Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000317.1

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

90014 .. 94429

Gene Structure 4416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000317.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgttctggtggctttatagaagtcctaacagagttgaggatccctcaaagccatggccaattattctctggctccagggtggacctggagcttcaggagttgggattgggaactttgaagaggttgggccattggacaccaatttgaagccaaggaattcaacgtggttgcaaaaggcagatcttttatttgtggataacccagttggaaccggattcagttttgtggaggacaacgctctgtttgtgaaaaatgatgtggaggcagccactgatttgacaacactactgaaagagctattcaacagaaatgagagcctccagaagagtcctctgttcattgtggcagagtcttatggaggcaaatttgcagcgactcttggactttcagctataaaagccattgaagaaggaacactaaagcttagacttggaggtgttgcattgggagacagttggatctccccggaagattttgtgctttcatggggtcctcttctcaaagacgtttcaaggattgatgatgatggcttggagaaatcaaacagtgtggctcagctgatcaagcagcagattaaggaggggaaattagaagatgcaactaattcatggagtcaccttgagaacctcattagcgccgggagtaacgacgtggatttctataatttcctattggattcaggaatggacccactgtcagtatctgtgacaaccactgaaatatcaccaaaaaaatttacatttacaagatatacaagatatctaaattccttgaggcagtcttcattagcaccaggtggtaatggagatcttgacacattgttgaatggtgtcattaaaaggaagcttaagattatcccaaacaatgtgacttggggaatgcagtccgacaatgtgttcgaagctatgaccggagacttcatgagacccagaattgatgaggttgatcaactccttgccaaaggggtcaatgtcacaatatacaatgggcaagttgatcttatatgcgcaactaaggggacagaagcatggattgaaaagctcaagtgggatggactccaacaatttctgaacaagagtagaacccctctctactgtggaagtgatagaagtacgagaggattcactaggtcgtacaaaaaccttcacttctattggattctcggagcaggacactttgtacctgtggatcagccctgcattgctttgaatatggtggctgatattacacagtcacctgctgctgcttctgctccacatagaagcacaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

424

Amino Acids

46.98

Weight (kDa)

5.45

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1246
Acc16I	TGCGCA	1 cut(s)	1009
Acc36I	ACCTGC	1 cut(s)	1246
AclWI	GGATC	4 cut(s)	35, 48, 467, 1197
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	4 cut(s)	157, 365, 734, 766
AcuI	CTGAAG	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	797
AfaI	GTAC	3 cut(s)	1114, 1136, 1182
AflII	CTTAAG	1 cut(s)	848
AgsI	TTSAA	9 cut(s)	119, 148, 162, 304, 407, 513, 826, 1037, 1210
AhdI	GACNNNNNGTC	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	652
AjnI	CCWGG	3 cut(s)	75, 85, 793
AluBI	AGCT	8 cut(s)	92, 298, 392, 424, 559, 847, 905, 1042
AluI	AGCT	8 cut(s)	92, 298, 392, 424, 559, 847, 905, 1042
Alw26I	GTCTC	3 cut(s)	444, 909, 919
AlwI	GGATC	4 cut(s)	35, 48, 467, 1197
AlwNI	CAGNNNCTG	2 cut(s)	272, 704
AoxI	GGCC	2 cut(s)	56, 128
ApeKI	GCWGC	5 cut(s)	266, 371, 568, 1241, 1244
ApoI	RAATTY	4 cut(s)	157, 365, 734, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	881, 913
AspLEI	GCGC	2 cut(s)	638, 1010
AspS9I	GGNCC	4 cut(s)	83, 128, 491, 688
AsuC2I	CCSGG	2 cut(s)	467, 640
AsuHPI	GGTGA	3 cut(s)	608, 717, 1227
AsuII	TTCGAA	1 cut(s)	900
AvaII	GGWCC	3 cut(s)	83, 491, 688
BalI	TGGCCA	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	774
BbvI	GCAGC	5 cut(s)	278, 383, 580, 1228, 1231
BccI	CCATC	2 cut(s)	521, 1046
BciT130I	CCWGG	3 cut(s)	77, 87, 795
BclI	TGATCA	2 cut(s)	561, 946
BcnI	CCSGG	2 cut(s)	467, 640
BcoDI	GTCTC	3 cut(s)	444, 909, 919
BfaI	CTAG	1 cut(s)	1128
BfoI	RGCGCY	1 cut(s)	639
BfrI	CTTAAG	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	1246
BglII	AGATCT	2 cut(s)	181, 808
BisI	GCNGC	5 cut(s)	267, 372, 569, 1242, 1245
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	5 cut(s)	268, 373, 570, 1243, 1246
Bme1390I	CCNGG	5 cut(s)	77, 87, 467, 640, 795
Bme18I	GGWCC	3 cut(s)	83, 491, 688
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmgBI	CACGTC	1 cut(s)	652
BmgT120I	GGNCC	4 cut(s)	83, 128, 491, 688
BmiI	GGNNCC	5 cut(s)	42, 74, 211, 492, 690
BmrFI	CCNGG	5 cut(s)	77, 87, 467, 640, 795
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	774
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	3 cut(s)	59, 108, 305
Bpu1102I	GCTNAGC	1 cut(s)	555
Bpu14I	TTCGAA	1 cut(s)	900
BpuEI	CTTGAG	3 cut(s)	641, 793, 1028
BpuMI	CCSGG	2 cut(s)	467, 640
BsaI	GGTCTC	1 cut(s)	919
BsaJI	CCNNGG	4 cut(s)	53, 76, 152, 465
BsaWI	WCCGGW	2 cut(s)	212, 911
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	1200
BseBI	CCWGG	3 cut(s)	77, 87, 795
BseDI	CCNNGG	4 cut(s)	53, 76, 152, 465
BseGI	GGATG	1 cut(s)	1057
BseMI	GCAATG	1 cut(s)	1200
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	5 cut(s)	278, 383, 580, 1228, 1231
BshFI	GGCC	2 cut(s)	58, 130
BsiSI	CCGG	4 cut(s)	213, 467, 639, 912
BslFI	GGGAC	1 cut(s)	1033
BsmAI	GTCTC	3 cut(s)	444, 909, 919
BsmFI	GGGAC	1 cut(s)	1033
BsmI	GAATGC	1 cut(s)	885
BsnI	GGCC	2 cut(s)	58, 130
Bso31I	GGTCTC	1 cut(s)	919
Bsp119I	TTCGAA	1 cut(s)	900
Bsp143I	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	2 cut(s)	58, 130
BspCNI	CTCAG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	5 cut(s)	42, 74, 211, 492, 690
BspMI	ACCTGC	1 cut(s)	1246
BspPI	GGATC	4 cut(s)	35, 48, 467, 1197
BspT104I	TTCGAA	1 cut(s)	900
BspTI	CTTAAG	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	919
BsrDI	GCAATG	1 cut(s)	1200
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	53, 76, 152, 465
BssMI	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
BssT1I	CCWWGG	2 cut(s)	53, 152
Bst2UI	CCWGG	3 cut(s)	77, 87, 795
Bst4CI	ACNGT	5 cut(s)	455, 548, 696, 1097, 1233
Bst6I	CTCTTC	3 cut(s)	114, 320, 501
BstAFI	CTTAAG	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	900
BstDEI	CTNAG	3 cut(s)	425, 555, 1014
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	1057
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	2 cut(s)	638, 1010
BstKTI	GATC	8 cut(s)	43, 184, 462, 564, 811, 949, 1000, 1192
BstMAI	GTCTC	3 cut(s)	444, 909, 919
BstMBI	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 565, 1250
BstNI	CCWGG	3 cut(s)	77, 87, 795
BstSCI	CCNGG	5 cut(s)	75, 85, 465, 638, 793
BstV1I	GCAGC	5 cut(s)	278, 383, 580, 1228, 1231
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	4 cut(s)	40, 181, 459, 808
BstYI	RGATCY	4 cut(s)	40, 181, 459, 808
BsuRI	GGCC	2 cut(s)	58, 130
BtgI	CCRYGG	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	1 cut(s)	1057
BtsIMutI	CAGTG	4 cut(s)	270, 553, 692, 714
BveI	ACCTGC	1 cut(s)	1246
CaiI	CAGNNNCTG	2 cut(s)	272, 704
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	2 cut(s)	638, 1010
Cfr13I	GGNCC	4 cut(s)	83, 128, 491, 688
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	3 cut(s)	1113, 1135, 1181
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	5 cut(s)	54, 486, 609, 922, 1029
CviQI	GTAC	3 cut(s)	1113, 1135, 1181
DdeI	CTNAG	3 cut(s)	425, 555, 1014
DpnI	GATC	8 cut(s)	42, 183, 461, 563, 810, 948, 999, 1191
DpnII	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
DraIII	CACNNNGTG	1 cut(s)	797
DriI	GACNNNNNGTC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	114, 320, 501
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EarI	CTCTTC	3 cut(s)	114, 320, 501
Eco130I	CCWWGG	2 cut(s)	53, 152
Eco31I	GGTCTC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	761
Eco47I	GGWCC	3 cut(s)	83, 491, 688
Eco57I	CTGAAG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	75, 85, 793
EcoRV	GATATC	1 cut(s)	761
EcoT14I	CCWWGG	2 cut(s)	53, 152
ErhI	CCWWGG	2 cut(s)	53, 152
FaeI	CATG	5 cut(s)	57, 489, 612, 925, 1032
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	1 cut(s)	1033
FatI	CATG	5 cut(s)	53, 485, 608, 921, 1028
FbaI	TGATCA	2 cut(s)	561, 946
Fnu4HI	GCNGC	5 cut(s)	267, 372, 569, 1242, 1245
FokI	GGATG	1 cut(s)	1064
Fsp4HI	GCNGC	5 cut(s)	267, 372, 569, 1242, 1245
FspBI	CTAG	1 cut(s)	1128
FspI	TGCGCA	1 cut(s)	1009
GlaI	GCGC	2 cut(s)	637, 1009
GluI	GCNGC	5 cut(s)	267, 372, 569, 1242, 1245
GsuI	CTGGAG	3 cut(s)	59, 108, 305
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	58, 130
HapII	CCGG	4 cut(s)	213, 467, 639, 912
HhaI	GCGC	2 cut(s)	638, 1010
Hin1II	CATG	5 cut(s)	57, 489, 612, 925, 1032
Hin6I	GCGC	2 cut(s)	636, 1008
HinP1I	GCGC	2 cut(s)	636, 1008
HindIII	AAGCTT	2 cut(s)	422, 845
HinfI	GANTC	9 cut(s)	216, 328, 350, 376, 613, 677, 1056, 1122, 1159
HpaII	CCGG	4 cut(s)	213, 467, 639, 912
HphI	GGTGA	3 cut(s)	608, 717, 1227
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	889, 1071, 1166
Hpy188III	TCNNGA	5 cut(s)	96, 322, 681, 812, 922
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	653
HpyAV	CCTTC	2 cut(s)	404, 1154
HpyCH4III	ACNGT	5 cut(s)	455, 548, 696, 1097, 1233
HpyCH4IV	ACGT	3 cut(s)	164, 507, 651
HpyCH4V	TGCA	6 cut(s)	172, 371, 443, 599, 883, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 565, 1250
HpyF3I	CTNAG	3 cut(s)	425, 555, 1014
HpySE526I	ACGT	3 cut(s)	164, 507, 651
Hsp92II	CATG	5 cut(s)	57, 489, 612, 925, 1032
HspAI	GCGC	2 cut(s)	636, 1008
Ksp22I	TGATCA	2 cut(s)	561, 946
Kzo9I	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
LmnI	GCTCC	4 cut(s)	78, 89, 1166, 1258
Lsp1109I	GCAGC	5 cut(s)	278, 383, 580, 1228, 1231
LweI	GCATC	1 cut(s)	586
MabI	ACCWGGT	1 cut(s)	793
MaeI	CTAG	1 cut(s)	1128
MaeII	ACGT	3 cut(s)	164, 507, 651
MaeIII	GTNAC	6 cut(s)	614, 644, 706, 868, 973, 1233
MalI	GATC	8 cut(s)	42, 183, 461, 563, 810, 948, 999, 1191
MboI	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
MboII	GAAGA	7 cut(s)	131, 337, 419, 482, 488, 605, 774
MflI	RGATCY	4 cut(s)	40, 181, 459, 808
MlsI	TGGCCA	1 cut(s)	58
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	5 cut(s)	337, 359, 370, 622, 1050
MmeI	TCCRAC	4 cut(s)	187, 437, 912, 1084
Mox20I	TGGCCA	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	3 cut(s)	576, 837, 849
Msp20I	TGGCCA	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	559
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	4 cut(s)	213, 467, 639, 912
MspR9I	CCNGG	5 cut(s)	77, 87, 467, 640, 795
Mva1269I	GAATGC	1 cut(s)	885
MvaI	CCWGG	3 cut(s)	77, 87, 795
MwoI	GCNNNNNNNGC	3 cut(s)	398, 565, 1250
NciI	CCSGG	2 cut(s)	467, 640
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
NlaIII	CATG	5 cut(s)	57, 489, 612, 925, 1032
NlaIV	GGNNCC	5 cut(s)	42, 74, 211, 492, 690
NmuCI	GTSAC	5 cut(s)	614, 706, 868, 973, 1233
NsbI	TGCGCA	1 cut(s)	1009
NspV	TTCGAA	1 cut(s)	900
PagI	TCATGA	1 cut(s)	921
PaqCI	CACCTGC	1 cut(s)	1246
PctI	GAATGC	1 cut(s)	885
PfeI	GAWTC	4 cut(s)	216, 677, 1122, 1159
PkrI	GCNGC	5 cut(s)	268, 373, 570, 1243, 1246
PleI	GAGTC	5 cut(s)	336, 358, 370, 621, 1050
PpsI	GAGTC	5 cut(s)	336, 358, 370, 621, 1050
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	3 cut(s)	75, 85, 793
PspGI	CCWGG	3 cut(s)	75, 85, 793
PspN4I	GGNNCC	5 cut(s)	42, 74, 211, 492, 690
PspPI	GGNCC	4 cut(s)	83, 128, 491, 688
PspPPI	RGGWCCY	1 cut(s)	491
PstNI	CAGNNNCTG	2 cut(s)	272, 704
PsuI	RGATCY	4 cut(s)	40, 181, 459, 808
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	1114, 1136, 1182
RsaNI	GTAC	3 cut(s)	1113, 1135, 1181
SaqAI	TTAA	3 cut(s)	576, 837, 849
SatI	GCNGC	5 cut(s)	267, 372, 569, 1242, 1245
Sau3AI	GATC	8 cut(s)	40, 181, 459, 561, 808, 946, 997, 1189
Sau96I	GGNCC	4 cut(s)	83, 128, 491, 688
SchI	GAGTC	5 cut(s)	337, 359, 370, 622, 1050
ScrFI	CCNGG	5 cut(s)	77, 87, 467, 640, 795
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	900
SinI	GGWCC	3 cut(s)	83, 491, 688
SmlI	CTYRAG	4 cut(s)	620, 772, 848, 1043
SmoI	CTYRAG	4 cut(s)	620, 772, 848, 1043
SspMI	CTAG	1 cut(s)	1128
StyD4I	CCNGG	5 cut(s)	75, 85, 465, 638, 793
StyI	CCWWGG	2 cut(s)	53, 152
TaaI	ACNGT	5 cut(s)	455, 548, 696, 1097, 1233
TaiI	ACGT	3 cut(s)	167, 510, 654
TaqI	TCGA	1 cut(s)	900
TfiI	GAWTC	4 cut(s)	216, 677, 1122, 1159
Tru1I	TTAA	3 cut(s)	576, 837, 849
Tru9I	TTAA	3 cut(s)	576, 837, 849
TscAI	CASTG	4 cut(s)	277, 553, 699, 721
TseFI	GTSAC	5 cut(s)	614, 706, 868, 973, 1233
TseI	GCWGC	5 cut(s)	266, 371, 568, 1241, 1244
Tsp45I	GTSAC	5 cut(s)	614, 706, 868, 973, 1233
TspDTI	ATGAA	5 cut(s)	328, 474, 597, 774, 910
TspRI	CASTG	4 cut(s)	277, 553, 699, 721
Vha464I	CTTAAG	1 cut(s)	848
VpaK11BI	GGWCC	3 cut(s)	83, 491, 688
XapI	RAATTY	4 cut(s)	157, 365, 734, 766
XcmI	CCANNNNNNNNNTGG	2 cut(s)	66, 83
XspI	CTAG	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.