Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

56449303 .. 56450235

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTGGGATAGCTTCTGATCAACAAATCTCTCTTGTTTGGCCTTTTTCTTGCAGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCATTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAAAGAAGAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGATGGACCTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

174

Amino Acids

19.17

Weight (kDa)

9.23

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	81 - 153	6.8e-14	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	190, 203
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	352, 455, 517
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	5 cut(s)	14, 346, 440, 472, 485
AluI	AGCT	5 cut(s)	14, 346, 440, 472, 485
AlwI	GGATC	2 cut(s)	190, 203
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	41, 211
ApeKI	GCWGC	2 cut(s)	314, 419
ApoI	RAATTY	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	238, 495
AvaII	GGWCC	2 cut(s)	238, 495
BalI	TGGCCA	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BbvI	GCAGC	2 cut(s)	326, 431
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	19
BisI	GCNGC	2 cut(s)	315, 420
BlsI	GCNGC	2 cut(s)	316, 421
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	2 cut(s)	238, 495
BmgT120I	GGNCC	2 cut(s)	238, 495
BmiI	GGNNCC	4 cut(s)	197, 229, 259, 496
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	326, 431
BshFI	GGCC	2 cut(s)	43, 213
BsiSI	CCGG	1 cut(s)	261
BsnI	GGCC	2 cut(s)	43, 213
Bsp143I	GATC	2 cut(s)	19, 195
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	2 cut(s)	43, 213
BspLI	GGNNCC	4 cut(s)	197, 229, 259, 496
BspPI	GGATC	2 cut(s)	190, 203
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	19, 195
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	368, 505
BstDEI	CTNAG	2 cut(s)	126, 473
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	22, 198
BstMBI	GATC	2 cut(s)	19, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	326, 431
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	43, 213
BtgI	CCRYGG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	238, 495
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	156, 209, 490
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	126, 473
DpnI	GATC	2 cut(s)	21, 197
DpnII	GATC	2 cut(s)	19, 195
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	368, 505
EarI	CTCTTC	2 cut(s)	368, 505
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	238, 495
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	159, 212, 493
FaiI	YATR	7 cut(s)	67, 157, 173, 210, 405, 443, 491
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	3 cut(s)	155, 208, 489
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	315, 420
Fsp4HI	GCNGC	2 cut(s)	315, 420
GluI	GCNGC	2 cut(s)	315, 420
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	43, 213
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	3 cut(s)	159, 212, 493
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	264, 376, 398, 424
HpaII	CCGG	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	3 cut(s)	54, 87, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	2 cut(s)	126, 473
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	3 cut(s)	159, 212, 493
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 195
LmnI	GCTCC	2 cut(s)	233, 482
LpnPI	CCDG	9 cut(s)	40, 119, 147, 210, 227, 254, 264, 274, 383
Lsp1109I	GCAGC	2 cut(s)	326, 431
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	21, 197
MboI	GATC	2 cut(s)	19, 195
MboII	GAAGA	4 cut(s)	157, 385, 467, 492
MflI	RGATCY	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	2 cut(s)	215, 413
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	385, 407, 418
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	8 cut(s)	186, 210, 271, 304, 377, 390, 401, 508
Mox20I	TGGCCA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	64
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	19, 195
NlaIII	CATG	3 cut(s)	159, 212, 493
NlaIV	GGNNCC	4 cut(s)	197, 229, 259, 496
NspI	RCATGY	1 cut(s)	159
PciI	ACATGT	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	316, 421
PleI	GAGTC	3 cut(s)	384, 406, 418
PpsI	GAGTC	3 cut(s)	384, 406, 418
PpuMI	RGGWCCY	1 cut(s)	495
PscI	ACATGT	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	197, 229, 259, 496
PspPI	GGNCC	2 cut(s)	238, 495
PspPPI	RGGWCCY	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	315, 420
Sau3AI	GATC	2 cut(s)	19, 195
Sau96I	GGNCC	2 cut(s)	238, 495
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	3 cut(s)	385, 407, 418
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	7 cut(s)	16, 243, 348, 442, 474, 487, 514
SinI	GGWCC	2 cut(s)	238, 495
SmiMI	CAYNNNNRTG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	215, 413
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	514
TasI	AATT	2 cut(s)	215, 413
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	2 cut(s)	314, 419
TspDTI	ATGAA	2 cut(s)	376, 478
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	238, 495
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	2 cut(s)	221, 238
XmnI	GAANNNNTTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.