FvH4_3g30390

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
23620511 .. 23625420
4910 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30390.t3

Sequence Viewer

Length: 1422 bp
ATGTTCCTCTCTCTCCCAATGGAAAATCTCTCTGCACTTGTTCTTGTCTCTGTTCTCCTTTTGGTGCCACCAGCAATTGCTGCAAGAACCAAAGATGGATCAGAGGACTGGGGCTATGTTGAAGTCAGACCCAAAGCGCACATGTTTTGGTGGCTTTATAGAAGTCCTTACAGAGTTGAGGATCCCTCAAAGCCATGGCCGATCATTCTCTGGCTGCAAGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTTGAAGAGGTTGGGCCATTGGACACCTATTTGAAGCCAAGGAATTCAACATGGTTGCACAAAGCTGATCTCTTATTTGTGGATAACCCAGTCGGAACTGGATTCAGTTTTGTGGAGGACAACTCTCTGTTTGTGAAAACTGATGTGGAGGCAGCCACTGATTTGACAACATTACTGAAAGAGATATTCAACAAGAATGAGAGCCTCCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGTAAATTTGCAGCGACTCTTGGACTTTCAGCTCTAGAAGCCATAGAGCAAGGAAAACTAAAACTTAAACTTGGAGGTGTTGCATTGGGAGACAGTTGGATATCCCCGGAAGATTTTGTGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGATAATGGCTTGGAGAAAGCAAACAGTTTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATACATGGAGTGATCTTGAGAGCATCATCTCCTCCGCGAGTAACGACGTGGATTTTTATAATTTCCTATTAGATTCAGGAATGGACCCAGTGTCTGCTATAACAGCCAGTGAAATATCAGAACAAAATGTTGCACTTAAGAGATACACTAGATATCTAAATTCCCTAAGGCATTCCTCATTAGCACCAGGTGGTAATGGAGATCTTGACACTTTGATGAATGGTGCCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTAACTTGGGGCGGGCAGTCCGGTTATGTCTTCAACGTAATGGCCGGAGACTTCATGAGACCTAGAATCGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGACAAGTTGATCTTATATGCGCAACCAAGGGGACTGAATCATGGGTTGAAAAGCTCAAATGGGATGGACTCCAACAATTTCTGACCAAGAGTAGAACCCCTCTCTACTGTGGAAGTGATAGATTTACCAGAGGATTCACCAGGTCGCACAAAAACCTTCACTTCTATTGGATTCTTGGAGCAGGACACTTTGTACCTGTGGATCAGCCCTGCATTGCTTTGAATATGGTAGATGACATAACCCAGTCACCAGCTGCTGCTACTGTTTCTTCTGTTTCTCGACATAGAAAAATATAA

Protein Analysis

474

Amino Acids

52.25

Weight (kDa)

5.63

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 32 - 378 1.9e-56 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
Acc16I TGCGCA 1 cut(s) 1147
AccB1I GGYRCC 2 cut(s) 64, 968
AccII CGCG 1 cut(s) 782
AciI CCGC 2 cut(s) 780, 1017
AclWI GGATC 4 cut(s) 106, 176, 189, 1335
AcoI YGGCCR 2 cut(s) 197, 1047
AcsI RAATTY 3 cut(s) 298, 506, 904
AcuI CTGAAG 1 cut(s) 219
AdeI CACNNNGTG 1 cut(s) 935
AfaI GTAC 1 cut(s) 1320
AfiI CCNNNNNNNGG 1 cut(s) 978
AflII CTTAAG 2 cut(s) 881, 986
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 9 cut(s) 122, 260, 289, 303, 445, 654, 1039, 1175, 1348
AhdI GACNNNNNGTC 1 cut(s) 835
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 3 cut(s) 226, 931, 1265
AluBI AGCT 7 cut(s) 233, 320, 533, 700, 985, 1180, 1379
AluI AGCT 7 cut(s) 233, 320, 533, 700, 985, 1180, 1379
Alw26I GTCTC 4 cut(s) 52, 585, 1047, 1057
AlwI GGATC 4 cut(s) 106, 176, 189, 1335
AlwNI CAGNNNCTG 3 cut(s) 413, 839, 1382
AoxI GGCC 3 cut(s) 197, 269, 1047
ApeKI GCWGC 7 cut(s) 80, 214, 407, 512, 709, 1379, 1382
ApoI RAATTY 3 cut(s) 298, 506, 904
AspLEI GCGC 2 cut(s) 139, 1148
AspS9I GGNCC 4 cut(s) 224, 269, 632, 829
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 2 cut(s) 1255, 1365
AvaII GGWCC 3 cut(s) 224, 632, 829
AxyI CCTNAGG 1 cut(s) 911
BamHI GGATCC 1 cut(s) 181
BanI GGYRCC 2 cut(s) 64, 968
BbsI GAAGAC 1 cut(s) 1027
BbvI GCAGC 7 cut(s) 67, 201, 419, 524, 721, 1366, 1369
BccI CCATC 3 cut(s) 89, 716, 1184
BciT130I CCWGG 3 cut(s) 228, 933, 1267
BclI TGATCA 2 cut(s) 702, 1084
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 4 cut(s) 52, 585, 1047, 1057
BfaI CTAG 3 cut(s) 536, 894, 1068
BfrI CTTAAG 2 cut(s) 881, 986
BglII AGATCT 1 cut(s) 946
BisI GCNGC 7 cut(s) 81, 215, 408, 513, 710, 1380, 1383
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 7 cut(s) 82, 216, 409, 514, 711, 1381, 1384
Bme1390I CCNGG 4 cut(s) 228, 608, 933, 1267
Bme18I GGWCC 3 cut(s) 224, 632, 829
BmeRI GACNNNNNGTC 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 4 cut(s) 224, 269, 632, 829
BmiI GGNNCC 5 cut(s) 66, 183, 633, 831, 970
BmrFI CCNGG 4 cut(s) 228, 608, 933, 1267
BmrI ACTGGG 4 cut(s) 118, 338, 827, 1363
BmsI GCATC 2 cut(s) 727, 777
BmuI ACTGGG 4 cut(s) 118, 338, 827, 1363
BpiI GAAGAC 1 cut(s) 1027
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 362, 394
BpmI CTGGAG 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 1074
BsaI GGTCTC 1 cut(s) 1057
BsaJI CCNNGG 4 cut(s) 194, 293, 606, 1152
BsaWI WCCGGW 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 1 cut(s) 978
Bse1I ACTGG 6 cut(s) 113, 344, 358, 833, 852, 1369
Bse21I CCTNAGG 1 cut(s) 911
Bse3DI GCAATG 1 cut(s) 1338
BseBI CCWGG 3 cut(s) 228, 933, 1267
BseCI ATCGAT 1 cut(s) 1074
BseDI CCNNGG 4 cut(s) 194, 293, 606, 1152
BseGI GGATG 2 cut(s) 727, 1195
BseLI CCNNNNNNNGG 1 cut(s) 978
BseMI GCAATG 1 cut(s) 1338
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 6 cut(s) 113, 344, 358, 833, 852, 1369
BseRI GAGGAG 1 cut(s) 766
BseXI GCAGC 7 cut(s) 67, 201, 419, 524, 721, 1366, 1369
BsgI GTGCAG 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 3 cut(s) 199, 271, 1049
BshNI GGYRCC 2 cut(s) 64, 968
BshVI ATCGAT 1 cut(s) 1074
BsiSI CCGG 3 cut(s) 608, 1026, 1050
BslFI GGGAC 1 cut(s) 1171
BslI CCNNNNNNNGG 1 cut(s) 978
BsmAI GTCTC 4 cut(s) 52, 585, 1047, 1057
BsmFI GGGAC 1 cut(s) 1171
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 3 cut(s) 199, 271, 1049
Bso31I GGTCTC 1 cut(s) 1057
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 2 cut(s) 780, 1017
BspANI GGCC 3 cut(s) 199, 271, 1049
BspCNI CTCAG 1 cut(s) 709
BspDI ATCGAT 1 cut(s) 1074
BspFNI CGCG 1 cut(s) 782
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 5 cut(s) 66, 183, 633, 831, 970
BspPI GGATC 4 cut(s) 106, 176, 189, 1335
BspT107I GGYRCC 2 cut(s) 64, 968
BspTI CTTAAG 2 cut(s) 881, 986
BspTNI GGTCTC 1 cut(s) 1057
BsrDI GCAATG 1 cut(s) 1338
BsrI ACTGG 6 cut(s) 113, 344, 358, 833, 852, 1369
BssECI CCNNGG 4 cut(s) 194, 293, 606, 1152
BssT1I CCWWGG 3 cut(s) 194, 293, 1152
Bst2UI CCWGG 3 cut(s) 228, 933, 1267
Bst4CI ACNGT 4 cut(s) 596, 689, 1235, 1390
Bst6I CTCTTC 2 cut(s) 255, 642
BstAFI CTTAAG 2 cut(s) 881, 986
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 1019
BstDEI CTNAG 2 cut(s) 696, 911
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 727, 1195
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 2 cut(s) 139, 1148
BstMAI GTCTC 4 cut(s) 52, 585, 1047, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 80, 539, 706, 848
BstNI CCWGG 3 cut(s) 228, 933, 1267
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 4 cut(s) 226, 606, 931, 1265
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 7 cut(s) 67, 201, 419, 524, 721, 1366, 1369
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 2 cut(s) 181, 946
BstYI RGATCY 2 cut(s) 181, 946
Bsu15I ATCGAT 1 cut(s) 1074
Bsu36I CCTNAGG 1 cut(s) 911
BsuRI GGCC 3 cut(s) 199, 271, 1049
BsuTUI ATCGAT 1 cut(s) 1074
BtgI CCRYGG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 2 cut(s) 727, 1195
BtsIMutI CAGTG 3 cut(s) 411, 840, 859
Cac8I GCNNGC 1 cut(s) 1019
CaiI CAGNNNCTG 3 cut(s) 413, 839, 1382
CciI TCATGA 1 cut(s) 1059
CfoI GCGC 2 cut(s) 139, 1148
Cfr13I GGNCC 4 cut(s) 224, 269, 632, 829
ClaI ATCGAT 1 cut(s) 1074
CsiI ACCWGGT 2 cut(s) 931, 1265
Csp6I GTAC 1 cut(s) 1319
CviAII CATG 7 cut(s) 142, 195, 306, 627, 750, 1060, 1167
CviQI GTAC 1 cut(s) 1319
DdeI CTNAG 2 cut(s) 696, 911
DraIII CACNNNGTG 1 cut(s) 935
DriI GACNNNNNGTC 1 cut(s) 835
EaeI YGGCCR 2 cut(s) 197, 1047
Eam1104I CTCTTC 2 cut(s) 255, 642
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 2 cut(s) 255, 642
Eco130I CCWWGG 3 cut(s) 194, 293, 1152
Eco31I GGTCTC 1 cut(s) 1057
Eco32I GATATC 2 cut(s) 603, 899
Eco47I GGWCC 3 cut(s) 224, 632, 829
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 911
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 3 cut(s) 226, 931, 1265
EcoRV GATATC 2 cut(s) 603, 899
EcoT14I CCWWGG 3 cut(s) 194, 293, 1152
ErhI CCWWGG 3 cut(s) 194, 293, 1152
FaeI CATG 7 cut(s) 145, 198, 309, 630, 753, 1063, 1170
FalI AAGNNNNNCTT 2 cut(s) 1122, 1154
FaqI GGGAC 1 cut(s) 1171
FatI CATG 7 cut(s) 141, 194, 305, 626, 749, 1059, 1166
FauI CCCGC 1 cut(s) 1010
FbaI TGATCA 2 cut(s) 702, 1084
Fnu4HI GCNGC 7 cut(s) 81, 215, 408, 513, 710, 1380, 1383
FokI GGATG 2 cut(s) 734, 1202
Fsp4HI GCNGC 7 cut(s) 81, 215, 408, 513, 710, 1380, 1383
FspBI CTAG 3 cut(s) 536, 894, 1068
FspI TGCGCA 1 cut(s) 1147
GlaI GCGC 2 cut(s) 138, 1147
GluI GCNGC 7 cut(s) 81, 215, 408, 513, 710, 1380, 1383
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 3 cut(s) 199, 271, 1049
HapII CCGG 3 cut(s) 608, 1026, 1050
HhaI GCGC 2 cut(s) 139, 1148
Hin1II CATG 7 cut(s) 145, 198, 309, 630, 753, 1063, 1170
Hin6I GCGC 2 cut(s) 137, 1146
HinP1I GCGC 2 cut(s) 137, 1146
HindIII AAGCTT 1 cut(s) 983
HpaII CCGG 3 cut(s) 608, 1026, 1050
HphI GGTGA 2 cut(s) 1255, 1365
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 5 cut(s) 103, 128, 350, 865, 1209
Hpy188III TCNNGA 7 cut(s) 237, 536, 761, 822, 950, 1060, 1404
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 794
HpyAV CCTTC 1 cut(s) 1292
HpyCH4III ACNGT 4 cut(s) 596, 689, 1235, 1390
HpyCH4IV ACGT 3 cut(s) 648, 792, 1041
HpyCH4V TGCA 9 cut(s) 35, 83, 217, 313, 512, 584, 740, 878, 1338
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 539, 706, 848
HpyF3I CTNAG 2 cut(s) 696, 911
HpySE526I ACGT 3 cut(s) 648, 792, 1041
Hsp92II CATG 7 cut(s) 145, 198, 309, 630, 753, 1063, 1170
HspAI GCGC 2 cut(s) 137, 1146
Ksp22I TGATCA 2 cut(s) 702, 1084
LmnI GCTCC 2 cut(s) 230, 1304
Lsp1109I GCAGC 7 cut(s) 67, 201, 419, 524, 721, 1366, 1369
LweI GCATC 2 cut(s) 727, 777
MabI ACCWGGT 2 cut(s) 931, 1265
MaeI CTAG 3 cut(s) 536, 894, 1068
MaeII ACGT 3 cut(s) 648, 792, 1041
MaeIII GTNAC 4 cut(s) 785, 1006, 1111, 1371
MboII GAAGA 6 cut(s) 272, 623, 629, 746, 1027, 1386
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 2 cut(s) 181, 946
MluCI AATT 7 cut(s) 75, 298, 506, 728, 805, 904, 1202
MlyI GAGTC 4 cut(s) 478, 500, 511, 1188
MmeI TCCRAC 3 cut(s) 328, 578, 1222
MseI TTAA 5 cut(s) 567, 717, 882, 975, 987
MslI CAYNNNNRTG 1 cut(s) 959
MspA1I CMGCKG 2 cut(s) 700, 1379
MspCI CTTAAG 2 cut(s) 881, 986
MspI CCGG 3 cut(s) 608, 1026, 1050
MspR9I CCNGG 4 cut(s) 228, 608, 933, 1267
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 3 cut(s) 228, 933, 1267
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 4 cut(s) 80, 539, 706, 848
NciI CCSGG 1 cut(s) 608
NcoI CCATGG 1 cut(s) 194
NlaIII CATG 7 cut(s) 145, 198, 309, 630, 753, 1063, 1170
NlaIV GGNNCC 5 cut(s) 66, 183, 633, 831, 970
NmuCI GTSAC 2 cut(s) 1111, 1371
NsbI TGCGCA 1 cut(s) 1147
NspI RCATGY 1 cut(s) 145
PagI TCATGA 1 cut(s) 1059
PciI ACATGT 1 cut(s) 141
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 6 cut(s) 357, 818, 1071, 1163, 1260, 1297
PkrI GCNGC 7 cut(s) 82, 216, 409, 514, 711, 1381, 1384
PleI GAGTC 4 cut(s) 477, 499, 511, 1188
PpsI GAGTC 4 cut(s) 477, 499, 511, 1188
PpuMI RGGWCCY 1 cut(s) 632
PscI ACATGT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 804
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 3 cut(s) 226, 931, 1265
PspGI CCWGG 3 cut(s) 226, 931, 1265
PspN4I GGNNCC 5 cut(s) 66, 183, 633, 831, 970
PspPI GGNCC 4 cut(s) 224, 269, 632, 829
PspPPI RGGWCCY 1 cut(s) 632
PstNI CAGNNNCTG 3 cut(s) 413, 839, 1382
PsuI RGATCY 2 cut(s) 181, 946
PvuII CAGCTG 2 cut(s) 700, 1379
RsaI GTAC 1 cut(s) 1320
RsaNI GTAC 1 cut(s) 1319
RseI CAYNNNNRTG 1 cut(s) 959
SaqAI TTAA 5 cut(s) 567, 717, 882, 975, 987
SatI GCNGC 7 cut(s) 81, 215, 408, 513, 710, 1380, 1383
Sau96I GGNCC 4 cut(s) 224, 269, 632, 829
SchI GAGTC 4 cut(s) 478, 500, 511, 1188
ScrFI CCNGG 4 cut(s) 228, 608, 933, 1267
SexAI ACCWGGT 2 cut(s) 931, 1265
SfaNI GCATC 2 cut(s) 727, 777
SinI GGWCC 3 cut(s) 224, 632, 829
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 3 cut(s) 761, 881, 986
SmoI CTYRAG 3 cut(s) 761, 881, 986
Sse9I AATT 7 cut(s) 75, 298, 506, 728, 805, 904, 1202
SsiI CCGC 2 cut(s) 780, 1017
SspMI CTAG 3 cut(s) 536, 894, 1068
StyD4I CCNGG 4 cut(s) 226, 606, 931, 1265
StyI CCWWGG 3 cut(s) 194, 293, 1152
TaaI ACNGT 4 cut(s) 596, 689, 1235, 1390
TaiI ACGT 3 cut(s) 651, 795, 1044
TaqI TCGA 2 cut(s) 1074, 1405
TasI AATT 7 cut(s) 75, 298, 506, 728, 805, 904, 1202
TfiI GAWTC 6 cut(s) 357, 818, 1071, 1163, 1260, 1297
Tru1I TTAA 5 cut(s) 567, 717, 882, 975, 987
Tru9I TTAA 5 cut(s) 567, 717, 882, 975, 987
TscAI CASTG 3 cut(s) 418, 840, 859
TseFI GTSAC 2 cut(s) 1111, 1371
TseI GCWGC 7 cut(s) 80, 214, 407, 512, 709, 1379, 1382
Tsp45I GTSAC 2 cut(s) 1111, 1371
TspDTI ATGAA 4 cut(s) 469, 615, 977, 1048
TspRI CASTG 3 cut(s) 418, 840, 859
Vha464I CTTAAG 2 cut(s) 881, 986
VpaK11BI GGWCC 3 cut(s) 224, 632, 829
XapI RAATTY 3 cut(s) 298, 506, 904
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 1 cut(s) 145
XspI CTAG 3 cut(s) 536, 894, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.