Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

11259388 .. 11260292

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAAAGCTTTCTGTAATACTTTCCGTCTCTCTTCTCCTTTTTGTACCACTTTTTCATGGAGGAACTGCAAGAACAGCGGCTGCTGCAGGAACCATAGATGGATCAGAGGAGTGGGGCTATGTTGAAGTCAGACCCAAAGCCCACATGTTCTGGTGGCTCTACAGAAGTCCCAACAGAGTTGAGGATCCCTCCAAGCCATGGCCAACCATTCTCTGGCTTCAGGGTGGACCTGGAGGTTCAGGAGTGGGGATGGGGAATTTTCAAGAGATTGGACCATTGGACACAAATTTGAACCCAAGAAACTCAACCTGGCTGCAAAAAGCAGATCTTTTATTTGTTGACAACCCTGTTGGGACTGGATACAGTTTTGTGGAAGACACATCTCTGTTTGTGAAAAATGATTTGGAGGCAGCTGCTGATTTGACAACATTGCTGGTGGAGCTTTTCAACAGAAATGAGAGCCTCCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCCTATGGAGGCAAATTTGCAGTCACTCTTGGACTTTCAGCTCTTAAAGCCATTCAACAAGGAAAGCTAAAACTTAGACTTGGAGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

197

Amino Acids

21.38

Weight (kDa)

5.71

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	201, 216
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	3 cut(s)	112, 182, 195
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	3 cut(s)	259, 289, 512
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	201, 216
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	5 cut(s)	128, 266, 295, 451, 554
AjnI	CCWGG	2 cut(s)	232, 311
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	10, 416, 445, 539, 565
AluI	AGCT	5 cut(s)	10, 416, 445, 539, 565
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	3 cut(s)	112, 182, 195
AlwNI	CAGNNNCTG	2 cut(s)	83, 419
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	5 cut(s)	83, 86, 316, 413, 416
ApoI	RAATTY	3 cut(s)	259, 289, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspS9I	GGNCC	2 cut(s)	230, 275
AvaII	GGWCC	2 cut(s)	230, 275
BalI	TGGCCA	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	5 cut(s)	70, 73, 303, 403, 425
BccI	CCATC	2 cut(s)	95, 247
BciT130I	CCWGG	2 cut(s)	234, 313
BciVI	GTATCC	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	2 cut(s)	87, 163
BfuI	GTATCC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	6 cut(s)	81, 84, 87, 317, 414, 417
BlsI	GCNGC	6 cut(s)	82, 85, 88, 318, 415, 418
Bme1390I	CCNGG	2 cut(s)	234, 313
Bme18I	GGWCC	2 cut(s)	230, 275
BmgT120I	GGNCC	2 cut(s)	230, 275
BmiI	GGNNCC	2 cut(s)	94, 189
BmrFI	CCNGG	2 cut(s)	234, 313
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 216
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	234, 313
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	201, 216
BseMI	GCAATG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	5 cut(s)	70, 73, 303, 403, 425
BshFI	GGCC	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	156, 370
BslI	CCNNNNNNNGG	2 cut(s)	201, 216
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	156, 370
BsnI	GGCC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	104, 187, 328
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	94, 189
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	3 cut(s)	112, 182, 195
BsrDI	GCAATG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	104, 187, 328
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	2 cut(s)	234, 313
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	3 cut(s)	107, 190, 331
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	104, 187, 328
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 86, 442, 545
BstNI	CCWGG	2 cut(s)	234, 313
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	232, 311
BstSFI	CTRYAG	2 cut(s)	87, 163
BstV1I	GCAGC	5 cut(s)	70, 73, 303, 403, 425
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	187, 328
BstYI	RGATCY	2 cut(s)	187, 328
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	258
CaiI	CAGNNNCTG	2 cut(s)	83, 419
Cfr13I	GGNCC	2 cut(s)	230, 275
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	3 cut(s)	59, 148, 201
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	572
DpnI	GATC	3 cut(s)	106, 189, 330
DpnII	GATC	3 cut(s)	104, 187, 328
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	230, 275
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	232, 311
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	62, 151, 204
FaiI	YATR	6 cut(s)	60, 98, 123, 149, 202, 504
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	2 cut(s)	156, 370
FatI	CATG	3 cut(s)	58, 147, 200
Fnu4HI	GCNGC	6 cut(s)	81, 84, 87, 317, 414, 417
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	6 cut(s)	81, 84, 87, 317, 414, 417
GluI	GCNGC	6 cut(s)	81, 84, 87, 317, 414, 417
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	62, 151, 204
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	475, 497
Hpy166II	GTNNAC	2 cut(s)	230, 343
Hpy188I	TCNGA	2 cut(s)	109, 134
Hpy188III	TCNNGA	2 cut(s)	243, 266
Hpy8I	GTNNAC	2 cut(s)	230, 343
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	71, 89, 319, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 86, 442, 545
HpyF3I	CTNAG	1 cut(s)	572
Hsp92II	CATG	3 cut(s)	62, 151, 204
Kzo9I	GATC	3 cut(s)	104, 187, 328
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	5 cut(s)	70, 73, 303, 403, 425
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	106, 189, 330
MboI	GATC	3 cut(s)	104, 187, 328
MboII	GAAGA	2 cut(s)	26, 389
MflI	RGATCY	2 cut(s)	187, 328
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	4 cut(s)	259, 289, 512, 586
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	2 cut(s)	484, 506
Mox20I	TGGCCA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	2 cut(s)	543, 589
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	2 cut(s)	80, 416
MspR9I	CCNGG	2 cut(s)	234, 313
MvaI	CCWGG	2 cut(s)	234, 313
MwoI	GCNNNNNNNGC	4 cut(s)	77, 86, 442, 545
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	104, 187, 328
NlaIII	CATG	3 cut(s)	62, 151, 204
NlaIV	GGNNCC	2 cut(s)	94, 189
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PflMI	CCANNNNNTGG	2 cut(s)	201, 216
PkrI	GCNGC	6 cut(s)	82, 85, 88, 318, 415, 418
PleI	GAGTC	2 cut(s)	483, 505
PpsI	GAGTC	2 cut(s)	483, 505
PscI	ACATGT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	232, 311
PspGI	CCWGG	2 cut(s)	232, 311
PspN4I	GGNNCC	2 cut(s)	94, 189
PspPI	GGNCC	2 cut(s)	230, 275
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	2 cut(s)	83, 419
PsuI	RGATCY	2 cut(s)	187, 328
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	543, 589
SatI	GCNGC	6 cut(s)	81, 84, 87, 317, 414, 417
Sau3AI	GATC	3 cut(s)	104, 187, 328
Sau96I	GGNCC	2 cut(s)	230, 275
SchI	GAGTC	2 cut(s)	484, 506
ScrFI	CCNGG	2 cut(s)	234, 313
SetI	ASST	9 cut(s)	12, 235, 241, 314, 418, 447, 541, 567, 586
SfcI	CTRYAG	2 cut(s)	87, 163
SinI	GGWCC	2 cut(s)	230, 275
Sse9I	AATT	4 cut(s)	259, 289, 512, 586
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	232, 311
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	368
TasI	AATT	4 cut(s)	259, 289, 512, 586
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	543, 589
Tru9I	TTAA	2 cut(s)	543, 589
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	5 cut(s)	83, 86, 316, 413, 416
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	47, 475
TspGWI	ACGGA	1 cut(s)	16
Van91I	CCANNNNNTGG	2 cut(s)	201, 216
VpaK11BI	GGWCC	2 cut(s)	230, 275
XapI	RAATTY	3 cut(s)	259, 289, 512
XceI	RCATGY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.