Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

50975955 .. 50980253

Gene Structure 4299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCCTACTACCAAATTTATTCAGATTACCTTATTACCATAAGTATGCTATTTAGATCACTGGTAGAGTCAGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAACTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGATGATGATGGCTTGGAGAAATCAAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATTCATGGAACCTTGAGAACCTCATTAGCTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACATTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGGCAACTCTTGCTCTTGCTATATTTCCACATTGTAGGCTCAAATGCTTGGGATCGAGAAAACTTTGCCAAATTTCTATTTTGTGGACAGAATCCTCTTTATAGAATATACATCAGTTCCAAAATGAAAATCGATGTTACTAATATATCCAGACATCGGTTCATTGTTAAAAACGATATACTACCGAGTGCCAGACATCAGTTCCGAAATGAAAACCGATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

322

Amino Acids

36.05

Weight (kDa)

5.75

Isoelectric Point (pI)

18.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	25 - 122	4.7e-23	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	801
AcsI	RAATTY	4 cut(s)	15, 142, 350, 812
AcuI	CTGAAG	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	897
AflII	CTTAAG	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	133, 147, 289, 417, 583
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	7 cut(s)	77, 283, 377, 463, 537, 604, 659
AluI	AGCT	7 cut(s)	77, 283, 377, 463, 537, 604, 659
Alw26I	GTCTC	2 cut(s)	663, 673
AlwI	GGATC	1 cut(s)	801
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	3, 113
ApeKI	GCWGC	3 cut(s)	251, 356, 472
ApoI	RAATTY	4 cut(s)	15, 142, 350, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspS9I	GGNCC	2 cut(s)	113, 395
AsuII	TTCGAA	2 cut(s)	102, 654
AvaII	GGWCC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	263, 368, 484
BccI	CCATC	2 cut(s)	425, 479
BciT130I	CCWGG	1 cut(s)	552
BclI	TGATCA	2 cut(s)	465, 700
BcoDI	GTCTC	2 cut(s)	663, 673
BfrI	CTTAAG	1 cut(s)	605
BglII	AGATCT	2 cut(s)	166, 565
BisI	GCNGC	3 cut(s)	252, 357, 473
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	3 cut(s)	253, 358, 474
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	113, 395
BmiI	GGNNCC	3 cut(s)	196, 396, 518
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	2 cut(s)	102, 654
BpuEI	CTTGAG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	873
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	2 cut(s)	197, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	897
Bse1I	ACTGG	2 cut(s)	66, 188
BseBI	CCWGG	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	873
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	66, 188
BseXI	GCAGC	3 cut(s)	263, 368, 484
BshFI	GGCC	2 cut(s)	5, 115
BshVI	ATCGAT	1 cut(s)	873
BsiSI	CCGG	2 cut(s)	198, 666
BslI	CCNNNNNNNGG	1 cut(s)	897
BsmAI	GTCTC	2 cut(s)	663, 673
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	5, 115
Bso31I	GGTCTC	1 cut(s)	673
Bsp119I	TTCGAA	2 cut(s)	102, 654
Bsp143I	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
Bsp1720I	GCTNAGC	1 cut(s)	459
BspANI	GGCC	2 cut(s)	5, 115
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	873
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	196, 396, 518
BspPI	GGATC	1 cut(s)	801
BspQI	GCTCTTC	1 cut(s)	544
BspT104I	TTCGAA	2 cut(s)	102, 654
BspTI	CTTAAG	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	673
BsrI	ACTGG	2 cut(s)	66, 188
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	4 cut(s)	99, 305, 405, 544
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstBI	TTCGAA	2 cut(s)	102, 654
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	6 cut(s)	59, 169, 468, 568, 703, 796
BstMAI	GTCTC	2 cut(s)	663, 673
BstMBI	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 751
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	263, 368, 484
BstX2I	RGATCY	2 cut(s)	166, 565
BstYI	RGATCY	2 cut(s)	166, 565
Bsu15I	ATCGAT	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	5, 115
BsuTUI	ATCGAT	1 cut(s)	873
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	3 cut(s)	59, 255, 457
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	113, 395
ClaI	ATCGAT	1 cut(s)	873
CsiI	ACCWGGT	1 cut(s)	550
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	3 cut(s)	390, 513, 676
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	6 cut(s)	58, 168, 467, 567, 702, 795
DpnII	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
DraIII	CACNNNGTG	1 cut(s)	554
Eam1104I	CTCTTC	4 cut(s)	99, 305, 405, 544
EarI	CTCTTC	4 cut(s)	99, 305, 405, 544
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	393, 516, 679
FatI	CATG	3 cut(s)	389, 512, 675
FbaI	TGATCA	2 cut(s)	465, 700
Fnu4HI	GCNGC	3 cut(s)	252, 357, 473
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	252, 357, 473
GluI	GCNGC	3 cut(s)	252, 357, 473
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	5, 115
HapII	CCGG	2 cut(s)	198, 666
Hin1II	CATG	3 cut(s)	393, 516, 679
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	6 cut(s)	68, 201, 313, 335, 361, 832
HpaII	CCGG	2 cut(s)	198, 666
Hpy166II	GTNNAC	1 cut(s)	827
Hpy188I	TCNGA	3 cut(s)	25, 643, 947
Hpy188III	TCNNGA	7 cut(s)	72, 81, 307, 569, 676, 797, 891
Hpy8I	GTNNAC	1 cut(s)	827
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	149, 411
HpyCH4V	TGCA	4 cut(s)	157, 356, 503, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 751
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	2 cut(s)	149, 411
Hsp92II	CATG	3 cut(s)	393, 516, 679
Ksp22I	TGATCA	2 cut(s)	465, 700
Kzo9I	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	263, 368, 484
LweI	GCATC	1 cut(s)	490
MabI	ACCWGGT	1 cut(s)	550
MaeII	ACGT	2 cut(s)	149, 411
MaeIII	GTNAC	4 cut(s)	625, 727, 877, 962
MalI	GATC	6 cut(s)	58, 168, 467, 567, 702, 795
MboI	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
MboII	GAAGA	5 cut(s)	116, 322, 392, 509, 531
MflI	RGATCY	2 cut(s)	166, 565
MluCI	AATT	8 cut(s)	15, 127, 142, 350, 491, 508, 687, 812
MlyI	GAGTC	4 cut(s)	77, 322, 344, 355
MmeI	TCCRAC	2 cut(s)	172, 666
MseI	TTAA	4 cut(s)	480, 594, 606, 909
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	463
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	2 cut(s)	198, 666
MspR9I	CCNGG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	469, 751
NdeII	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
NlaIII	CATG	3 cut(s)	393, 516, 679
NlaIV	GGNNCC	3 cut(s)	196, 396, 518
NmuCI	GTSAC	2 cut(s)	625, 727
NspV	TTCGAA	2 cut(s)	102, 654
PagI	TCATGA	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	544
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	201, 832
PkrI	GCNGC	3 cut(s)	253, 358, 474
PleI	GAGTC	4 cut(s)	76, 321, 343, 355
PpsI	GAGTC	4 cut(s)	76, 321, 343, 355
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	3 cut(s)	196, 396, 518
PspPI	GGNCC	2 cut(s)	113, 395
PspPPI	RGGWCCY	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	166, 565
PvuII	CAGCTG	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	544
SaqAI	TTAA	4 cut(s)	480, 594, 606, 909
SatI	GCNGC	3 cut(s)	252, 357, 473
Sau3AI	GATC	6 cut(s)	56, 166, 465, 565, 700, 793
Sau96I	GGNCC	2 cut(s)	113, 395
SchI	GAGTC	4 cut(s)	77, 322, 344, 355
ScrFI	CCNGG	1 cut(s)	552
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	490
SfuI	TTCGAA	2 cut(s)	102, 654
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	521, 605
SmoI	CTYRAG	2 cut(s)	521, 605
Sse9I	AATT	8 cut(s)	15, 127, 142, 350, 491, 508, 687, 812
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	2 cut(s)	152, 414
TaqI	TCGA	4 cut(s)	102, 654, 796, 873
TasI	AATT	8 cut(s)	15, 127, 142, 350, 491, 508, 687, 812
TfiI	GAWTC	2 cut(s)	201, 832
Tru1I	TTAA	4 cut(s)	480, 594, 606, 909
Tru9I	TTAA	4 cut(s)	480, 594, 606, 909
TscAI	CASTG	3 cut(s)	66, 262, 457
TseFI	GTSAC	2 cut(s)	625, 727
TseI	GCWGC	3 cut(s)	251, 356, 472
Tsp45I	GTSAC	2 cut(s)	625, 727
TspDTI	ATGAA	8 cut(s)	313, 378, 501, 531, 664, 881, 892, 966
TspRI	CASTG	3 cut(s)	66, 262, 457
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	4 cut(s)	15, 142, 350, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.