Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

14723013 .. 14725684

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCTGTACATGTCAAGGAAGAACCTGTGCTTGTTCCAAACTGCGATGTCGAGAATACAGAGCTTGCAGTTTTCAATGGAAATGGAGAAAGTGAGCTTGAGAATTTTGGGACTTGCGTAGATGAGATAACAGATAGAGTGAATCAGCTTGAGCAAAAAGTTGTGGAGGTCGAACACTTTTACTCTACAAAAGATGGAGCTGCTCAAACTAACACTTCTAAGAGTAACTCGGGCGGGAAGAAGATCGCTATTTCTCAACCAAACAACTCGAAGGGTAACTCGGCCGGGAAAGAAAAATCAAAGGGAAAACATGTTTCCAGCCCTGACCTTATGCGTCAATTTGCAACAATGTTTCGTCAGATTGCTCAACATAAATGGGCATGGCCGTTCTTGGAGCCTGTTGATGTTAAAGGACTTGGACTACATGATTATTACAAGGTTATAGAGAAGCCAATGGACTTGGGAACAATTAAAAAAAAAATGGAGAGTTCGGAGTATAGCAATGTCAGGGAGATATATGCCGATGTTAGACTAGTTTTCAAGAACGCGATGAGATACAATGAAGAAAAAGAAGATGTTTATGTGATGGCTGAATCTCTTCTGGAGAAATTTGAGGAGAAATGGCTCCTGATAATGCCTAAACTTGTGGAGGAGGAAAAGAAACAAGTAGACGAAGAAGCGGAGAAGCATGCCAATAAGCAGCTTACAATGGAGGCTGCACAAGCGGAAATGGCTAGGGATTTAAGCAACGAACTATATGAGATTGATCTGCAGCTGGAGAAACTCCGGGAATCAGTAGTTCAGAGATGCAGAAAACTGTCCACTCAAGAAAAGAAAGGACTTTCTGCAGCTCTAGGTCGTCTCTCACCTGAGGATCTGTCTAAGGCGTTAAAAATGGTTTCAGAGAGCAACCCGAGTTTCCCGGCTGGAGCACCAGAAGTCGAGCTTGACATTGATGTTCAGACTGACGTTACATTGTGGAGACTGAAGGTGTTTGTGCAAGAAGCATTGAAAGCAGCTAACAAAAGCTCTGGAGGAACAAACGCTCAAAACAATAACAATACTGGAACTGGAGAGATCAACAAGAACAATGCAAAAAGACGGAGAGAGATCTCTGATGCAATCAATAAAGCTTCAATTAAAAGAGCTAAGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

386

Amino Acids

43.44

Weight (kDa)

6.04

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	116 - 198	2.5e-23	Bromodomain
BET	PF17035	273 - 334	1.6e-15	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	669
AccII	CGCG	1 cut(s)	548
AciI	CCGC	3 cut(s)	234, 680, 725
AclWI	GGATC	1 cut(s)	882
AcoI	YGGCCR	2 cut(s)	282, 383
AcsI	RAATTY	2 cut(s)	103, 608
AcuI	CTGAAG	1 cut(s)	1007
AfaI	GTAC	1 cut(s)	9
AflIII	ACRYGT	2 cut(s)	10, 310
AgsI	TTSAA	4 cut(s)	76, 541, 1012, 1137
AhlI	ACTAGT	1 cut(s)	532
Alw21I	GWGCWC	1 cut(s)	934
Alw26I	GTCTC	2 cut(s)	866, 976
AlwI	GGATC	1 cut(s)	882
Ama87I	CYCGRG	2 cut(s)	229, 913
AoxI	GGCC	2 cut(s)	282, 383
ApeKI	GCWGC	6 cut(s)	200, 700, 716, 772, 848, 1016
ApoI	RAATTY	2 cut(s)	103, 608
Asp700I	GAANNNNTTC	1 cut(s)	597
AsuC2I	CCSGG	3 cut(s)	286, 788, 923
AsuHPI	GGTGA	1 cut(s)	858
AvaI	CYCGRG	2 cut(s)	229, 913
AxyI	CCTNAGG	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	934
BbvI	GCAGC	6 cut(s)	187, 703, 712, 784, 860, 1028
BccI	CCATC	2 cut(s)	188, 580
BceAI	ACGGC	1 cut(s)	370
BcnI	CCSGG	3 cut(s)	286, 788, 923
BcoDI	GTCTC	2 cut(s)	866, 976
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	3 cut(s)	533, 735, 854
BfmI	CTRYAG	2 cut(s)	770, 846
BglII	AGATCT	1 cut(s)	1110
BisI	GCNGC	6 cut(s)	201, 701, 717, 773, 849, 1017
BlsI	GCNGC	6 cut(s)	202, 702, 718, 774, 850, 1018
Bme1390I	CCNGG	3 cut(s)	286, 788, 923
BmeT110I	CYCGRG	2 cut(s)	229, 913
BmiI	GGNNCC	2 cut(s)	396, 626
BmrFI	CCNGG	3 cut(s)	286, 788, 923
BmsI	GCATC	2 cut(s)	797, 1108
BpmI	CTGGAG	5 cut(s)	623, 797, 948, 1053, 1092
BpuEI	CTTGAG	3 cut(s)	119, 170, 810
BpuMI	CCSGG	3 cut(s)	286, 788, 923
Bse1I	ACTGG	2 cut(s)	1069, 1075
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	861
BseNI	ACTGG	2 cut(s)	1069, 1075
BseRI	GAGGAG	2 cut(s)	629, 665
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	6 cut(s)	187, 703, 712, 784, 860, 1028
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	284, 385
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	934
BsiHKCI	CYCGRG	2 cut(s)	229, 913
BsiSI	CCGG	3 cut(s)	285, 787, 923
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	866, 976
BsmBI	CGTCTC	1 cut(s)	866
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	284, 385
BsoBI	CYCGRG	2 cut(s)	229, 913
Bsp1286I	GDGCHC	1 cut(s)	934
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	5 cut(s)	243, 766, 874, 1077, 1110
BspACI	CCGC	3 cut(s)	234, 680, 725
BspANI	GGCC	2 cut(s)	284, 385
BspCNI	CTCAG	1 cut(s)	862
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	2 cut(s)	396, 626
BspMAI	CTGCAG	2 cut(s)	774, 850
BspPI	GGATC	1 cut(s)	882
BsrDI	GCAATG	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	1069, 1075
BssMI	GATC	5 cut(s)	243, 766, 874, 1077, 1110
Bst4CI	ACNGT	1 cut(s)	819
Bst6I	CTCTTC	1 cut(s)	603
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	66, 690
BstDEI	CTNAG	4 cut(s)	219, 870, 882, 1149
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	5 cut(s)	246, 769, 877, 1080, 1113
BstMAI	GTCTC	2 cut(s)	866, 976
BstMBI	GATC	5 cut(s)	243, 766, 874, 1077, 1110
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	4 cut(s)	722, 731, 1013, 1154
BstNSI	RCATGY	3 cut(s)	14, 314, 692
BstSCI	CCNGG	3 cut(s)	284, 786, 921
BstSFI	CTRYAG	2 cut(s)	770, 846
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	6 cut(s)	187, 703, 712, 784, 860, 1028
BstX2I	RGATCY	2 cut(s)	874, 1110
BstYI	RGATCY	2 cut(s)	874, 1110
BstZI	CGGCCG	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	2 cut(s)	284, 385
BtgZI	GCGATG	2 cut(s)	60, 563
Cac8I	GCNNGC	2 cut(s)	66, 690
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	5 cut(s)	11, 311, 381, 425, 689
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	4 cut(s)	219, 870, 882, 1149
DpnI	GATC	5 cut(s)	245, 768, 876, 1079, 1112
DpnII	GATC	5 cut(s)	243, 766, 874, 1077, 1110
EaeI	YGGCCR	2 cut(s)	282, 383
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
EclXI	CGGCCG	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	1007
Eco81I	CCTNAGG	1 cut(s)	870
Eco88I	CYCGRG	2 cut(s)	229, 913
Esp3I	CGTCTC	1 cut(s)	866
FaeI	CATG	5 cut(s)	14, 314, 384, 428, 692
FalI	AAGNNNNNCTT	2 cut(s)	930, 962
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	5 cut(s)	10, 310, 380, 424, 688
FauI	CCCGC	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	6 cut(s)	201, 701, 717, 773, 849, 1017
Fsp4HI	GCNGC	6 cut(s)	201, 701, 717, 773, 849, 1017
FspBI	CTAG	3 cut(s)	533, 735, 854
GluI	GCNGC	6 cut(s)	201, 701, 717, 773, 849, 1017
GsuI	CTGGAG	5 cut(s)	623, 797, 948, 1053, 1092
HaeIII	GGCC	2 cut(s)	284, 385
HapII	CCGG	3 cut(s)	285, 787, 923
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	5 cut(s)	14, 314, 384, 428, 692
HindIII	AAGCTT	2 cut(s)	1131, 1155
HinfI	GANTC	3 cut(s)	142, 593, 791
HpaII	CCGG	3 cut(s)	285, 787, 923
HphI	GGTGA	1 cut(s)	858
Hpy166II	GTNNAC	2 cut(s)	670, 822
Hpy188I	TCNGA	6 cut(s)	360, 493, 804, 904, 963, 1117
Hpy188III	TCNNGA	6 cut(s)	52, 541, 602, 628, 827, 1032
Hpy8I	GTNNAC	2 cut(s)	670, 822
HpyAV	CCTTC	2 cut(s)	265, 982
HpyCH4III	ACNGT	1 cut(s)	819
HpyCH4IV	ACGT	1 cut(s)	969
HpyCH4V	TGCA	9 cut(s)	68, 344, 719, 772, 810, 848, 1000, 1094, 1121
HpyF10VI	GCNNNNNNNGC	4 cut(s)	722, 731, 1013, 1154
HpyF3I	CTNAG	4 cut(s)	219, 870, 882, 1149
HpySE526I	ACGT	1 cut(s)	969
Hsp92II	CATG	5 cut(s)	14, 314, 384, 428, 692
Kzo9I	GATC	5 cut(s)	243, 766, 874, 1077, 1110
LmnI	GCTCC	4 cut(s)	197, 394, 630, 929
Lsp1109I	GCAGC	6 cut(s)	187, 703, 712, 784, 860, 1028
LweI	GCATC	2 cut(s)	797, 1108
MaeI	CTAG	3 cut(s)	533, 735, 854
MaeII	ACGT	1 cut(s)	969
MaeIII	GTNAC	3 cut(s)	224, 275, 970
MalI	GATC	5 cut(s)	245, 768, 876, 1079, 1112
MboI	GATC	5 cut(s)	243, 766, 874, 1077, 1110
MboII	GAAGA	7 cut(s)	32, 250, 253, 575, 584, 590, 686
MflI	RGATCY	2 cut(s)	874, 1110
MhlI	GDGCHC	1 cut(s)	934
MluCI	AATT	5 cut(s)	103, 338, 468, 608, 1137
MnlI	CCTC	7 cut(s)	160, 607, 643, 646, 706, 865, 1028
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	5 cut(s)	408, 471, 743, 890, 1140
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	3 cut(s)	285, 787, 923
MspR9I	CCNGG	3 cut(s)	286, 788, 923
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	722, 731, 1013, 1154
NciI	CCSGG	3 cut(s)	286, 788, 923
NdeII	GATC	5 cut(s)	243, 766, 874, 1077, 1110
NlaIII	CATG	5 cut(s)	14, 314, 384, 428, 692
NlaIV	GGNNCC	2 cut(s)	396, 626
NmeAIII	GCCGAG	1 cut(s)	260
NspI	RCATGY	3 cut(s)	14, 314, 692
PaeI	GCATGC	1 cut(s)	692
PciI	ACATGT	2 cut(s)	10, 310
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	142, 593, 791
PfoI	TCCNGGA	1 cut(s)	786
PkrI	GCNGC	6 cut(s)	202, 702, 718, 774, 850, 1018
PscI	ACATGT	2 cut(s)	10, 310
PspN4I	GGNNCC	2 cut(s)	396, 626
PstI	CTGCAG	2 cut(s)	774, 850
PsuI	RGATCY	2 cut(s)	874, 1110
PvuII	CAGCTG	1 cut(s)	775
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	5 cut(s)	408, 471, 743, 890, 1140
SatI	GCNGC	6 cut(s)	201, 701, 717, 773, 849, 1017
Sau3AI	GATC	5 cut(s)	243, 766, 874, 1077, 1110
ScrFI	CCNGG	3 cut(s)	286, 788, 923
SduI	GDGCHC	1 cut(s)	934
SfaNI	GCATC	2 cut(s)	797, 1108
SfcI	CTRYAG	2 cut(s)	770, 846
SmlI	CTYRAG	3 cut(s)	98, 149, 825
SmoI	CTYRAG	3 cut(s)	98, 149, 825
SpeI	ACTAGT	1 cut(s)	532
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	5 cut(s)	103, 338, 468, 608, 1137
SsiI	CCGC	3 cut(s)	234, 680, 725
SspMI	CTAG	3 cut(s)	533, 735, 854
StyD4I	CCNGG	3 cut(s)	284, 786, 921
TaaI	ACNGT	1 cut(s)	819
TaiI	ACGT	1 cut(s)	972
TaqI	TCGA	4 cut(s)	51, 171, 269, 942
TasI	AATT	5 cut(s)	103, 338, 468, 608, 1137
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	142, 593, 791
Tru1I	TTAA	5 cut(s)	408, 471, 743, 890, 1140
Tru9I	TTAA	5 cut(s)	408, 471, 743, 890, 1140
TseI	GCWGC	6 cut(s)	200, 700, 716, 772, 848, 1016
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	1 cut(s)	1117
XapI	RAATTY	2 cut(s)	103, 608
XceI	RCATGY	3 cut(s)	14, 314, 692
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	533, 735, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.