Rw0G012610

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00564
Physical Location & Seq
Forward (+)
15700 .. 20413
4714 bp
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UTR
Exon/CDS
Intron
Rw0G012610.1

Sequence Viewer

Length: 1389 bp
ATGGAAAAGCTCTATATACTTGTTCTTGTCTCTGTTCTCCTTTTGGTGCCAGCAGCAACTGCTGCAGCAACCCAAGATGGATCGGAGGACTGGGGCTATGTTGAAGTCAGACCCAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGGGGATCCCTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACCTGGAGGTTCAGGAGTTGGGATTGGGAACTTTGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGGGGCAAATTTGCAGTGACTCTTGGACTTTCCGCTCTAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGGTGTTGCACTGGGAGACAGTTGGATCTCCCCGGAAGATTTTGTGCTTTCATGGGGTCCTCTTCTTAAAGACGTTTCACGGATTGATGATAATAGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGGAGATGCAACTAATTCATGGATGCTACTTGAGAGCCTCATCAGATCCGGGAGTAACGATGTGGATTTCTATAATTTCCTATTGGATTCAGGAATGGACCCAGTGTCTTCTGTGACAACCACTGAAATGAATGTTGCACTGAAAAAATATACAAGATATCTAAATTCCTTGAGGAGGCCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACTTTGATGAATGGTGTCATTAAAAGGAAGCTTAAGATTATTCCAAACAATGTGACTTGGGGAATGCAGTCTGACAATGTCTTTGAAGCTATGATCGGAGACTTCATGAGACCCAGAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAACGTCACAGTATACAATGGTCAAGTTGATCTCATATGCGCAACCAAGGGGACTGAAGCATGGGTTGAAAAGCTCAAGTGGGATGGACTCCAACAATTTCTGAACAAGAGTAGAACCCCTCTCTACTGTGGGAATGATAGATTAACCGGAGGATTTACCAGGTCGTACAAAAACCTTCAATTCTATTGGATTCTTGGAGCAGGACACTTTGTACCTGTGGATCAGCCCTGCATTGCTTTGAATATGGTGGCTAATATTACACAGTCACCTGCTGCTGCTGCTTCTGCTTCTCCACATAGAAGAACATAA

Protein Analysis

462

Amino Acids

50.9

Weight (kDa)

5.64

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 26 - 447 2e-79 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1357
Acc16I TGCGCA 1 cut(s) 1120
Acc36I ACCTGC 1 cut(s) 1357
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 1092
AciI CCGC 1 cut(s) 513
AclWI GGATC 6 cut(s) 88, 158, 171, 590, 753, 1308
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 3 cut(s) 280, 488, 877
AcuI CTGAAG 1 cut(s) 1155
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 2 cut(s) 1247, 1293
AfiI CCNNNNNNNGG 1 cut(s) 888
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 123
AhdI GACNNNNNGTC 1 cut(s) 817
AjnI CCWGG 3 cut(s) 208, 904, 1238
AluBI AGCT 8 cut(s) 10, 421, 547, 654, 682, 958, 1016, 1153
AluI AGCT 8 cut(s) 10, 421, 547, 654, 682, 958, 1016, 1153
Alw26I GTCTC 4 cut(s) 34, 567, 1020, 1030
AlwI GGATC 6 cut(s) 88, 158, 171, 590, 753, 1308
AlwNI CAGNNNCTG 2 cut(s) 59, 395
AoxI GGCC 3 cut(s) 179, 251, 890
ApeKI GCWGC 8 cut(s) 53, 62, 65, 389, 691, 1352, 1355, 1358
ApoI RAATTY 3 cut(s) 280, 488, 877
ArsI GACNNNNNNTTYG 2 cut(s) 992, 1024
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 4 cut(s) 206, 251, 614, 811
AsuC2I CCSGG 2 cut(s) 590, 763
AsuHPI GGTGA 1 cut(s) 1338
AvaII GGWCC 3 cut(s) 206, 614, 811
BalI TGGCCA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 813
BbvI GCAGC 8 cut(s) 49, 65, 77, 401, 703, 1339, 1342, 1345
BccI CCATC 3 cut(s) 71, 698, 1157
BciT130I CCWGG 3 cut(s) 210, 906, 1240
BclI TGATCA 2 cut(s) 684, 1057
BcnI CCSGG 2 cut(s) 590, 763
BcoDI GTCTC 4 cut(s) 34, 567, 1020, 1030
BfmI CTRYAG 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 959
BfuAI ACCTGC 1 cut(s) 1357
BglII AGATCT 2 cut(s) 304, 919
BisI GCNGC 8 cut(s) 54, 63, 66, 390, 692, 1353, 1356, 1359
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 8 cut(s) 55, 64, 67, 391, 693, 1354, 1357, 1360
Bme1390I CCNGG 5 cut(s) 210, 590, 763, 906, 1240
Bme18I GGWCC 3 cut(s) 206, 614, 811
BmeRI GACNNNNNGTC 1 cut(s) 817
BmgT120I GGNCC 4 cut(s) 206, 251, 614, 811
BmiI GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
BmrFI CCNGG 5 cut(s) 210, 590, 763, 906, 1240
BmrI ACTGGG 4 cut(s) 100, 320, 578, 809
BmsI GCATC 2 cut(s) 709, 726
BmuI ACTGGG 4 cut(s) 100, 320, 578, 809
BpiI GAAGAC 1 cut(s) 813
BpmI CTGGAG 2 cut(s) 231, 428
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 3 cut(s) 764, 904, 1139
BpuMI CCSGG 2 cut(s) 590, 763
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 5 cut(s) 176, 199, 275, 588, 1125
BsaWI WCCGGW 2 cut(s) 335, 1226
Bsc4I CCNNNNNNNGG 1 cut(s) 888
Bse1I ACTGG 4 cut(s) 95, 326, 573, 815
Bse3DI GCAATG 1 cut(s) 1311
BseBI CCWGG 3 cut(s) 210, 906, 1240
BseDI CCNNGG 5 cut(s) 176, 199, 275, 588, 1125
BseGI GGATG 3 cut(s) 709, 741, 1168
BseLI CCNNNNNNNGG 1 cut(s) 888
BseMI GCAATG 1 cut(s) 1311
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 4 cut(s) 95, 326, 573, 815
BseRI GAGGAG 1 cut(s) 901
BseXI GCAGC 8 cut(s) 49, 65, 77, 401, 703, 1339, 1342, 1345
BshFI GGCC 3 cut(s) 181, 253, 892
BshNI GGYRCC 1 cut(s) 46
BsiSI CCGG 4 cut(s) 336, 590, 762, 1227
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 1 cut(s) 888
BsmAI GTCTC 4 cut(s) 34, 567, 1020, 1030
BsmFI GGGAC 1 cut(s) 1144
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 3 cut(s) 181, 253, 892
Bso31I GGTCTC 1 cut(s) 1030
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 513
BspANI GGCC 3 cut(s) 181, 253, 892
BspCNI CTCAG 1 cut(s) 691
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 1357
BspPI GGATC 6 cut(s) 88, 158, 171, 590, 753, 1308
BspT107I GGYRCC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 1030
BsrBI CCGCTC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 1311
BsrI ACTGG 4 cut(s) 95, 326, 573, 815
BssECI CCNNGG 5 cut(s) 176, 199, 275, 588, 1125
BssNAI GTATAC 1 cut(s) 1093
BssT1I CCWWGG 4 cut(s) 176, 199, 275, 1125
Bst1107I GTATAC 1 cut(s) 1093
Bst2UI CCWGG 3 cut(s) 210, 906, 1240
Bst4CI ACNGT 5 cut(s) 578, 671, 1090, 1208, 1344
Bst6I CTCTTC 3 cut(s) 237, 443, 624
BstAFI CTTAAG 1 cut(s) 959
BstAPI GCANNNNNTGC 2 cut(s) 59, 62
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 548, 678
BstDSI CCRYGG 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 3 cut(s) 709, 741, 1168
BstHHI GCGC 1 cut(s) 1121
BstMAI GTCTC 4 cut(s) 34, 567, 1020, 1030
BstMWI GCNNNNNNNGC 6 cut(s) 59, 62, 521, 688, 1358, 1364
BstNI CCWGG 3 cut(s) 210, 906, 1240
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 5 cut(s) 208, 588, 761, 904, 1238
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 8 cut(s) 49, 65, 77, 401, 703, 1339, 1342, 1345
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 5 cut(s) 163, 304, 582, 758, 919
BstYI RGATCY 5 cut(s) 163, 304, 582, 758, 919
BstZ17I GTATAC 1 cut(s) 1093
BsuRI GGCC 3 cut(s) 181, 253, 892
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 3 cut(s) 709, 741, 1168
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 7 cut(s) 393, 501, 566, 676, 822, 834, 851
BveI ACCTGC 1 cut(s) 1357
Cac8I GCNNGC 1 cut(s) 51
CaiI CAGNNNCTG 2 cut(s) 59, 395
CciI TCATGA 1 cut(s) 1032
CfoI GCGC 1 cut(s) 1121
Cfr13I GGNCC 4 cut(s) 206, 251, 614, 811
CsiI ACCWGGT 2 cut(s) 904, 1238
Csp6I GTAC 2 cut(s) 1246, 1292
CspCI CAANNNNNGTGG 2 cut(s) 654, 689
CviAII CATG 6 cut(s) 124, 177, 609, 732, 1033, 1140
CviQI GTAC 2 cut(s) 1246, 1292
DdeI CTNAG 2 cut(s) 548, 678
DraIII CACNNNGTG 1 cut(s) 908
DriI GACNNNNNGTC 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 179
Eam1104I CTCTTC 3 cut(s) 237, 443, 624
Eam1105I GACNNNNNGTC 1 cut(s) 817
EarI CTCTTC 3 cut(s) 237, 443, 624
Eco130I CCWWGG 4 cut(s) 176, 199, 275, 1125
Eco147I AGGCCT 1 cut(s) 892
Eco31I GGTCTC 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 872
Eco47I GGWCC 3 cut(s) 206, 614, 811
Eco57I CTGAAG 1 cut(s) 1155
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoO109I RGGNCCY 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 208, 904, 1238
EcoRV GATATC 1 cut(s) 872
EcoT14I CCWWGG 4 cut(s) 176, 199, 275, 1125
ErhI CCWWGG 4 cut(s) 176, 199, 275, 1125
FaeI CATG 6 cut(s) 127, 180, 612, 735, 1036, 1143
FaqI GGGAC 1 cut(s) 1144
FatI CATG 6 cut(s) 123, 176, 608, 731, 1032, 1139
FauNDI CATATG 1 cut(s) 1115
FbaI TGATCA 2 cut(s) 684, 1057
FblI GTMKAC 1 cut(s) 1092
Fnu4HI GCNGC 8 cut(s) 54, 63, 66, 390, 692, 1353, 1356, 1359
FokI GGATG 3 cut(s) 716, 748, 1175
Fsp4HI GCNGC 8 cut(s) 54, 63, 66, 390, 692, 1353, 1356, 1359
FspI TGCGCA 1 cut(s) 1120
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 8 cut(s) 54, 63, 66, 390, 692, 1353, 1356, 1359
GsuI CTGGAG 2 cut(s) 231, 428
HaeIII GGCC 3 cut(s) 181, 253, 892
HapII CCGG 4 cut(s) 336, 590, 762, 1227
HhaI GCGC 1 cut(s) 1121
Hin1II CATG 6 cut(s) 127, 180, 612, 735, 1036, 1143
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 2 cut(s) 545, 956
HinfI GANTC 7 cut(s) 339, 451, 473, 499, 800, 1167, 1270
HpaII CCGG 4 cut(s) 336, 590, 762, 1227
HphI GGTGA 1 cut(s) 1338
Hpy166II GTNNAC 3 cut(s) 206, 1081, 1093
Hpy188I TCNGA 6 cut(s) 85, 110, 758, 1000, 1025, 1182
Hpy188III TCNNGA 5 cut(s) 219, 445, 804, 923, 1033
Hpy8I GTNNAC 3 cut(s) 206, 1081, 1093
HpyAV CCTTC 3 cut(s) 527, 903, 1265
HpyCH4III ACNGT 5 cut(s) 578, 671, 1090, 1208, 1344
HpyCH4IV ACGT 3 cut(s) 287, 630, 1083
HpyCH4V TGCA 8 cut(s) 65, 295, 494, 566, 722, 851, 994, 1311
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 62, 521, 688, 1358, 1364
HpyF3I CTNAG 2 cut(s) 548, 678
HpySE526I ACGT 3 cut(s) 287, 630, 1083
Hsp92II CATG 6 cut(s) 127, 180, 612, 735, 1036, 1143
HspAI GCGC 1 cut(s) 1119
Ksp22I TGATCA 2 cut(s) 684, 1057
LmnI GCTCC 2 cut(s) 201, 1277
Lsp1109I GCAGC 8 cut(s) 49, 65, 77, 401, 703, 1339, 1342, 1345
LweI GCATC 2 cut(s) 709, 726
MabI ACCWGGT 2 cut(s) 904, 1238
MaeII ACGT 3 cut(s) 287, 630, 1083
MaeIII GTNAC 6 cut(s) 496, 767, 826, 979, 1084, 1344
MbiI CCGCTC 1 cut(s) 515
MboII GAAGA 6 cut(s) 254, 460, 542, 605, 611, 813
MflI RGATCY 5 cut(s) 163, 304, 582, 758, 919
MlsI TGGCCA 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 4 cut(s) 460, 482, 493, 1161
MmeI TCCRAC 3 cut(s) 310, 560, 1195
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 5 cut(s) 624, 699, 948, 960, 1223
MslI CAYNNNNRTG 2 cut(s) 839, 932
Msp20I TGGCCA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 682
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 4 cut(s) 336, 590, 762, 1227
MspR9I CCNGG 5 cut(s) 210, 590, 763, 906, 1240
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 3 cut(s) 210, 906, 1240
MwoI GCNNNNNNNGC 6 cut(s) 59, 62, 521, 688, 1358, 1364
NciI CCSGG 2 cut(s) 590, 763
NcoI CCATGG 1 cut(s) 176
NdeI CATATG 1 cut(s) 1115
NlaIII CATG 6 cut(s) 127, 180, 612, 735, 1036, 1143
NlaIV GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
NmuCI GTSAC 5 cut(s) 496, 826, 979, 1084, 1344
NsbI TGCGCA 1 cut(s) 1120
NspI RCATGY 1 cut(s) 127
PagI TCATGA 1 cut(s) 1032
PaqCI CACCTGC 1 cut(s) 1357
PceI AGGCCT 1 cut(s) 892
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 996
PfeI GAWTC 3 cut(s) 339, 800, 1270
PflFI GACNNNGTC 1 cut(s) 1004
PfoI TCCNGGA 1 cut(s) 761
PkrI GCNGC 8 cut(s) 55, 64, 67, 391, 693, 1354, 1357, 1360
PleI GAGTC 4 cut(s) 459, 481, 493, 1161
PpsI GAGTC 4 cut(s) 459, 481, 493, 1161
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 208, 904, 1238
PspGI CCWGG 3 cut(s) 208, 904, 1238
PspN4I GGNNCC 6 cut(s) 48, 165, 197, 334, 615, 813
PspPI GGNCC 4 cut(s) 206, 251, 614, 811
PspPPI RGGWCCY 1 cut(s) 614
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 2 cut(s) 59, 395
PsuI RGATCY 5 cut(s) 163, 304, 582, 758, 919
PsyI GACNNNGTC 1 cut(s) 1004
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 2 cut(s) 1247, 1293
RsaNI GTAC 2 cut(s) 1246, 1292
RseI CAYNNNNRTG 2 cut(s) 839, 932
SaqAI TTAA 5 cut(s) 624, 699, 948, 960, 1223
SatI GCNGC 8 cut(s) 54, 63, 66, 390, 692, 1353, 1356, 1359
Sau96I GGNCC 4 cut(s) 206, 251, 614, 811
SchI GAGTC 4 cut(s) 460, 482, 493, 1161
ScrFI CCNGG 5 cut(s) 210, 590, 763, 906, 1240
SexAI ACCWGGT 2 cut(s) 904, 1238
SfaNI GCATC 2 cut(s) 709, 726
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 3 cut(s) 206, 614, 811
SmiMI CAYNNNNRTG 2 cut(s) 839, 932
SmlI CTYRAG 4 cut(s) 743, 883, 959, 1154
SmoI CTYRAG 4 cut(s) 743, 883, 959, 1154
SseBI AGGCCT 1 cut(s) 892
SsiI CCGC 1 cut(s) 513
SspI AATATT 1 cut(s) 1336
StuI AGGCCT 1 cut(s) 892
StyD4I CCNGG 5 cut(s) 208, 588, 761, 904, 1238
StyI CCWWGG 4 cut(s) 176, 199, 275, 1125
TaaI ACNGT 5 cut(s) 578, 671, 1090, 1208, 1344
TaiI ACGT 3 cut(s) 290, 633, 1086
TfiI GAWTC 3 cut(s) 339, 800, 1270
Tru1I TTAA 5 cut(s) 624, 699, 948, 960, 1223
Tru9I TTAA 5 cut(s) 624, 699, 948, 960, 1223
TscAI CASTG 7 cut(s) 400, 501, 573, 676, 822, 841, 858
TseFI GTSAC 5 cut(s) 496, 826, 979, 1084, 1344
TseI GCWGC 8 cut(s) 53, 62, 65, 389, 691, 1352, 1355, 1358
Tsp45I GTSAC 5 cut(s) 496, 826, 979, 1084, 1344
TspDTI ATGAA 7 cut(s) 451, 597, 720, 857, 885, 950, 1021
TspGWI ACGGA 1 cut(s) 652
TspRI CASTG 7 cut(s) 400, 501, 573, 676, 822, 841, 858
Tth111I GACNNNGTC 1 cut(s) 1004
Vha464I CTTAAG 1 cut(s) 959
VpaK11BI GGWCC 3 cut(s) 206, 614, 811
XagI CCTNNNNNAGG 1 cut(s) 886
XapI RAATTY 3 cut(s) 280, 488, 877
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 2 cut(s) 189, 206
XmiI GTMKAC 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.