Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

50181408 .. 50192996

Gene Structure 11589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG362400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCTCCATATCCACCAAAACCAAGGTGGTGCCTGCAGTCATAGTCGGCGCCGGAAGGGTTGGGAAGGCCTTAAATGACATGGGCAATGGTGATGACTTGCTGGTCAAAAGAGGAGAGCCTATGCCTCTTGACTTTGAAGGCCCATTAATGGTTTGTACTAGAAATGATGATGTCAAGGCAGTTCTTGAGTCTACTCCAAGGCCCAGATGGAACAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCGAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

233

Amino Acids

25.54

Weight (kDa)

7.78

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	73 - 212	1.1e-37	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AccB1I	GGYRCC	2 cut(s)	31, 50
AccI	GTMKAC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	260, 273
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	382, 590
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	6 cut(s)	140, 373, 387, 529, 632, 694
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	5 cut(s)	317, 523, 617, 649, 662
AluI	AGCT	5 cut(s)	317, 523, 617, 649, 662
AlwI	GGATC	2 cut(s)	260, 273
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	6 cut(s)	3, 69, 142, 203, 281, 353
ApeKI	GCWGC	2 cut(s)	491, 596
ApoI	RAATTY	2 cut(s)	382, 590
AseI	ATTAAT	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	5 cut(s)	143, 204, 308, 353, 672
AsuHPI	GGTGA	1 cut(s)	104
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	2 cut(s)	308, 672
BalI	TGGCCA	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	2 cut(s)	31, 50
BbvI	GCAGC	2 cut(s)	503, 608
BccI	CCATC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	312
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	2 cut(s)	492, 597
BlsI	GCNGC	2 cut(s)	493, 598
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	2 cut(s)	308, 672
BmgT120I	GGNCC	5 cut(s)	143, 204, 308, 353, 672
BmiI	GGNNCC	6 cut(s)	33, 52, 267, 299, 436, 673
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	2 cut(s)	333, 530
Bpu14I	TTCGAA	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	5 cut(s)	24, 200, 278, 301, 377
BsaWI	WCCGGW	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	5 cut(s)	24, 200, 278, 301, 377
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	503, 608
BshFI	GGCC	6 cut(s)	5, 71, 144, 205, 283, 355
BshNI	GGYRCC	2 cut(s)	31, 50
BsiSI	CCGG	2 cut(s)	54, 438
BslI	CCNNNNNNNGG	1 cut(s)	151
BsnI	GGCC	6 cut(s)	5, 71, 144, 205, 283, 355
Bsp119I	TTCGAA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	265, 406
Bsp19I	CCATGG	1 cut(s)	278
BspANI	GGCC	6 cut(s)	5, 71, 144, 205, 283, 355
BspLI	GGNNCC	6 cut(s)	33, 52, 267, 299, 436, 673
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	260, 273
BspT104I	TTCGAA	1 cut(s)	342
BspT107I	GGYRCC	2 cut(s)	31, 50
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	5 cut(s)	24, 200, 278, 301, 377
BssMI	GATC	2 cut(s)	265, 406
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	5 cut(s)	24, 200, 278, 301, 377
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	3 cut(s)	339, 545, 682
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	650
BstDSI	CCRYGG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	268, 409
BstMBI	GATC	2 cut(s)	265, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	503, 608
BstX2I	RGATCY	2 cut(s)	265, 406
BstYI	RGATCY	2 cut(s)	265, 406
BsuRI	GGCC	6 cut(s)	5, 71, 144, 205, 283, 355
BtgI	CCRYGG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	5 cut(s)	143, 204, 308, 353, 672
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	4 cut(s)	82, 226, 279, 667
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	650
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	2 cut(s)	267, 408
DpnII	GATC	2 cut(s)	265, 406
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	3 cut(s)	339, 545, 682
EarI	CTCTTC	3 cut(s)	339, 545, 682
Eco130I	CCWWGG	5 cut(s)	24, 200, 278, 301, 377
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	308, 672
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	5 cut(s)	24, 200, 278, 301, 377
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	5 cut(s)	24, 200, 278, 301, 377
FaeI	CATG	4 cut(s)	85, 229, 282, 670
FatI	CATG	4 cut(s)	81, 225, 278, 666
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	492, 597
Fsp4HI	GCNGC	2 cut(s)	492, 597
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	492, 597
GsuI	CTGGAG	2 cut(s)	333, 530
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	6 cut(s)	5, 71, 144, 205, 283, 355
HapII	CCGG	2 cut(s)	54, 438
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	85, 229, 282, 670
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	191, 441, 553, 575, 601
HpaII	CCGG	2 cut(s)	54, 438
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	195, 308
Hpy188III	TCNNGA	4 cut(s)	131, 188, 321, 547
Hpy8I	GTNNAC	2 cut(s)	195, 308
HpyAV	CCTTC	4 cut(s)	51, 61, 134, 629
HpyCH4IV	ACGT	2 cut(s)	389, 688
HpyCH4V	TGCA	3 cut(s)	38, 397, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	1 cut(s)	650
HpySE526I	ACGT	2 cut(s)	389, 688
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	85, 229, 282, 670
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	265, 406
LmnI	GCTCC	3 cut(s)	303, 314, 659
Lsp1109I	GCAGC	2 cut(s)	503, 608
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	389, 688
MalI	GATC	2 cut(s)	267, 408
MboI	GATC	2 cut(s)	265, 406
MboII	GAAGA	4 cut(s)	356, 562, 644, 669
MflI	RGATCY	2 cut(s)	265, 406
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	4 cut(s)	285, 367, 382, 590
MluNI	TGGCCA	1 cut(s)	283
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	4 cut(s)	200, 562, 584, 595
MmeI	TCCRAC	1 cut(s)	412
Mox20I	TGGCCA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	2 cut(s)	74, 149
Msp20I	TGGCCA	1 cut(s)	283
MspI	CCGG	2 cut(s)	54, 438
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	623
NarI	GGCGCC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	265, 406
NlaIII	CATG	4 cut(s)	85, 229, 282, 670
NlaIV	GGNNCC	6 cut(s)	33, 52, 267, 299, 436, 673
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	71
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	493, 598
PleI	GAGTC	4 cut(s)	199, 561, 583, 595
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	4 cut(s)	199, 561, 583, 595
PpuMI	RGGWCCY	1 cut(s)	672
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	6 cut(s)	33, 52, 267, 299, 436, 673
PspPI	GGNCC	5 cut(s)	143, 204, 308, 353, 672
PspPPI	RGGWCCY	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	265, 406
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	74, 149
SatI	GCNGC	2 cut(s)	492, 597
Sau3AI	GATC	2 cut(s)	265, 406
Sau96I	GGNCC	5 cut(s)	143, 204, 308, 353, 672
SchI	GAGTC	4 cut(s)	200, 562, 584, 595
ScrFI	CCNGG	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	2 cut(s)	308, 672
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	285, 367, 382, 590
SseBI	AGGCCT	1 cut(s)	71
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	5 cut(s)	24, 200, 278, 301, 377
TaiI	ACGT	2 cut(s)	392, 691
TaqI	TCGA	2 cut(s)	272, 342
TasI	AATT	4 cut(s)	285, 367, 382, 590
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	74, 149
Tru9I	TTAA	2 cut(s)	74, 149
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	2 cut(s)	491, 596
TspDTI	ATGAA	2 cut(s)	553, 655
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	308, 672
VspI	ATTAAT	1 cut(s)	149
XapI	RAATTY	2 cut(s)	382, 590
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	4 cut(s)	25, 207, 291, 308
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.