MD03G1129600.v1.1

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
12634988 .. 12641686
6699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1129600.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGAAAATCTCTCTGTAATTCTTGCTGTCTCTCTTCTCCTTTTTATTCCACTTTTTCATGGAGGAACTGCAACAACAGCAGCTGCTGCAGGAACCATAGATGGATCAGAGGAGTGGGGATATGTTGAAGTCAGACCCAAAGCCCATATGTTCTGGTGGCTCTACAGAAGTCCCAACAGAGTTGAGGATCCCTCCAAGCCATGGCCAACCATTCTCTGGCTTCAGGGTGGACCTGGAGGTTCAGGAGTAGGGATTGGGAATTTTGAAGAGGTTGGTCCATTGGACACGAATTTGAACCCAAGAAACTCAACCTGGTTGCAAAAAGCAGATCTTTTATTTGTTGACAACCCAGTTGGGACTGGATACAGTTTTGTGGAGGATACGTCTCTGTTTGTGAAAAATGATTTGGAGGCAGCTGCTGATTTGACCACATTGCTGGTGGAGGTTTTCAATAGAAATGAGAGCCTCCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCCTATGGAGGCAAATTTGCAGTCACTCTTGGACTTTCAGCTCTCAAAGCCATTCAACAAGGAAAGCTAAAACTTAGACTTGGAGGAGTGGCATTGGGAGACAGTTGGATCTCCCCGGAAGATTTTGTGCTTTCATGGGGTCCTCTGCTCAAAGACGTGTCAAGGCTTGACGACATTGGATTGCAGAAATCAAATAATATGGCTCAGAGAATAAAGCAACAGATTCAGGATGGTCAGTTGGTGGACGCAACCAATTCTTGGGGTGAACTTGAGCAAGTCATCATGTCTAACAGCAATGCTGTGGATTTCTATAATTTTCTGTTGGATTCAGGAATGGATCCAGTTTCATCCTTGGCAACAATTCAATATAACAAAGGAATTTACGTTAAAAAATATTCAAGATACCTGAGTTCTTTAAGGTCTTCAGCAGGTGGTGGTAATGGTGATCTTGATTCTTTGTTAAACGGTGCCATAAAAAAGAAGCTTAAGATAATCCCCGATGATGTGACATGGGGAGGGCAGTCTGATTACGTGTTCTCAGCCCTAACAGGCGATTTTATGAAACCAAGGATTAATGAGGTTGATGAACTCCTTGCTAAAGGGATCAATGTCACAATATACAATGGGCAAGTTGATCTCATATGTGCAACCAAGGGGACTGAAGCATGGGTCGAAAAGCTCAAGTGGGAAGGACTCCCAAATTTCTTGAACAAGAGTAGAGCCCCTCTTTATTGTGGCAAAGAAGGATTTACAAGAGGATTCACCAGGTCGTACAAAAACCTGCACTTCTATTGGATTCTTGGAGCAGGACATTTTGTACCGGTGGATCAGCCATGCATTGCATTAAACATGGTGGCTGACATCACTCAATCGCCTGCTGCTGCTGCTTCTACGTAG

Protein Analysis

465

Amino Acids

50.76

Weight (kDa)

5.24

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 33 - 454 8.6e-77 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 917
Acc36I ACCTGC 2 cut(s) 917, 1287
AccB1I GGYRCC 1 cut(s) 965
AccB7I CCANNNNNTGG 3 cut(s) 201, 216, 756
AclWI GGATC 8 cut(s) 112, 182, 195, 614, 830, 843, 1109, 1332
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 5 cut(s) 259, 289, 512, 876, 1198
AcuI CTGAAG 3 cut(s) 206, 906, 1179
AfaI GTAC 2 cut(s) 1271, 1317
AfiI CCNNNNNNNGG 3 cut(s) 201, 216, 756
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 2 cut(s) 654, 1029
AgeI ACCGGT 1 cut(s) 1318
AgsI TTSAA 8 cut(s) 128, 266, 295, 451, 554, 863, 897, 1207
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 3 cut(s) 232, 311, 1262
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 6 cut(s) 83, 416, 539, 565, 982, 1177
AluI AGCT 6 cut(s) 83, 416, 539, 565, 982, 1177
Alw26I GTCTC 3 cut(s) 34, 390, 591
AlwI GGATC 8 cut(s) 112, 182, 195, 614, 830, 843, 1109, 1332
AlwNI CAGNNNCTG 3 cut(s) 83, 86, 419
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 8 cut(s) 80, 83, 86, 413, 416, 1376, 1379, 1382
ApoI RAATTY 5 cut(s) 259, 289, 512, 876, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AseI ATTAAT 1 cut(s) 1071
AsiGI ACCGGT 1 cut(s) 1318
AspS9I GGNCC 3 cut(s) 230, 275, 638
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 773, 953, 1252
AvaII GGWCC 3 cut(s) 230, 275, 638
BaeI ACNNNNGTAYC 2 cut(s) 892, 925
BalI TGGCCA 1 cut(s) 205
BamHI GGATCC 2 cut(s) 187, 835
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 1 cut(s) 1222
BbsI GAAGAC 1 cut(s) 912
BbvI GCAGC 8 cut(s) 70, 73, 92, 403, 425, 1363, 1366, 1369
BccI CCATC 2 cut(s) 95, 722
BciT130I CCWGG 3 cut(s) 234, 313, 1264
BciVI GTATCC 2 cut(s) 356, 373
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 34, 390, 591
BfmI CTRYAG 2 cut(s) 87, 163
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 2 cut(s) 917, 1287
BfuI GTATCC 2 cut(s) 356, 373
BglII AGATCT 1 cut(s) 328
BisI GCNGC 8 cut(s) 81, 84, 87, 414, 417, 1377, 1380, 1383
BlsI GCNGC 8 cut(s) 82, 85, 88, 415, 418, 1378, 1381, 1384
Bme1390I CCNGG 4 cut(s) 234, 313, 614, 1264
Bme18I GGWCC 3 cut(s) 230, 275, 638
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 230, 275, 638
BmiI GGNNCC 5 cut(s) 94, 189, 639, 837, 967
BmrFI CCNGG 4 cut(s) 234, 313, 614, 1264
BmrI ACTGGG 1 cut(s) 344
BmuI ACTGGG 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 912
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 788, 1163
BpuMI CCSGG 1 cut(s) 614
BsaAI YACGTR 2 cut(s) 1030, 1392
BsaJI CCNNGG 5 cut(s) 200, 612, 849, 1064, 1149
BsaWI WCCGGW 1 cut(s) 1318
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 216, 756
Bse118I RCCGGY 1 cut(s) 1318
Bse1I ACTGG 3 cut(s) 350, 364, 839
Bse3DI GCAATG 3 cut(s) 431, 799, 1335
BseBI CCWGG 3 cut(s) 234, 313, 1264
BseDI CCNNGG 5 cut(s) 200, 612, 849, 1064, 1149
BseGI GGATG 2 cut(s) 733, 845
BseLI CCNNNNNNNGG 3 cut(s) 201, 216, 756
BseMI GCAATG 3 cut(s) 431, 799, 1335
BseMII CTCAG 3 cut(s) 716, 896, 1050
BseNI ACTGG 3 cut(s) 350, 364, 839
BseRI GAGGAG 2 cut(s) 125, 597
BseXI GCAGC 8 cut(s) 70, 73, 92, 403, 425, 1363, 1366, 1369
BsgI GTGCAG 1 cut(s) 1265
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 965
BshTI ACCGGT 1 cut(s) 1318
BsiSI CCGG 2 cut(s) 614, 1319
BslFI GGGAC 3 cut(s) 156, 370, 1168
BslI CCNNNNNNNGG 3 cut(s) 201, 216, 756
BsmAI GTCTC 3 cut(s) 34, 390, 591
BsmBI CGTCTC 1 cut(s) 390
BsmFI GGGAC 3 cut(s) 156, 370, 1168
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 1222
Bsp143I GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
Bsp19I CCATGG 1 cut(s) 200
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 3 cut(s) 715, 897, 1049
BspLI GGNNCC 5 cut(s) 94, 189, 639, 837, 967
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 2 cut(s) 917, 1287
BspPI GGATC 8 cut(s) 112, 182, 195, 614, 830, 843, 1109, 1332
BspT107I GGYRCC 1 cut(s) 965
BspTI CTTAAG 1 cut(s) 983
BsrDI GCAATG 3 cut(s) 431, 799, 1335
BsrFI RCCGGY 1 cut(s) 1318
BsrI ACTGG 3 cut(s) 350, 364, 839
BssAI RCCGGY 1 cut(s) 1318
BssECI CCNNGG 5 cut(s) 200, 612, 849, 1064, 1149
BssMI GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
BssT1I CCWWGG 4 cut(s) 200, 849, 1064, 1149
Bst2UI CCWGG 3 cut(s) 234, 313, 1264
Bst4CI ACNGT 3 cut(s) 368, 602, 965
Bst6I CTCTTC 2 cut(s) 39, 261
BstAFI CTTAAG 1 cut(s) 983
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 2 cut(s) 1030, 1392
BstC8I GCNNGC 1 cut(s) 1374
BstDEI CTNAG 4 cut(s) 572, 702, 905, 1036
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 733, 845
BstKTI GATC 9 cut(s) 107, 190, 331, 609, 838, 946, 1104, 1135, 1327
BstMAI GTCTC 3 cut(s) 34, 390, 591
BstMBI GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
BstMWI GCNNNNNNNGC 4 cut(s) 77, 86, 545, 1382
BstNI CCWGG 3 cut(s) 234, 313, 1264
BstSCI CCNGG 4 cut(s) 232, 311, 612, 1262
BstSFI CTRYAG 2 cut(s) 87, 163
BstSNI TACGTA 1 cut(s) 1392
BstV1I GCAGC 8 cut(s) 70, 73, 92, 403, 425, 1363, 1366, 1369
BstV2I GAAGAC 1 cut(s) 912
BstX2I RGATCY 4 cut(s) 187, 328, 606, 835
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 4 cut(s) 187, 328, 606, 835
BsuI GTATCC 2 cut(s) 356, 373
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 200
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 2 cut(s) 733, 845
BveI ACCTGC 2 cut(s) 917, 1287
Cac8I GCNNGC 1 cut(s) 1374
CaiI CAGNNNCTG 3 cut(s) 83, 86, 419
Cfr10I RCCGGY 1 cut(s) 1318
Cfr13I GGNCC 3 cut(s) 230, 275, 638
CseI GACGC 1 cut(s) 752
CsiI ACCWGGT 2 cut(s) 311, 1262
Csp6I GTAC 2 cut(s) 1270, 1316
CspAI ACCGGT 1 cut(s) 1318
CviAII CATG 8 cut(s) 59, 201, 633, 781, 1008, 1164, 1332, 1348
CviQI GTAC 2 cut(s) 1270, 1316
DdeI CTNAG 4 cut(s) 572, 702, 905, 1036
DpnI GATC 9 cut(s) 106, 189, 330, 608, 837, 945, 1103, 1134, 1326
DpnII GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 2 cut(s) 39, 261
EarI CTCTTC 2 cut(s) 39, 261
Eco105I TACGTA 1 cut(s) 1392
Eco130I CCWWGG 4 cut(s) 200, 849, 1064, 1149
Eco24I GRGCYC 1 cut(s) 1222
Eco47I GGWCC 3 cut(s) 230, 275, 638
Eco57I CTGAAG 3 cut(s) 206, 906, 1179
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 3 cut(s) 232, 311, 1262
EcoT14I CCWWGG 4 cut(s) 200, 849, 1064, 1149
EcoT22I ATGCAT 1 cut(s) 1337
EcoT38I GRGCYC 1 cut(s) 1222
ErhI CCWWGG 4 cut(s) 200, 849, 1064, 1149
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 8 cut(s) 62, 204, 636, 784, 1011, 1167, 1335, 1351
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 3 cut(s) 156, 370, 1168
FatI CATG 8 cut(s) 58, 200, 632, 780, 1007, 1163, 1331, 1347
FauNDI CATATG 2 cut(s) 147, 1139
Fnu4HI GCNGC 8 cut(s) 81, 84, 87, 414, 417, 1377, 1380, 1383
FokI GGATG 2 cut(s) 740, 832
FriOI GRGCYC 1 cut(s) 1222
Fsp4HI GCNGC 8 cut(s) 81, 84, 87, 414, 417, 1377, 1380, 1383
GluI GCNGC 8 cut(s) 81, 84, 87, 414, 417, 1377, 1380, 1383
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 614, 1319
HgaI GACGC 1 cut(s) 752
Hin1II CATG 8 cut(s) 62, 204, 636, 784, 1011, 1167, 1335, 1351
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 980
HinfI GANTC 8 cut(s) 475, 497, 721, 824, 950, 1191, 1257, 1294
HpaII CCGG 2 cut(s) 614, 1319
HphI GGTGA 3 cut(s) 773, 953, 1252
Hpy166II GTNNAC 4 cut(s) 230, 343, 742, 764
Hpy188I TCNGA 4 cut(s) 109, 134, 705, 1024
Hpy188III TCNNGA 6 cut(s) 243, 725, 828, 897, 947, 1204
Hpy8I GTNNAC 4 cut(s) 230, 343, 742, 764
HpyAV CCTTC 2 cut(s) 1181, 1235
HpyCH4III ACNGT 3 cut(s) 368, 602, 965
HpyCH4IV ACGT 5 cut(s) 383, 654, 882, 1029, 1391
HpyCH4V TGCA 9 cut(s) 71, 89, 319, 518, 682, 1145, 1282, 1335, 1340
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 86, 545, 1382
HpyF3I CTNAG 4 cut(s) 572, 702, 905, 1036
HpySE526I ACGT 5 cut(s) 383, 654, 882, 1029, 1391
Hsp92II CATG 8 cut(s) 62, 204, 636, 784, 1011, 1167, 1335, 1351
Kzo9I GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
LmnI GCTCC 1 cut(s) 1301
Lsp1109I GCAGC 8 cut(s) 70, 73, 92, 403, 425, 1363, 1366, 1369
MabI ACCWGGT 2 cut(s) 311, 1262
MaeII ACGT 5 cut(s) 383, 654, 882, 1029, 1391
MaeIII GTNAC 3 cut(s) 520, 1003, 1108
MalI GATC 9 cut(s) 106, 189, 330, 608, 837, 945, 1103, 1134, 1326
MboI GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
MboII GAAGA 4 cut(s) 26, 278, 629, 912
MflI RGATCY 4 cut(s) 187, 328, 606, 835
MhlI GDGCHC 1 cut(s) 1222
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 9 cut(s) 18, 259, 289, 512, 751, 811, 858, 876, 1198
MluNI TGGCCA 1 cut(s) 205
MlyI GAGTC 3 cut(s) 484, 506, 1185
MmeI TCCRAC 2 cut(s) 584, 801
Mox20I TGGCCA 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 1337
MscI TGGCCA 1 cut(s) 205
MseI TTAA 6 cut(s) 885, 914, 959, 984, 1071, 1343
Msp20I TGGCCA 1 cut(s) 205
MspA1I CMGCKG 2 cut(s) 83, 416
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 2 cut(s) 614, 1319
MspR9I CCNGG 4 cut(s) 234, 313, 614, 1264
MvaI CCWGG 3 cut(s) 234, 313, 1264
MwoI GCNNNNNNNGC 4 cut(s) 77, 86, 545, 1382
NciI CCSGG 1 cut(s) 614
NcoI CCATGG 1 cut(s) 200
NdeI CATATG 2 cut(s) 147, 1139
NdeII GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
NlaIII CATG 8 cut(s) 62, 204, 636, 784, 1011, 1167, 1335, 1351
NlaIV GGNNCC 5 cut(s) 94, 189, 639, 837, 967
NmuCI GTSAC 3 cut(s) 520, 1003, 1108
NsiI ATGCAT 1 cut(s) 1337
PaqCI CACCTGC 1 cut(s) 917
PfeI GAWTC 5 cut(s) 721, 824, 950, 1257, 1294
PflMI CCANNNNNTGG 3 cut(s) 201, 216, 756
PinAI ACCGGT 1 cut(s) 1318
PkrI GCNGC 8 cut(s) 82, 85, 88, 415, 418, 1378, 1381, 1384
PleI GAGTC 3 cut(s) 483, 505, 1185
PpsI GAGTC 3 cut(s) 483, 505, 1185
Ppu21I YACGTR 2 cut(s) 1030, 1392
PpuMI RGGWCCY 1 cut(s) 638
PshBI ATTAAT 1 cut(s) 1071
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 3 cut(s) 232, 311, 1262
PspGI CCWGG 3 cut(s) 232, 311, 1262
PspN4I GGNNCC 5 cut(s) 94, 189, 639, 837, 967
PspPI GGNCC 3 cut(s) 230, 275, 638
PspPPI RGGWCCY 1 cut(s) 638
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 3 cut(s) 83, 86, 419
PsuI RGATCY 4 cut(s) 187, 328, 606, 835
PvuII CAGCTG 2 cut(s) 83, 416
RsaI GTAC 2 cut(s) 1271, 1317
RsaNI GTAC 2 cut(s) 1270, 1316
SaqAI TTAA 6 cut(s) 885, 914, 959, 984, 1071, 1343
SatI GCNGC 8 cut(s) 81, 84, 87, 414, 417, 1377, 1380, 1383
Sau3AI GATC 9 cut(s) 104, 187, 328, 606, 835, 943, 1101, 1132, 1324
Sau96I GGNCC 3 cut(s) 230, 275, 638
SchI GAGTC 3 cut(s) 484, 506, 1185
ScrFI CCNGG 4 cut(s) 234, 313, 614, 1264
SduI GDGCHC 1 cut(s) 1222
SexAI ACCWGGT 2 cut(s) 311, 1262
SfcI CTRYAG 2 cut(s) 87, 163
SinI GGWCC 3 cut(s) 230, 275, 638
SmlI CTYRAG 3 cut(s) 767, 983, 1178
SmoI CTYRAG 3 cut(s) 767, 983, 1178
SnaBI TACGTA 1 cut(s) 1392
Sse9I AATT 9 cut(s) 18, 259, 289, 512, 751, 811, 858, 876, 1198
SspI AATATT 1 cut(s) 893
StyD4I CCNGG 4 cut(s) 232, 311, 612, 1262
StyI CCWWGG 4 cut(s) 200, 849, 1064, 1149
TaaI ACNGT 3 cut(s) 368, 602, 965
TaiI ACGT 5 cut(s) 386, 657, 885, 1032, 1394
TaqI TCGA 1 cut(s) 1170
TasI AATT 9 cut(s) 18, 259, 289, 512, 751, 811, 858, 876, 1198
TfiI GAWTC 5 cut(s) 721, 824, 950, 1257, 1294
Tru1I TTAA 6 cut(s) 885, 914, 959, 984, 1071, 1343
Tru9I TTAA 6 cut(s) 885, 914, 959, 984, 1071, 1343
TseFI GTSAC 3 cut(s) 520, 1003, 1108
TseI GCWGC 8 cut(s) 80, 83, 86, 413, 416, 1376, 1379, 1382
Tsp45I GTSAC 3 cut(s) 520, 1003, 1108
TspDTI ATGAA 6 cut(s) 47, 475, 621, 834, 1073, 1098
Van91I CCANNNNNTGG 3 cut(s) 201, 216, 756
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 3 cut(s) 230, 275, 638
VspI ATTAAT 1 cut(s) 1071
XapI RAATTY 5 cut(s) 259, 289, 512, 876, 1198
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 436
Zsp2I ATGCAT 1 cut(s) 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.