Rroxscaffold_1G00023960

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
29659997 .. 29668218
8222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023960.1

Sequence Viewer

Length: 1050 bp
ATGGAAAAGCTCTATATACTTGTTCTTGTCTCTGTTCTCCTTTTGGTGCCAACAGCAACTGCTGCAGCAACCCAAGATGGATCAGAGGACTGGGGCTATGTTGAAGTCAGACCCAAAGCCCACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCAAAGCCATGGCCAACCATTCTCTGGCTCCAAGGTGGACCGGGAGCTTCAGGAGTTGGGATGGGGAACTTTCAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGGACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACATTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGGGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTCTAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGGTGTCTCATTGGGAGACAGTTGGATCTCCCCGGAAGATTTTGTGCTTTCATGGGGTCCTCTTCTTAAAGACGTTTCAAGGATTGATGACAATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCGGCAGATTAAGGATGGGAAATTAGGAGATGCAACTAATTCATGGATGCTACTTGAGAGCCTCATCAGATCCGGGAGTAACGACGTGGATTTCTATAATTTCCTATTGGATTCAGGAATGGACCCATTGTCTTCTGTGACAACCACTGAAATGAATGTTGCACTGAAAAAATATACAAGATATCTAAATGCCTTGAGGAGGCCTTCATTAGCACCAGGTGGTAATGGAGATATTGACACTTTGATGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGATCGACAATGTCTTTGAAGCTATGATCGGAGACTTCATGAGACCCGAGAATTGA

Protein Analysis

349

Amino Acids

38.55

Weight (kDa)

5.03

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 26 - 344 1.2e-47 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 192
AciI CCGC 1 cut(s) 691
AclWI GGATC 5 cut(s) 88, 158, 171, 590, 753
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 2 cut(s) 280, 488
AcuI CTGAAG 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 908
AfiI CCNNNNNNNGG 2 cut(s) 192, 888
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 8 cut(s) 104, 242, 271, 285, 427, 530, 636, 1013
AhdI GACNNNNNGTC 1 cut(s) 817
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 1 cut(s) 904
AluBI AGCT 8 cut(s) 10, 215, 421, 515, 547, 682, 958, 1016
AluI AGCT 8 cut(s) 10, 215, 421, 515, 547, 682, 958, 1016
Alw26I GTCTC 5 cut(s) 34, 567, 568, 1020, 1030
AlwI GGATC 5 cut(s) 88, 158, 171, 590, 753
AlwNI CAGNNNCTG 2 cut(s) 59, 395
Ama87I CYCGRG 1 cut(s) 1040
AoxI GGCC 3 cut(s) 179, 251, 890
ApeKI GCWGC 4 cut(s) 62, 65, 389, 494
ApoI RAATTY 2 cut(s) 280, 488
ArsI GACNNNNNNTTYG 2 cut(s) 992, 1024
AspS9I GGNCC 5 cut(s) 206, 251, 333, 614, 811
AsuC2I CCSGG 3 cut(s) 210, 590, 763
AvaI CYCGRG 1 cut(s) 1040
AvaII GGWCC 4 cut(s) 206, 333, 614, 811
BalI TGGCCA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 813
BbvI GCAGC 4 cut(s) 49, 77, 401, 506
BccI CCATC 3 cut(s) 71, 223, 698
BciT130I CCWGG 1 cut(s) 906
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 3 cut(s) 210, 590, 763
BcoDI GTCTC 5 cut(s) 34, 567, 568, 1020, 1030
BfmI CTRYAG 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 959
BglII AGATCT 1 cut(s) 304
BisI GCNGC 5 cut(s) 63, 66, 390, 495, 692
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 5 cut(s) 64, 67, 391, 496, 693
Bme1390I CCNGG 4 cut(s) 210, 590, 763, 906
Bme18I GGWCC 4 cut(s) 206, 333, 614, 811
BmeRI GACNNNNNGTC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 1040
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 5 cut(s) 206, 251, 333, 614, 811
BmiI GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
BmrFI CCNGG 4 cut(s) 210, 590, 763, 906
BmrI ACTGGG 2 cut(s) 100, 320
BmsI GCATC 2 cut(s) 709, 726
BmuI ACTGGG 2 cut(s) 100, 320
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 2 cut(s) 764, 904
BpuMI CCSGG 3 cut(s) 210, 590, 763
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 4 cut(s) 176, 199, 275, 588
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 888
Bse1I ACTGG 2 cut(s) 95, 326
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 4 cut(s) 176, 199, 275, 588
BseGI GGATG 3 cut(s) 234, 709, 741
BseLI CCNNNNNNNGG 2 cut(s) 192, 888
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 2 cut(s) 95, 326
BseRI GAGGAG 1 cut(s) 901
BseXI GCAGC 4 cut(s) 49, 77, 401, 506
BshFI GGCC 3 cut(s) 181, 253, 892
BshNI GGYRCC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 1040
BsiSI CCGG 4 cut(s) 209, 336, 590, 762
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 192, 888
BsmAI GTCTC 5 cut(s) 34, 567, 568, 1020, 1030
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 3 cut(s) 181, 253, 892
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 1 cut(s) 1040
Bsp143I GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 691
BspANI GGCC 3 cut(s) 181, 253, 892
BspCNI CTCAG 1 cut(s) 691
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 5 cut(s) 88, 158, 171, 590, 753
BspT107I GGYRCC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 1030
BsrI ACTGG 2 cut(s) 95, 326
BssECI CCNNGG 4 cut(s) 176, 199, 275, 588
BssMI GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
BssT1I CCWWGG 3 cut(s) 176, 199, 275
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 2 cut(s) 578, 671
Bst6I CTCTTC 2 cut(s) 443, 624
BstAFI CTTAAG 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 548, 678
BstDSI CCRYGG 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 3 cut(s) 234, 709, 741
BstKTI GATC 8 cut(s) 83, 166, 307, 585, 687, 761, 999, 1023
BstMAI GTCTC 5 cut(s) 34, 567, 568, 1020, 1030
BstMBI GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
BstMWI GCNNNNNNNGC 3 cut(s) 62, 521, 688
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 4 cut(s) 208, 588, 761, 904
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 4 cut(s) 49, 77, 401, 506
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 4 cut(s) 163, 304, 582, 758
BstYI RGATCY 4 cut(s) 163, 304, 582, 758
BsuRI GGCC 3 cut(s) 181, 253, 892
BtgI CCRYGG 1 cut(s) 176
BtrI CACGTC 1 cut(s) 775
BtsCI GGATG 3 cut(s) 234, 709, 741
BtsIMutI CAGTG 4 cut(s) 393, 676, 834, 851
CaiI CAGNNNCTG 2 cut(s) 59, 395
CciI TCATGA 1 cut(s) 1032
Cfr13I GGNCC 5 cut(s) 206, 251, 333, 614, 811
CsiI ACCWGGT 1 cut(s) 904
CspCI CAANNNNNGTGG 2 cut(s) 654, 689
CviAII CATG 5 cut(s) 124, 177, 609, 732, 1033
DdeI CTNAG 2 cut(s) 548, 678
DpnI GATC 8 cut(s) 82, 165, 306, 584, 686, 760, 998, 1022
DpnII GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
DraIII CACNNNGTG 1 cut(s) 908
DriI GACNNNNNGTC 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 443, 624
Eam1105I GACNNNNNGTC 1 cut(s) 817
EarI CTCTTC 2 cut(s) 443, 624
Eco130I CCWWGG 3 cut(s) 176, 199, 275
Eco147I AGGCCT 1 cut(s) 892
Eco31I GGTCTC 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 872
Eco47I GGWCC 4 cut(s) 206, 333, 614, 811
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 1040
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoO109I RGGNCCY 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 904
EcoRV GATATC 1 cut(s) 872
EcoT14I CCWWGG 3 cut(s) 176, 199, 275
ErhI CCWWGG 3 cut(s) 176, 199, 275
FaeI CATG 5 cut(s) 127, 180, 612, 735, 1036
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 123, 176, 608, 731, 1032
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 5 cut(s) 63, 66, 390, 495, 692
FokI GGATG 3 cut(s) 241, 716, 748
Fsp4HI GCNGC 5 cut(s) 63, 66, 390, 495, 692
GluI GCNGC 5 cut(s) 63, 66, 390, 495, 692
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 3 cut(s) 181, 253, 892
HapII CCGG 4 cut(s) 209, 336, 590, 762
Hin1II CATG 5 cut(s) 127, 180, 612, 735, 1036
HindIII AAGCTT 2 cut(s) 545, 956
HinfI GANTC 5 cut(s) 339, 451, 473, 499, 800
HpaII CCGG 4 cut(s) 209, 336, 590, 762
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 85, 110, 758, 1025
Hpy188III TCNNGA 5 cut(s) 219, 242, 445, 804, 1033
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 2 cut(s) 527, 903
HpyCH4III ACNGT 2 cut(s) 578, 671
HpyCH4IV ACGT 3 cut(s) 287, 630, 774
HpyCH4V TGCA 6 cut(s) 65, 295, 494, 722, 851, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 521, 688
HpyF3I CTNAG 2 cut(s) 548, 678
HpySE526I ACGT 3 cut(s) 287, 630, 774
Hsp92II CATG 5 cut(s) 127, 180, 612, 735, 1036
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
LmnI GCTCC 2 cut(s) 201, 212
Lsp1109I GCAGC 4 cut(s) 49, 77, 401, 506
LweI GCATC 2 cut(s) 709, 726
MabI ACCWGGT 1 cut(s) 904
MaeII ACGT 3 cut(s) 287, 630, 774
MaeIII GTNAC 3 cut(s) 767, 826, 979
MalI GATC 8 cut(s) 82, 165, 306, 584, 686, 760, 998, 1022
MboI GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
MboII GAAGA 5 cut(s) 460, 542, 605, 611, 813
MflI RGATCY 4 cut(s) 163, 304, 582, 758
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 7 cut(s) 265, 280, 488, 710, 727, 787, 1045
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 3 cut(s) 460, 482, 493
MmeI TCCRAC 1 cut(s) 560
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 4 cut(s) 624, 699, 948, 960
MslI CAYNNNNRTG 2 cut(s) 839, 932
Msp20I TGGCCA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 682
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 4 cut(s) 209, 336, 590, 762
MspR9I CCNGG 4 cut(s) 210, 590, 763, 906
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 1 cut(s) 906
MwoI GCNNNNNNNGC 3 cut(s) 62, 521, 688
NciI CCSGG 3 cut(s) 210, 590, 763
NcoI CCATGG 1 cut(s) 176
NdeII GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
NlaIII CATG 5 cut(s) 127, 180, 612, 735, 1036
NlaIV GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
NmuCI GTSAC 2 cut(s) 826, 979
NspI RCATGY 1 cut(s) 127
PagI TCATGA 1 cut(s) 1032
PceI AGGCCT 1 cut(s) 892
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 996
PfeI GAWTC 2 cut(s) 339, 800
PflFI GACNNNGTC 1 cut(s) 1004
PflMI CCANNNNNTGG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 761
PkrI GCNGC 5 cut(s) 64, 67, 391, 496, 693
PleI GAGTC 3 cut(s) 459, 481, 493
PpsI GAGTC 3 cut(s) 459, 481, 493
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
PspPI GGNCC 5 cut(s) 206, 251, 333, 614, 811
PspPPI RGGWCCY 1 cut(s) 614
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 2 cut(s) 59, 395
PsuI RGATCY 4 cut(s) 163, 304, 582, 758
PsyI GACNNNGTC 1 cut(s) 1004
PvuII CAGCTG 1 cut(s) 682
RseI CAYNNNNRTG 2 cut(s) 839, 932
SaqAI TTAA 4 cut(s) 624, 699, 948, 960
SatI GCNGC 5 cut(s) 63, 66, 390, 495, 692
Sau3AI GATC 8 cut(s) 80, 163, 304, 582, 684, 758, 996, 1020
Sau96I GGNCC 5 cut(s) 206, 251, 333, 614, 811
SchI GAGTC 3 cut(s) 460, 482, 493
ScrFI CCNGG 4 cut(s) 210, 590, 763, 906
SexAI ACCWGGT 1 cut(s) 904
SfaNI GCATC 2 cut(s) 709, 726
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 4 cut(s) 206, 333, 614, 811
SmiMI CAYNNNNRTG 2 cut(s) 839, 932
SmlI CTYRAG 3 cut(s) 743, 883, 959
SmoI CTYRAG 3 cut(s) 743, 883, 959
Sse9I AATT 7 cut(s) 265, 280, 488, 710, 727, 787, 1045
SseBI AGGCCT 1 cut(s) 892
SsiI CCGC 1 cut(s) 691
StuI AGGCCT 1 cut(s) 892
StyD4I CCNGG 4 cut(s) 208, 588, 761, 904
StyI CCWWGG 3 cut(s) 176, 199, 275
TaaI ACNGT 2 cut(s) 578, 671
TaiI ACGT 3 cut(s) 290, 633, 777
TaqI TCGA 1 cut(s) 999
TasI AATT 7 cut(s) 265, 280, 488, 710, 727, 787, 1045
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 2 cut(s) 339, 800
Tru1I TTAA 4 cut(s) 624, 699, 948, 960
Tru9I TTAA 4 cut(s) 624, 699, 948, 960
TscAI CASTG 4 cut(s) 400, 676, 841, 858
TseFI GTSAC 2 cut(s) 826, 979
TseI GCWGC 4 cut(s) 62, 65, 389, 494
Tsp45I GTSAC 2 cut(s) 826, 979
TspDTI ATGAA 7 cut(s) 451, 597, 720, 857, 885, 950, 1021
TspRI CASTG 4 cut(s) 400, 676, 841, 858
Tth111I GACNNNGTC 1 cut(s) 1004
Van91I CCANNNNNTGG 1 cut(s) 192
Vha464I CTTAAG 1 cut(s) 959
VpaK11BI GGWCC 4 cut(s) 206, 333, 614, 811
XagI CCTNNNNNAGG 1 cut(s) 886
XapI RAATTY 2 cut(s) 280, 488
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.