Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007698.1

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

35742 .. 37167

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007698.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgattattggagggattccggtgactggttgtcggattccggtcactggacgccgaactccggtcgtcggagaccgctgccggccactggataacccagttggaaccggattcagttttgtggaggacaacgctctgtttgtgaaaaatgatgtggaggcagccactgatttgacaacactactaaaagagctattcaacagaaatgagagcctccagaagagtcttctgttcattgtcgcagggccggcaaactcgcaaggccgaccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

90

Amino Acids

9.68

Weight (kDa)

7.8

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	52
AfiI	CCNNNNNNNGG	5 cut(s)	26, 47, 61, 68, 88
AgsI	TTSAA	1 cut(s)	199
AhdI	GACNNNNNGTC	1 cut(s)	30
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	83, 245, 262
ApeKI	GCWGC	2 cut(s)	78, 161
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	65, 173
BcoDI	GTCTC	1 cut(s)	66
BisI	GCNGC	2 cut(s)	79, 162
BlsI	GCNGC	2 cut(s)	80, 163
BmeRI	GACNNNNNGTC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	66
BsaWI	WCCGGW	4 cut(s)	19, 40, 61, 107
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 47, 61, 68, 88
Bse118I	RCCGGY	2 cut(s)	81, 247
Bse1I	ACTGG	4 cut(s)	31, 52, 93, 98
BseLI	CCNNNNNNNGG	5 cut(s)	26, 47, 61, 68, 88
BseNI	ACTGG	4 cut(s)	31, 52, 93, 98
BseXI	GCAGC	2 cut(s)	65, 173
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	85, 247, 264
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	6 cut(s)	20, 41, 62, 82, 108, 248
BslI	CCNNNNNNNGG	5 cut(s)	26, 47, 61, 68, 88
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	85, 247, 264
Bso31I	GGTCTC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	3 cut(s)	85, 247, 264
BspLI	GGNNCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	81, 247
BsrI	ACTGG	4 cut(s)	31, 52, 93, 98
BssAI	RCCGGY	2 cut(s)	81, 247
BssNI	GRCGYC	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	83, 249
BstMAI	GTCTC	1 cut(s)	66
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	65, 173
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	85, 247, 264
BtsIMutI	CAGTG	3 cut(s)	45, 86, 165
Cac8I	GCNNGC	2 cut(s)	83, 249
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	81, 247
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	60
CviJI	RGCY	6 cut(s)	85, 164, 193, 213, 247, 264
CviKI_1	RGCY	6 cut(s)	85, 164, 193, 213, 247, 264
DriI	GACNNNNNGTC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	215
Eam1105I	GACNNNNNGTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	79, 162
Fsp4HI	GCNGC	2 cut(s)	79, 162
GluI	GCNGC	2 cut(s)	79, 162
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	85, 247, 264
HapII	CCGG	6 cut(s)	20, 41, 62, 82, 108, 248
HgaI	GACGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	16, 37, 111, 223
HpaII	CCGG	6 cut(s)	20, 41, 62, 82, 108, 248
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	36, 71
Hpy188III	TCNNGA	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	52
KroI	GCCGGC	2 cut(s)	81, 247
KroNI	GCCGGC	2 cut(s)	83, 249
Lsp1109I	GCAGC	2 cut(s)	65, 173
MaeIII	GTNAC	2 cut(s)	22, 43
MboII	GAAGA	2 cut(s)	218, 232
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	3 cut(s)	14, 49, 82
MnlI	CCTC	4 cut(s)	5, 118, 151, 224
MroNI	GCCGGC	2 cut(s)	81, 247
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	6 cut(s)	20, 41, 62, 82, 108, 248
MwoI	GCNNNNNNNGC	1 cut(s)	248
NaeI	GCCGGC	2 cut(s)	83, 249
NgoMIV	GCCGGC	2 cut(s)	81, 247
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	22, 43
PdiI	GCCGGC	2 cut(s)	83, 249
PfeI	GAWTC	3 cut(s)	16, 37, 111
PkrI	GCNGC	2 cut(s)	80, 163
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	167
SatI	GCNGC	2 cut(s)	79, 162
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	232
SetI	ASST	1 cut(s)	195
SsiI	CCGC	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	16, 37, 111
TscAI	CASTG	3 cut(s)	52, 93, 172
TseFI	GTSAC	2 cut(s)	22, 43
TseI	GCWGC	2 cut(s)	78, 161
Tsp45I	GTSAC	2 cut(s)	22, 43
TspDTI	ATGAA	1 cut(s)	223
TspRI	CASTG	3 cut(s)	52, 93, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.