536
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	3 cut(s)	268, 373, 537
Bme1390I	CCNGG	2 cut(s)	87, 607
Bme18I	GGWCC	2 cut(s)	83, 458
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	83, 128, 458
BmiI	GGNNCC	4 cut(s)	42, 74, 211, 459
BmrFI	CCNGG	2 cut(s)	87, 607
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	2 cut(s)	108, 305
Bpu1102I	GCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	2 cut(s)	117, 649
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	607
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	53, 76, 152
BsaWI	WCCGGW	2 cut(s)	212, 660
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	53, 76, 152
BseGI	GGATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	278, 383, 547
BshFI	GGCC	2 cut(s)	58, 130
BsiSI	CCGG	3 cut(s)	213, 606, 661
BsmAI	GTCTC	2 cut(s)	658, 668
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	58, 130
Bso31I	GGTCTC	1 cut(s)	668
Bsp119I	TTCGAA	2 cut(s)	117, 649
Bsp143I	GATC	3 cut(s)	40, 181, 528
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	58, 130
BspCNI	CTCAG	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	42, 74, 211, 459
BspPI	GGATC	2 cut(s)	35, 48
BspT104I	TTCGAA	2 cut(s)	117, 649
BspTNI	GGTCTC	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	53, 76, 152
BssMI	GATC	3 cut(s)	40, 181, 528
BssT1I	CCWWGG	3 cut(s)	53, 76, 152
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	3 cut(s)	114, 320, 468
BstBI	TTCGAA	2 cut(s)	117, 649
BstDEI	CTNAG	2 cut(s)	425, 522
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	3 cut(s)	43, 184, 531
BstMAI	GTCTC	2 cut(s)	658, 668
BstMBI	GATC	3 cut(s)	40, 181, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 532
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	85, 605
BstV1I	GCAGC	3 cut(s)	278, 383, 547
BstX2I	RGATCY	2 cut(s)	40, 181
BstYI	RGATCY	2 cut(s)	40, 181
BsuRI	GGCC	2 cut(s)	58, 130
BtgI	CCRYGG	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	270, 520
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	3 cut(s)	83, 128, 458
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	4 cut(s)	54, 453, 576, 671
DdeI	CTNAG	2 cut(s)	425, 522
DpnI	GATC	3 cut(s)	42, 183, 530
DpnII	GATC	3 cut(s)	40, 181, 528
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	114, 320, 468
EarI	CTCTTC	3 cut(s)	114, 320, 468
Eco130I	CCWWGG	3 cut(s)	53, 76, 152
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	83, 458
Eco57I	CTGAAG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	3 cut(s)	53, 76, 152
ErhI	CCWWGG	3 cut(s)	53, 76, 152
FaeI	CATG	4 cut(s)	57, 456, 579, 674
FaiI	YATR	8 cut(s)	18, 55, 357, 395, 454, 577, 657, 672
FatI	CATG	4 cut(s)	53, 452, 575, 670
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	267, 372, 536
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	267, 372, 536
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	3 cut(s)	267, 372, 536
GsuI	CTGGAG	2 cut(s)	108, 305
HaeII	RGCGCY	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	58, 130
HapII	CCGG	3 cut(s)	213, 606, 661
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	4 cut(s)	57, 456, 579, 674
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	216, 328, 350, 376, 580
HpaII	CCGG	3 cut(s)	213, 606, 661
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	638
Hpy188III	TCNNGA	3 cut(s)	96, 322, 671
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	3 cut(s)	164, 474, 618
HpyCH4V	TGCA	4 cut(s)	172, 371, 566, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 532
HpyF3I	CTNAG	2 cut(s)	425, 522
HpySE526I	ACGT	3 cut(s)	164, 474, 618
Hsp92II	CATG	4 cut(s)	57, 456, 579, 674
HspAI	GCGC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	40, 181, 528
LmnI	GCTCC	2 cut(s)	78, 89
LpnPI	CCDG	9 cut(s)	55, 72, 81, 99, 216, 226, 335, 619, 674
Lsp1109I	GCAGC	3 cut(s)	278, 383, 547
LweI	GCATC	1 cut(s)	553
MaeII	ACGT	3 cut(s)	164, 474, 618
MaeIII	GTNAC	2 cut(s)	581, 611
MalI	GATC	3 cut(s)	42, 183, 530
MboI	GATC	3 cut(s)	40, 181, 528
MboII	GAAGA	5 cut(s)	131, 337, 419, 455, 572
MflI	RGATCY	2 cut(s)	40, 181
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	7 cut(s)	60, 142, 157, 365, 554, 571, 682
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	4 cut(s)	337, 359, 370, 589
MmeI	TCCRAC	2 cut(s)	187, 661
Mox20I	TGGCCA	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	1 cut(s)	543
Msp20I	TGGCCA	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	3 cut(s)	213, 606, 661
MspR9I	CCNGG	2 cut(s)	87, 607
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	398, 532
NciI	CCSGG	1 cut(s)	607
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	40, 181, 528
NlaIII	CATG	4 cut(s)	57, 456, 579, 674
NlaIV	GGNNCC	4 cut(s)	42, 74, 211, 459
NmuCI	GTSAC	1 cut(s)	581
NspV	TTCGAA	2 cut(s)	117, 649
PagI	TCATGA	1 cut(s)	670
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	268, 373, 537
PleI	GAGTC	4 cut(s)	336, 358, 370, 588
PpsI	GAGTC	4 cut(s)	336, 358, 370, 588
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	42, 74, 211, 459
PspPI	GGNCC	3 cut(s)	83, 128, 458
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	40, 181
PvuII	CAGCTG	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	3 cut(s)	267, 372, 536
Sau3AI	GATC	3 cut(s)	40, 181, 528
Sau96I	GGNCC	3 cut(s)	83, 128, 458
SchI	GAGTC	4 cut(s)	337, 359, 370, 589
ScrFI	CCNGG	2 cut(s)	87, 607
SfaNI	GCATC	1 cut(s)	553
SfuI	TTCGAA	2 cut(s)	117, 649
SinI	GGWCC	2 cut(s)	83, 458
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	7 cut(s)	60, 142, 157, 365, 554, 571, 682
SspI	AATATT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	85, 605
StyI	CCWWGG	3 cut(s)	53, 76, 152
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	3 cut(s)	167, 477, 621
TaqI	TCGA	3 cut(s)	47, 117, 649
TasI	AATT	7 cut(s)	60, 142, 157, 365, 554, 571, 682
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	2 cut(s)	277, 520
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	3 cut(s)	266, 371, 535
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	4 cut(s)	328, 441, 564, 659
TspRI	CASTG	2 cut(s)	277, 520
VpaK11BI	GGWCC	2 cut(s)	83, 458
XapI	RAATTY	2 cut(s)	157, 365
XcmI	CCANNNNNNNNNTGG	2 cut(s)	66, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.