Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001395

Physical Location & Seq

Genomic Coordinates Forward (+)

41322806 .. 41323336

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAAAGGTCCCTATACTTGTTCTTGTTTCTGTTCTCCTTTTGGTGCCAACGAAAGAATCGCTGCGAGAACCCAAGATGGATCGAGAGGACTGGGGCTATGTTGAAGTCCGACCCAAAGCACACATGTTCGGTGGCTTTATAGAAGTCCTAACGAGTGGAGGATCCCTCAAAGCCATGGCCAATTATTCTCTCGGCTCCAAGGTGGACCCGGAGGTTCGGGAGTTGGGATTGGGGAACTTTGAAGAGGTTGGGCCATTGGACACCAATTTGAAGCCAAGGAATTCAACGTGGTTGCAAAAGGCATATCTTTTATTTGTGGATAACCCGGTTGGGACCGGATTCGGTTTTGTGGAGGACAACGCTCTGTTTGTGAAAAATGATGTGGAGGCAGCCATTGATTTGACAACATTACCGAAAGAGCTATTCAACGAAATGAGAGCCTCCGGAAGAGTCCTCTGTTCATTGTGGCGAGTCTTATGGAGGCAAATTTGCAGCGACTCTTGGACTTTCAACTATAAAAGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

176

Amino Acids

19.88

Weight (kDa)

5.48

Isoelectric Point (pI)

26.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	79 - 143	2.1e-09	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27920 AT2G27920 AT2G27920
fragaria_vesca	FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390 FvH4_3g30390
malus_domestica	MD03G1129600.v1.1 MD11G1151400.v1.1
prunus_persica	Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1 Prupe.6G114600_v2.0.a1
pyrus_communis	pycom11g12340 pycom11g12350
rosa_chinensis	RchiOBHm_Chr1g0316781 RchiOBHm_Chr2g0132211 RchiOBHm_Chr5g0056341 RchiOBHm_Chr5g0056351
rosa_laevigata	RLG00000035090 RLG00000035093
rosa_multiflora	Rmu_sc0000317.1_g000012 Rmu_sc0000317.1_g000016 Rmu_sc0007698.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023950 Rroxscaffold_1G00023960 Rroxscaffold_1G00027560 Rroxscaffold_1G00027580 Rroxscaffold_7G00197280
rosa_rugosa	Rorug05G0299100
rosa_samantha	Rh1AG023900 Rh1DG125800 Rh2BG362400 Rh2BG531300 Rh2DG540300 Rh4AG122800 Rh5AG369800 Rh5AG369900 Rh5BG380800 Rh5BG380900 Rh5CG404200 Rh5DG394000 Rh5DG394200 Rh6CG181900 Rh6DG173200
rosa_wichuraiana	Rw0G012600 Rw0G012610 Rw2G031010 Rw4G017330 Rw6G009020 Rw7G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	446
AclWI	GGATC	3 cut(s)	90, 159, 172
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	283, 489
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	6 cut(s)	107, 245, 274, 288, 430, 514
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
AlwI	GGATC	3 cut(s)	90, 159, 172
Aor13HI	TCCGGA	1 cut(s)	446
AoxI	GGCC	2 cut(s)	180, 254
ApeKI	GCWGC	3 cut(s)	64, 392, 495
ApoI	RAATTY	2 cut(s)	283, 489
AspS9I	GGNCC	4 cut(s)	10, 208, 254, 336
AsuC2I	CCSGG	2 cut(s)	212, 329
AvaII	GGWCC	3 cut(s)	10, 208, 336
BalI	TGGCCA	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	51, 404, 507
BccI	CCATC	1 cut(s)	73
BcnI	CCSGG	2 cut(s)	212, 329
BisI	GCNGC	3 cut(s)	65, 393, 496
BlsI	GCNGC	3 cut(s)	66, 394, 497
Bme1390I	CCNGG	2 cut(s)	212, 329
Bme18I	GGWCC	3 cut(s)	10, 208, 336
BmgT120I	GGNCC	4 cut(s)	10, 208, 254, 336
BmiI	GGNNCC	6 cut(s)	12, 48, 166, 199, 210, 337
BmrFI	CCNGG	2 cut(s)	212, 329
BmrI	ACTGGG	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpuMI	CCSGG	2 cut(s)	212, 329
BsaJI	CCNNGG	3 cut(s)	177, 201, 278
BsaWI	WCCGGW	2 cut(s)	338, 446
Bse1I	ACTGG	1 cut(s)	98
BseAI	TCCGGA	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	177, 201, 278
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	51, 404, 507
BshFI	GGCC	2 cut(s)	182, 256
BshNI	GGYRCC	1 cut(s)	46
BsiSI	CCGG	4 cut(s)	212, 329, 339, 447
BslFI	GGGAC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	182, 256
Bsp13I	TCCGGA	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	82, 164
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	2 cut(s)	182, 256
BspEI	TCCGGA	1 cut(s)	446
BspLI	GGNNCC	6 cut(s)	12, 48, 166, 199, 210, 337
BspPI	GGATC	3 cut(s)	90, 159, 172
BspT107I	GGYRCC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	177, 201, 278
BssMI	GATC	2 cut(s)	82, 164
BssT1I	CCWWGG	3 cut(s)	177, 201, 278
Bst6I	CTCTTC	2 cut(s)	240, 445
BstDSI	CCRYGG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	85, 167
BstMBI	GATC	2 cut(s)	82, 164
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	210, 327
BstV1I	GCAGC	3 cut(s)	51, 404, 507
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	182, 256
BtgI	CCRYGG	1 cut(s)	177
Cfr13I	GGNCC	4 cut(s)	10, 208, 254, 336
CviAII	CATG	2 cut(s)	127, 178
DpnI	GATC	2 cut(s)	84, 166
DpnII	GATC	2 cut(s)	82, 164
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	240, 445
EarI	CTCTTC	2 cut(s)	240, 445
Eco130I	CCWWGG	3 cut(s)	177, 201, 278
Eco47I	GGWCC	3 cut(s)	10, 208, 336
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	3 cut(s)	177, 201, 278
ErhI	CCWWGG	3 cut(s)	177, 201, 278
FaeI	CATG	2 cut(s)	130, 181
FaiI	YATR	8 cut(s)	17, 102, 128, 143, 179, 307, 481, 519
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	126, 177
Fnu4HI	GCNGC	3 cut(s)	65, 393, 496
Fsp4HI	GCNGC	3 cut(s)	65, 393, 496
GluI	GCNGC	3 cut(s)	65, 393, 496
HaeIII	GGCC	2 cut(s)	182, 256
HapII	CCGG	4 cut(s)	212, 329, 339, 447
Hin1II	CATG	2 cut(s)	130, 181
HinfI	GANTC	5 cut(s)	59, 342, 453, 474, 500
HpaII	CCGG	4 cut(s)	212, 329, 339, 447
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	86, 221, 447
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	298, 495
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	130, 181
Kpn2I	TCCGGA	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	82, 164
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	5 cut(s)	79, 225, 342, 352, 460
Lsp1109I	GCAGC	3 cut(s)	51, 404, 507
MaeII	ACGT	1 cut(s)	290
MalI	GATC	2 cut(s)	84, 166
MboI	GATC	2 cut(s)	82, 164
MboII	GAAGA	2 cut(s)	257, 462
MflI	RGATCY	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	184, 268, 283, 489
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	3 cut(s)	462, 483, 494
MmeI	TCCRAC	1 cut(s)	136
Mox20I	TGGCCA	1 cut(s)	182
MroI	TCCGGA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	4 cut(s)	212, 329, 339, 447
MspR9I	CCNGG	2 cut(s)	212, 329
NciI	CCSGG	2 cut(s)	212, 329
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	82, 164
NlaIII	CATG	2 cut(s)	130, 181
NlaIV	GGNNCC	6 cut(s)	12, 48, 166, 199, 210, 337
NmeAIII	GCCGAG	1 cut(s)	174
NspI	RCATGY	1 cut(s)	130
PciI	ACATGT	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	59, 342
PkrI	GCNGC	3 cut(s)	66, 394, 497
PleI	GAGTC	3 cut(s)	461, 482, 494
PpsI	GAGTC	3 cut(s)	461, 482, 494
PpuMI	RGGWCCY	1 cut(s)	10
PscI	ACATGT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	10
PspN4I	GGNNCC	6 cut(s)	12, 48, 166, 199, 210, 337
PspPI	GGNCC	4 cut(s)	10, 208, 254, 336
PspPPI	RGGWCCY	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	164
SatI	GCNGC	3 cut(s)	65, 393, 496
Sau3AI	GATC	2 cut(s)	82, 164
Sau96I	GGNCC	4 cut(s)	10, 208, 254, 336
SchI	GAGTC	3 cut(s)	462, 483, 494
ScrFI	CCNGG	2 cut(s)	212, 329
SetI	ASST	6 cut(s)	12, 207, 219, 252, 293, 426
SinI	GGWCC	3 cut(s)	10, 208, 336
Sse9I	AATT	4 cut(s)	184, 268, 283, 489
StyD4I	CCNGG	2 cut(s)	210, 327
StyI	CCWWGG	3 cut(s)	177, 201, 278
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	184, 268, 283, 489
TfiI	GAWTC	2 cut(s)	59, 342
TseI	GCWGC	3 cut(s)	64, 392, 495
TspDTI	ATGAA	1 cut(s)	453
VpaK11BI	GGWCC	3 cut(s)	10, 208, 336
XapI	RAATTY	2 cut(s)	283, 489
XceI	RCATGY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.