Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Reverse (-)

74029397 .. 74032977

Gene Structure 3581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG531300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATTGTTGGAAGGTCAGGTTGATAACTGTAGTCATAAAAGGAAGAAAGATCAAGGAAATTGAGCTGGCTTCTTCACCTCAACAGGGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCATTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGAAGCACACATGTGGACCTGGAGCTTCAGGAGTTGGGATTGGGAACTTCGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCAGATCTTTTATTTGTGGATAACCCAGTTGGAACCGGATTCAGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCACTGATTTGACAACACTACTGAAAGAGCTATTCAACAGAAATGAGAGCCTCCAGAAGAGTCCTCTGTTCATTGTGGCAGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAGCTATAAAAGCCATTGAAGAAGGAACACTAAAGCTTAGACTTGGAGCTTTCATGGGGTCCTCTTCTCAAAGACGTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

214

Amino Acids

23.54

Weight (kDa)

9.13

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	84 - 193	1.7e-26	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	325, 533
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	5 cut(s)	316, 330, 472, 575, 637
AjnI	CCWGG	1 cut(s)	253
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	6 cut(s)	67, 260, 466, 560, 592, 605
AluI	AGCT	6 cut(s)	67, 260, 466, 560, 592, 605
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	113, 434, 539
ApoI	RAATTY	2 cut(s)	325, 533
Asp700I	GAANNNNTTC	1 cut(s)	166
AspS9I	GGNCC	3 cut(s)	251, 296, 615
AsuHPI	GGTGA	1 cut(s)	69
AsuII	TTCGAA	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	251, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbvI	GCAGC	3 cut(s)	100, 446, 551
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	255
BfmI	CTRYAG	2 cut(s)	30, 114
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	3 cut(s)	114, 435, 540
BlsI	GCNGC	3 cut(s)	115, 436, 541
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	251, 615
BmgT120I	GGNCC	3 cut(s)	251, 296, 615
BmiI	GGNNCC	2 cut(s)	379, 616
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	365
BpmI	CTGGAG	2 cut(s)	276, 473
Bpu14I	TTCGAA	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	100, 446, 551
BshFI	GGCC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	51, 349
BspANI	GGCC	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	379, 616
BspMAI	CTGCAG	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	51, 349
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	3 cut(s)	282, 488, 625
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	216, 593
BstKTI	GATC	2 cut(s)	54, 352
BstMBI	GATC	2 cut(s)	51, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	30, 114
BstV1I	GCAGC	3 cut(s)	100, 446, 551
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	298
BtgZI	GCGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	251, 296, 615
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	246, 610
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	216, 593
DpnI	GATC	2 cut(s)	53, 351
DpnII	GATC	2 cut(s)	51, 349
Eam1104I	CTCTTC	3 cut(s)	282, 488, 625
EarI	CTCTTC	3 cut(s)	282, 488, 625
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	251, 615
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	249, 613
FaiI	YATR	6 cut(s)	38, 157, 247, 525, 563, 611
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FatI	CATG	2 cut(s)	245, 609
Fnu4HI	GCNGC	3 cut(s)	114, 435, 540
Fsp4HI	GCNGC	3 cut(s)	114, 435, 540
GluI	GCNGC	3 cut(s)	114, 435, 540
GsuI	CTGGAG	2 cut(s)	276, 473
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	2 cut(s)	249, 613
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	384, 496, 518, 544
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	264, 490
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	7, 572
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	332, 631
HpyCH4V	TGCA	4 cut(s)	116, 177, 340, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	2 cut(s)	216, 593
HpySE526I	ACGT	2 cut(s)	332, 631
Hsp92II	CATG	2 cut(s)	249, 613
Kzo9I	GATC	2 cut(s)	51, 349
LmnI	GCTCC	2 cut(s)	257, 602
Lsp1109I	GCAGC	3 cut(s)	100, 446, 551
MaeII	ACGT	2 cut(s)	332, 631
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	53, 351
MboI	GATC	2 cut(s)	51, 349
MboII	GAAGA	7 cut(s)	57, 66, 247, 299, 505, 587, 612
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	4 cut(s)	60, 310, 325, 533
MlyI	GAGTC	3 cut(s)	505, 527, 538
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	8 cut(s)	90, 283, 391, 424, 497, 510, 521, 628
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	154, 246
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	2 cut(s)	51, 349
NlaIII	CATG	2 cut(s)	249, 613
NlaIV	GGNNCC	2 cut(s)	379, 616
NspI	RCATGY	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	285
OliI	CACNNNNGTG	1 cut(s)	246
PciI	ACATGT	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	115, 436, 541
PleI	GAGTC	3 cut(s)	504, 526, 538
PpsI	GAGTC	3 cut(s)	504, 526, 538
PpuMI	RGGWCCY	1 cut(s)	615
PscI	ACATGT	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	379, 616
PspPI	GGNCC	3 cut(s)	251, 296, 615
PspPPI	RGGWCCY	1 cut(s)	615
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	2 cut(s)	154, 246
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	114, 435, 540
Sau3AI	GATC	2 cut(s)	51, 349
Sau96I	GGNCC	3 cut(s)	251, 296, 615
ScaI	AGTACT	1 cut(s)	166
SchI	GAGTC	3 cut(s)	505, 527, 538
ScrFI	CCNGG	1 cut(s)	255
SfcI	CTRYAG	2 cut(s)	30, 114
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	2 cut(s)	251, 615
SmiMI	CAYNNNNRTG	2 cut(s)	154, 246
Sse9I	AATT	4 cut(s)	60, 310, 325, 533
SspI	AATATT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	335, 634
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	60, 310, 325, 533
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	3 cut(s)	113, 434, 539
TspDTI	ATGAA	2 cut(s)	496, 598
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	251, 615
XapI	RAATTY	2 cut(s)	325, 533
XceI	RCATGY	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	166
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.