Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

20662896 .. 20663234

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1172000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAAGAGCTTATGCGCCAATTTTCTGTAATGTTCTGTCAGATCACTAAGCATGACTGGGCGTGGCCCTTTATGGTTCCTGTAGATGTTGAAGGTCTGGGATTGCATGACTATTATCAAGTCATTGAGAAGCCCATGGACCTTGGTACCATAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGGAAGCCAAGGATGGTAGTGAGTATAAGAATGTCGGAGAGATATATGCTGATGTGAGGCTGGTTTTCAAGAATGCAATGAAATATAATGATGAAGGTGAGGATGTCTATGTGATGGCCCAATCGTTGTTGCAAAATTTCGAAAAAAAAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

113

Amino Acids

13.22

Weight (kDa)

8.56

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	13 - 101	8.4e-19	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	92, 250
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AoxI	GGCC	2 cut(s)	65, 297
ApoI	RAATTY	1 cut(s)	316
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	66, 139, 298
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	139
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BanI	GGYRCC	1 cut(s)	146
BccI	CCATC	2 cut(s)	188, 289
BfmI	CTRYAG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	66, 139, 298
BmiI	GGNNCC	2 cut(s)	78, 148
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	135, 142, 189
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	135, 142, 189
BseGI	GGATG	2 cut(s)	199, 289
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	67, 299
BshNI	GGYRCC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	67, 299
Bsp119I	TTCGAA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	2 cut(s)	67, 299
BspLI	GGNNCC	2 cut(s)	78, 148
BspT104I	TTCGAA	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	135, 142, 189
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	3 cut(s)	135, 142, 189
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	199, 289
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	67, 299
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	199, 289
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	66, 139, 298
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	53, 107, 136
CviJI	RGCY	7 cut(s)	10, 67, 133, 188, 241, 299, 336
CviKI_1	RGCY	7 cut(s)	10, 67, 133, 188, 241, 299, 336
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco130I	CCWWGG	3 cut(s)	135, 142, 189
Eco47I	GGWCC	1 cut(s)	139
EcoT14I	CCWWGG	3 cut(s)	135, 142, 189
ErhI	CCWWGG	3 cut(s)	135, 142, 189
FaeI	CATG	3 cut(s)	56, 110, 139
FatI	CATG	3 cut(s)	52, 106, 135
FokI	GGATG	2 cut(s)	206, 296
GlaI	GCGC	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	67, 299
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	56, 110, 139
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	42, 218
Hpy188III	TCNNGA	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	86, 269
HpyCH4V	TGCA	4 cut(s)	4, 106, 257, 313
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	56, 110, 139
HspAI	GCGC	1 cut(s)	16
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	4 cut(s)	43, 83, 93, 227
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MluCI	AATT	2 cut(s)	20, 316
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	231, 274
Mva1269I	GAATGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	56, 110, 139
NlaIV	GGNNCC	2 cut(s)	78, 148
NspV	TTCGAA	1 cut(s)	321
PctI	GAATGC	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	78, 148
PspPI	GGNCC	3 cut(s)	66, 139, 298
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	3 cut(s)	66, 139, 298
SetI	ASST	4 cut(s)	12, 97, 144, 280
SfcI	CTRYAG	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	2 cut(s)	20, 316
StyI	CCWWGG	3 cut(s)	135, 142, 189
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	20, 316
TspDTI	ATGAA	2 cut(s)	275, 288
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.