Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

11260648 .. 11265628

Gene Structure 4981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTCTTTCTTGGGGTCCTCTGCTCAAAGACGTGTCAAGGCTTGACGACAATGGATTACAGGAATCAAATAATGTGGCTCAAAGAATTAAGCAACAGATTCGGGATGGTCAGTTAGTGGACGCAACCAATTCATGGAGGGAGCTTGAGCAAGTCATCATGTCTAGCAGCAATGCTGTGGATTTCTATAATTTTCTATTGGATTCAGGAATGGATCCAGTTTCATCCTTGGCATCAATTCGCTATAACCAAGGAATCGAAAAATATTCAATATACCTAAGTTCTTTAAGGTCTTCAGCAGGTGGCGGTAAAGGTCATCTTGGTTCTTTGTTAAATGGTGTCATTAAAAAGAAGCTTGAGATAATCCCAGATAATGTGACATGGGGAGGGCAGTCTCATAAGGTCTTCCCAGCCATGGCAGGCGAATTTATGAACCCAAGGATTAATGAGGTTGATGAACTCCTTGCTAAAGGGGTCAATGTCACAATATACAATGGGCAAGTTGATCTCATATGTGCAACCAAGGGGACTGAAGCATGGGTTGAAAAGCTCAAGTGGGAAGGACTCCCACATTTCTTGAACAAGAGTAGAACCCCTCTTTATTGTGGCCAAGAGGAAATTACAAGAGGGTTCACCAGGTCCTACAAAAACCTGCACTTTTATTGGATTCTTGGAGCAGGACATTTTGTACCTGTGGATCAGCCATGCATTGCATTGAATATGGTGGCCGACATCACGCAATCACCTGCTGCTGCTGCTTCTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

256

Amino Acids

28.2

Weight (kDa)

6.21

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	290, 754
Acc36I	ACCTGC	3 cut(s)	290, 660, 754
AccB7I	CCANNNNNTGG	1 cut(s)	135
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	3 cut(s)	209, 222, 705
AcoI	YGGCCR	2 cut(s)	607, 726
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	279, 552
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	2 cut(s)	135, 415
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	270, 545, 580, 718
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	635
AluBI	AGCT	3 cut(s)	145, 355, 550
AluI	AGCT	3 cut(s)	145, 355, 550
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	3 cut(s)	209, 222, 705
AoxI	GGCC	2 cut(s)	607, 726
ApeKI	GCWGC	4 cut(s)	168, 749, 752, 755
ApoI	RAATTY	1 cut(s)	425
AseI	ATTAAT	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	17, 639
AsuHPI	GGTGA	2 cut(s)	625, 735
AvaII	GGWCC	2 cut(s)	17, 639
BalI	TGGCCA	1 cut(s)	609
BamHI	GGATCC	1 cut(s)	214
BbsI	GAAGAC	2 cut(s)	285, 397
BbvI	GCAGC	4 cut(s)	180, 736, 739, 742
BccI	CCATC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	3 cut(s)	290, 660, 754
BisI	GCNGC	4 cut(s)	169, 750, 753, 756
BlsI	GCNGC	4 cut(s)	170, 751, 754, 757
Bme1390I	CCNGG	1 cut(s)	637
Bme18I	GGWCC	2 cut(s)	17, 639
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	17, 639
BmiI	GGNNCC	2 cut(s)	18, 216
BmrFI	CCNGG	1 cut(s)	637
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	285, 397
BpuEI	CTTGAG	3 cut(s)	167, 377, 536
BsaAI	YACGTR	1 cut(s)	765
BsaJI	CCNNGG	5 cut(s)	228, 250, 414, 437, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 415
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	2 cut(s)	178, 708
BseBI	CCWGG	1 cut(s)	637
BseDI	CCNNGG	5 cut(s)	228, 250, 414, 437, 522
BseGI	GGATG	2 cut(s)	112, 224
BseLI	CCNNNNNNNGG	2 cut(s)	135, 415
BseMI	GCAATG	2 cut(s)	178, 708
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	180, 736, 739, 742
BseYI	CCCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	2 cut(s)	609, 728
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	135, 415
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	609, 728
Bsp143I	GATC	3 cut(s)	214, 505, 697
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	609, 728
BspLI	GGNNCC	2 cut(s)	18, 216
BspMI	ACCTGC	3 cut(s)	290, 660, 754
BspPI	GGATC	3 cut(s)	209, 222, 705
BsrDI	GCAATG	2 cut(s)	178, 708
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	5 cut(s)	228, 250, 414, 437, 522
BssMI	GATC	3 cut(s)	214, 505, 697
BssT1I	CCWWGG	5 cut(s)	228, 250, 414, 437, 522
Bst2UI	CCWGG	1 cut(s)	637
BstBAI	YACGTR	1 cut(s)	765
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	112, 224
BstKTI	GATC	3 cut(s)	217, 508, 700
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	3 cut(s)	214, 505, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	635
BstSNI	TACGTA	1 cut(s)	765
BstV1I	GCAGC	4 cut(s)	180, 736, 739, 742
BstV2I	GAAGAC	2 cut(s)	285, 397
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	609, 728
BtgI	CCRYGG	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	112, 224
BveI	ACCTGC	3 cut(s)	290, 660, 754
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	17, 639
CseI	GACGC	1 cut(s)	131
CsiI	ACCWGGT	1 cut(s)	635
Csp6I	GTAC	1 cut(s)	689
CspCI	CAANNNNNGTGG	4 cut(s)	57, 92, 558, 593
CviAII	CATG	6 cut(s)	135, 160, 381, 415, 537, 705
CviJI	RGCY	9 cut(s)	43, 80, 145, 355, 413, 550, 609, 703, 728
CviKI_1	RGCY	9 cut(s)	43, 80, 145, 355, 413, 550, 609, 703, 728
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	3 cut(s)	216, 507, 699
DpnII	GATC	3 cut(s)	214, 505, 697
EaeI	YGGCCR	2 cut(s)	607, 726
Eco105I	TACGTA	1 cut(s)	765
Eco130I	CCWWGG	5 cut(s)	228, 250, 414, 437, 522
Eco47I	GGWCC	2 cut(s)	17, 639
Eco57I	CTGAAG	2 cut(s)	279, 552
EcoO109I	RGGNCCY	2 cut(s)	17, 639
EcoRII	CCWGG	1 cut(s)	635
EcoT14I	CCWWGG	5 cut(s)	228, 250, 414, 437, 522
EcoT22I	ATGCAT	1 cut(s)	710
ErhI	CCWWGG	5 cut(s)	228, 250, 414, 437, 522
FaeI	CATG	6 cut(s)	138, 163, 384, 418, 540, 708
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	6 cut(s)	134, 159, 380, 414, 536, 704
FauNDI	CATATG	1 cut(s)	512
Fnu4HI	GCNGC	4 cut(s)	169, 750, 753, 756
FokI	GGATG	2 cut(s)	119, 211
Fsp4HI	GCNGC	4 cut(s)	169, 750, 753, 756
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	169, 750, 753, 756
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	609, 728
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	6 cut(s)	138, 163, 384, 418, 540, 708
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	6 cut(s)	65, 100, 203, 255, 564, 667
HphI	GGTGA	2 cut(s)	625, 735
Hpy166II	GTNNAC	2 cut(s)	121, 633
Hpy188III	TCNNGA	3 cut(s)	104, 207, 577
Hpy8I	GTNNAC	2 cut(s)	121, 633
HpyAV	CCTTC	1 cut(s)	554
HpyCH4IV	ACGT	2 cut(s)	33, 764
HpyCH4V	TGCA	4 cut(s)	518, 655, 708, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	2 cut(s)	33, 764
Hsp92II	CATG	6 cut(s)	138, 163, 384, 418, 540, 708
Kzo9I	GATC	3 cut(s)	214, 505, 697
LmnI	GCTCC	2 cut(s)	142, 674
Lsp1109I	GCAGC	4 cut(s)	180, 736, 739, 742
LweI	GCATC	1 cut(s)	242
MabI	ACCWGGT	1 cut(s)	635
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	2 cut(s)	33, 764
MaeIII	GTNAC	2 cut(s)	376, 481
MalI	GATC	3 cut(s)	216, 507, 699
MboI	GATC	3 cut(s)	214, 505, 697
MboII	GAAGA	2 cut(s)	285, 397
MflI	RGATCY	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	609
MluCI	AATT	6 cut(s)	87, 130, 190, 237, 425, 618
MluNI	TGGCCA	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	558
MnlI	CCTC	7 cut(s)	30, 132, 380, 442, 606, 607, 620
Mox20I	TGGCCA	1 cut(s)	609
Mph1103I	ATGCAT	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	5 cut(s)	90, 287, 332, 345, 444
Msp20I	TGGCCA	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	637
MvaI	CCWGG	1 cut(s)	637
MwoI	GCNNNNNNNGC	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	414
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	3 cut(s)	214, 505, 697
NlaIII	CATG	6 cut(s)	138, 163, 384, 418, 540, 708
NlaIV	GGNNCC	2 cut(s)	18, 216
NmuCI	GTSAC	2 cut(s)	376, 481
NsiI	ATGCAT	1 cut(s)	710
PaqCI	CACCTGC	2 cut(s)	290, 754
PfeI	GAWTC	5 cut(s)	65, 100, 203, 255, 667
PflMI	CCANNNNNTGG	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	170, 751, 754, 757
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
Ppu21I	YACGTR	1 cut(s)	765
PpuMI	RGGWCCY	2 cut(s)	17, 639
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	2 cut(s)	17, 639
Psp6I	CCWGG	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	18, 216
PspPI	GGNCC	2 cut(s)	17, 639
PspPPI	RGGWCCY	2 cut(s)	17, 639
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	90, 287, 332, 345, 444
SatI	GCNGC	4 cut(s)	169, 750, 753, 756
Sau3AI	GATC	3 cut(s)	214, 505, 697
Sau96I	GGNCC	2 cut(s)	17, 639
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	637
SexAI	ACCWGGT	1 cut(s)	635
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	2 cut(s)	17, 639
SmlI	CTYRAG	3 cut(s)	146, 356, 551
SmoI	CTYRAG	3 cut(s)	146, 356, 551
SnaBI	TACGTA	1 cut(s)	765
Sse9I	AATT	6 cut(s)	87, 130, 190, 237, 425, 618
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	635
StyI	CCWWGG	5 cut(s)	228, 250, 414, 437, 522
TaiI	ACGT	2 cut(s)	36, 767
TaqI	TCGA	1 cut(s)	258
TasI	AATT	6 cut(s)	87, 130, 190, 237, 425, 618
TfiI	GAWTC	5 cut(s)	65, 100, 203, 255, 667
Tru1I	TTAA	5 cut(s)	90, 287, 332, 345, 444
Tru9I	TTAA	5 cut(s)	90, 287, 332, 345, 444
TseFI	GTSAC	2 cut(s)	376, 481
TseI	GCWGC	4 cut(s)	168, 749, 752, 755
Tsp45I	GTSAC	2 cut(s)	376, 481
TspDTI	ATGAA	4 cut(s)	123, 213, 446, 471
Van91I	CCANNNNNTGG	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	17, 639
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	1 cut(s)	425
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.