Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

76953126 .. 76962756

Gene Structure 9631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG540300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTCGCCTTCGTGGTTGTCATCGGAATCCGCATTGTCTGTTTGGGCGGTCATGGTGGCAGCAGAAGCATCTTCTTTTCTTGTGGCGTTAATTTGCTGCGTCTGTTTATTCTTCACGCTTCTTCACCTCAACAGGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCATTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGAAGCACACATGTTCTGGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

232

Amino Acids

25.11

Weight (kDa)

9.11

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	100 - 211	1.2e-27	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	31, 48
AcsI	RAATTY	2 cut(s)	379, 587
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	370, 384, 526, 629, 691
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	5 cut(s)	314, 520, 614, 646, 659
AluI	AGCT	5 cut(s)	314, 520, 614, 646, 659
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	5 cut(s)	60, 97, 161, 488, 593
ApoI	RAATTY	2 cut(s)	379, 587
Asp700I	GAANNNNTTC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	305, 350, 669
AsuHPI	GGTGA	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	339
AvaII	GGWCC	2 cut(s)	305, 669
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
BbvI	GCAGC	5 cut(s)	72, 84, 148, 500, 605
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	5 cut(s)	61, 98, 162, 489, 594
BlsI	GCNGC	5 cut(s)	62, 99, 163, 490, 595
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	305, 669
BmgT120I	GGNCC	3 cut(s)	305, 350, 669
BmiI	GGNNCC	2 cut(s)	433, 670
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	419
BpmI	CTGGAG	2 cut(s)	330, 527
Bpu14I	TTCGAA	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	5 cut(s)	72, 84, 148, 500, 605
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	134
BsnI	GGCC	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	2 cut(s)	31, 48
BspANI	GGCC	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	433, 670
BspMAI	CTGCAG	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	336, 542, 679
BstBI	TTCGAA	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	264, 647
BstKTI	GATC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 620
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	5 cut(s)	72, 84, 148, 500, 605
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	492
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	305, 350, 669
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	3 cut(s)	53, 294, 664
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	2 cut(s)	264, 647
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
Eam1104I	CTCTTC	3 cut(s)	336, 542, 679
EarI	CTCTTC	3 cut(s)	336, 542, 679
Eco130I	CCWWGG	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	305, 669
Eco57I	CTGAAG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	3 cut(s)	56, 297, 667
FaiI	YATR	6 cut(s)	54, 205, 295, 579, 617, 665
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FatI	CATG	3 cut(s)	52, 293, 663
Fnu4HI	GCNGC	5 cut(s)	61, 98, 162, 489, 594
Fsp4HI	GCNGC	5 cut(s)	61, 98, 162, 489, 594
GluI	GCNGC	5 cut(s)	61, 98, 162, 489, 594
GsuI	CTGGAG	2 cut(s)	330, 527
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	56, 297, 667
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	5 cut(s)	27, 438, 550, 572, 598
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	318, 544
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	19, 626
HpyCH4IV	ACGT	2 cut(s)	386, 685
HpyCH4V	TGCA	4 cut(s)	164, 225, 394, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 620
HpyF3I	CTNAG	2 cut(s)	264, 647
HpySE526I	ACGT	2 cut(s)	386, 685
Hsp92II	CATG	3 cut(s)	56, 297, 667
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	311, 656
Lsp1109I	GCAGC	5 cut(s)	72, 84, 148, 500, 605
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	2 cut(s)	386, 685
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	8 cut(s)	64, 104, 114, 295, 353, 559, 641, 666
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	4 cut(s)	91, 364, 379, 587
MlyI	GAGTC	3 cut(s)	559, 581, 592
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	8 cut(s)	138, 337, 445, 478, 551, 564, 575, 682
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	2 cut(s)	90, 275
MslI	CAYNNNNRTG	1 cut(s)	202
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	66, 620
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	56, 297, 667
NlaIV	GGNNCC	2 cut(s)	433, 670
NspI	RCATGY	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	339
PciI	ACATGT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	27, 438
PkrI	GCNGC	5 cut(s)	62, 99, 163, 490, 595
PleI	GAGTC	3 cut(s)	558, 580, 592
PpsI	GAGTC	3 cut(s)	558, 580, 592
PpuMI	RGGWCCY	1 cut(s)	669
PscI	ACATGT	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	433, 670
PspPI	GGNCC	3 cut(s)	305, 350, 669
PspPPI	RGGWCCY	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	90, 275
SatI	GCNGC	5 cut(s)	61, 98, 162, 489, 594
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	3 cut(s)	305, 350, 669
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	3 cut(s)	559, 581, 592
ScrFI	CCNGG	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	339
SinI	GGWCC	2 cut(s)	305, 669
SmiMI	CAYNNNNRTG	1 cut(s)	202
Sse9I	AATT	4 cut(s)	91, 364, 379, 587
SsiI	CCGC	2 cut(s)	31, 48
SspI	AATATT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	374
TaiI	ACGT	2 cut(s)	389, 688
TaqI	TCGA	1 cut(s)	339
TasI	AATT	4 cut(s)	91, 364, 379, 587
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	27, 438
Tru1I	TTAA	2 cut(s)	90, 275
Tru9I	TTAA	2 cut(s)	90, 275
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	5 cut(s)	60, 97, 161, 488, 593
TspDTI	ATGAA	2 cut(s)	550, 652
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	305, 669
XapI	RAATTY	2 cut(s)	379, 587
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.