Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

26587712 .. 26591172

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG122800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTTGTTTCTGAAAAACAAGTTTATGACGATTGGGTTAAGAATGAGTCTACGGATTATATATGGTGGCAGGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGACATCTTTATGTAGAAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCCCTCGAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

210

Amino Acids

23.58

Weight (kDa)

5.34

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	49 - 189	6.5e-38	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	191, 204
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	313, 521
AcuI	CTGAAG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	304, 318, 460, 563, 625
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	5 cut(s)	248, 454, 548, 580, 593
AluI	AGCT	5 cut(s)	248, 454, 548, 580, 593
AlwI	GGATC	2 cut(s)	191, 204
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	212, 284
ApeKI	GCWGC	3 cut(s)	98, 422, 527
ApoI	RAATTY	2 cut(s)	313, 521
AspS9I	GGNCC	3 cut(s)	239, 284, 603
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	239, 603
BalI	TGGCCA	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	85, 434, 539
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	3 cut(s)	99, 423, 528
BlsI	GCNGC	3 cut(s)	100, 424, 529
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	239, 603
BmgT120I	GGNCC	3 cut(s)	239, 284, 603
BmiI	GGNNCC	4 cut(s)	198, 230, 367, 604
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	264, 461
Bpu14I	TTCGAA	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	209, 232, 308
BsaWI	WCCGGW	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	209, 232, 308
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	85, 434, 539
BshFI	GGCC	2 cut(s)	214, 286
BsiSI	CCGG	1 cut(s)	369
BsnI	GGCC	2 cut(s)	214, 286
Bsp119I	TTCGAA	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	196, 337
Bsp19I	CCATGG	1 cut(s)	209
BspANI	GGCC	2 cut(s)	214, 286
BspLI	GGNNCC	4 cut(s)	198, 230, 367, 604
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	191, 204
BspT104I	TTCGAA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	209, 232, 308
BssMI	GATC	2 cut(s)	196, 337
BssT1I	CCWWGG	3 cut(s)	209, 232, 308
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	3 cut(s)	270, 476, 613
BstBI	TTCGAA	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	209
BstKTI	GATC	2 cut(s)	199, 340
BstMBI	GATC	2 cut(s)	196, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	85, 434, 539
BstX2I	RGATCY	2 cut(s)	196, 337
BstYI	RGATCY	2 cut(s)	196, 337
BsuRI	GGCC	2 cut(s)	214, 286
BtgI	CCRYGG	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	239, 284, 603
CviAII	CATG	3 cut(s)	157, 210, 598
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	2 cut(s)	198, 339
DpnII	GATC	2 cut(s)	196, 337
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	3 cut(s)	270, 476, 613
EarI	CTCTTC	3 cut(s)	270, 476, 613
Eco130I	CCWWGG	3 cut(s)	209, 232, 308
Eco47I	GGWCC	2 cut(s)	239, 603
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	3 cut(s)	209, 232, 308
ErhI	CCWWGG	3 cut(s)	209, 232, 308
FaeI	CATG	3 cut(s)	160, 213, 601
FatI	CATG	3 cut(s)	156, 209, 597
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	99, 423, 528
Fsp4HI	GCNGC	3 cut(s)	99, 423, 528
GluI	GCNGC	3 cut(s)	99, 423, 528
GsuI	CTGGAG	2 cut(s)	264, 461
HaeIII	GGCC	2 cut(s)	214, 286
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	3 cut(s)	160, 213, 601
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	5 cut(s)	47, 372, 484, 506, 532
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	51, 239
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	252, 478
Hpy8I	GTNNAC	2 cut(s)	51, 239
HpyAV	CCTTC	1 cut(s)	560
HpyCH4IV	ACGT	2 cut(s)	320, 619
HpyCH4V	TGCA	3 cut(s)	101, 328, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	2 cut(s)	320, 619
Hsp92II	CATG	3 cut(s)	160, 213, 601
Kzo9I	GATC	2 cut(s)	196, 337
LmnI	GCTCC	3 cut(s)	234, 245, 590
Lsp1109I	GCAGC	3 cut(s)	85, 434, 539
MaeII	ACGT	2 cut(s)	320, 619
MalI	GATC	2 cut(s)	198, 339
MboI	GATC	2 cut(s)	196, 337
MboII	GAAGA	4 cut(s)	287, 493, 575, 600
MflI	RGATCY	2 cut(s)	196, 337
MlsI	TGGCCA	1 cut(s)	214
MluCI	AATT	4 cut(s)	216, 298, 313, 521
MluNI	TGGCCA	1 cut(s)	214
MlyI	GAGTC	4 cut(s)	56, 493, 515, 526
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	9 cut(s)	187, 211, 271, 379, 412, 485, 498, 509, 616
Mox20I	TGGCCA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	139
Msp20I	TGGCCA	1 cut(s)	214
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	196, 337
NlaIII	CATG	3 cut(s)	160, 213, 601
NlaIV	GGNNCC	4 cut(s)	198, 230, 367, 604
NspI	RCATGY	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	273
PciI	ACATGT	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	100, 424, 529
PleI	GAGTC	4 cut(s)	55, 492, 514, 526
PpsI	GAGTC	4 cut(s)	55, 492, 514, 526
PpuMI	RGGWCCY	1 cut(s)	603
PscI	ACATGT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	198, 230, 367, 604
PspPI	GGNCC	3 cut(s)	239, 284, 603
PspPPI	RGGWCCY	1 cut(s)	603
PstI	CTGCAG	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	2 cut(s)	196, 337
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	99, 423, 528
Sau3AI	GATC	2 cut(s)	196, 337
Sau96I	GGNCC	3 cut(s)	239, 284, 603
SchI	GAGTC	4 cut(s)	56, 493, 515, 526
ScrFI	CCNGG	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	2 cut(s)	239, 603
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse9I	AATT	4 cut(s)	216, 298, 313, 521
SspI	AATATT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	3 cut(s)	209, 232, 308
TaiI	ACGT	2 cut(s)	323, 622
TaqI	TCGA	2 cut(s)	203, 273
TasI	AATT	4 cut(s)	216, 298, 313, 521
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	3 cut(s)	98, 422, 527
TspDTI	ATGAA	2 cut(s)	484, 586
TspGWI	ACGGA	2 cut(s)	68, 145
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	239, 603
XapI	RAATTY	2 cut(s)	313, 521
XceI	RCATGY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	2 cut(s)	222, 239
XmiI	GTMKAC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.