Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

6567732 .. 6572181

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G121200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAGCCAATAAGTTCATCAAACCCAGATCTTAGAAAAGTTGCTGTTGCTGCTGAAGTGGAGGGGTTTGGGTGTTCTGTTGATGAAATTTCTGCAAAGGTTGATACGCTTGAGAAAAGAGTGAACGAGGTTGAACGATTTTACTTGACTACAGGTAGTCCGCAACTAACCAATTCAAAAGGTAGCTCAATTGTGAAGGATAAACAGTTAAATCTTCTTAAGAAGCAGCAGCAAGATGCATCACGTAGGGAAGTCACTGCTACAAAGAGAATGCAAGAGCTCATGCGGCAATTTGCCTCAATATTCCGTCAGATCACTCAGCACGAATGGGCATGGCCCTTCAAGGAGCCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCTATGGACTTTGGAACCATAAAAAATAAAATGGAAGCTAAGGATGGTACTGCCTATAAGAATGTTAGAGAAATATATGCTGATGTGAGGCTGGTATTTAAGAATGCAATGAAATATAATGATGACAAAGATGATGTCCACGTGATGGCCAAAACATTGTTGGAAAAGTTTGAAGAAAAATGGCTAAAGCTTTTGCCAAAAGTTGTTGAAGAGGAAAAAAGACGAGTAGATGAGGAAGCAGAGGCACGACTACACACGAAACTTGCCCAGGAGGCTGCTTATGCCAGCATGGCTAAGGATCTAAGCACTGAGCTTGTAGAGATTGATCTGTATTTGAAGGACCTCAGAGAAATGGTGGTTCAGAAGTGCAGGAAAATGTCATCTGGTGATAAGAGAAAACTTGGGACTGCTCTCACCCATTTATCTCCTGACGATCTCAGCAAGGCTCTGGAAATCGTCGCTCAGAATAACCCCAGCTTCCAACCAAGTGCGCAAGAAGTGGATCTTGACATTGATGCTCAGAGTGAGTGCACATTATGGAGGTTAAAAGTTTTTGTTAAGGAGGCACTAAAAGTTCAGGGAAAAAGTTCTGAAGGCATTGCCGGCAACAAAGTTACAGCCTCCAAACGAAACAGGGAGATTTCTGACGCTGTTCCCAAGACTAACGCAAAAAGGACTAAAAAGCTCTCTTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

367

Amino Acids

41.65

Weight (kDa)

8.41

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	894
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	2 cut(s)	161, 286
AclWI	GGATC	2 cut(s)	708, 912
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	2 cut(s)	75, 1014
AcvI	CACGTG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	547
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	7 cut(s)	134, 177, 343, 362, 575, 611, 739
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	7 cut(s)	186, 280, 440, 592, 715, 879, 1087
AluI	AGCT	7 cut(s)	186, 280, 440, 592, 715, 879, 1087
Alw21I	GWGCWC	2 cut(s)	282, 935
Alw44I	GTGCAC	1 cut(s)	931
AlwI	GGATC	2 cut(s)	708, 912
AoxI	GGCC	2 cut(s)	335, 549
ApaLI	GTGCAC	1 cut(s)	931
ApeKI	GCWGC	4 cut(s)	50, 226, 229, 677
ApoI	RAATTY	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	522, 554
Asp700I	GAANNNNTTC	1 cut(s)	988
AspLEI	GCGC	1 cut(s)	895
AspS9I	GGNCC	2 cut(s)	336, 742
AsuHPI	GGTGA	2 cut(s)	800, 808
AvaII	GGWCC	1 cut(s)	742
BaeGI	GKGCMC	1 cut(s)	935
BalI	TGGCCA	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	544
Bbv12I	GWGCWC	2 cut(s)	282, 935
BbvI	GCAGC	4 cut(s)	37, 238, 241, 664
BccI	CCATC	2 cut(s)	440, 541
BciT130I	CCWGG	1 cut(s)	671
BfmI	CTRYAG	2 cut(s)	150, 351
BfrI	CTTAAG	1 cut(s)	218
BglI	GCCNNNNNGGC	2 cut(s)	674, 692
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	5 cut(s)	51, 227, 230, 287, 678
BlsI	GCNGC	5 cut(s)	52, 228, 231, 288, 679
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	1 cut(s)	742
BmgT120I	GGNCC	2 cut(s)	336, 742
BmiI	GGNNCC	3 cut(s)	6, 348, 418
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	3 cut(s)	226, 248, 907
Bpu10I	CCTNAGC	2 cut(s)	441, 696
BpuEI	CTTGAG	1 cut(s)	131
BsaAI	YACGTR	2 cut(s)	245, 544
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse118I	RCCGGY	1 cut(s)	1004
Bse3DI	GCAATG	2 cut(s)	516, 999
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMI	GCAATG	2 cut(s)	516, 999
BseMII	CTCAG	6 cut(s)	332, 702, 760, 853, 878, 935
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	4 cut(s)	37, 238, 241, 664
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	790
BshFI	GGCC	2 cut(s)	337, 551
BsiHKAI	GWGCWC	2 cut(s)	282, 935
BsiSI	CCGG	1 cut(s)	1005
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	820
BsmI	GAATGC	2 cut(s)	276, 511
BsnI	GGCC	2 cut(s)	337, 551
Bsp1286I	GDGCHC	2 cut(s)	282, 935
Bsp143I	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
BspACI	CCGC	2 cut(s)	161, 286
BspANI	GGCC	2 cut(s)	337, 551
BspCNI	CTCAG	6 cut(s)	331, 703, 759, 852, 877, 934
BspLI	GGNNCC	3 cut(s)	6, 348, 418
BspPI	GGATC	2 cut(s)	708, 912
BspTI	CTTAAG	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	516, 999
BsrFI	RCCGGY	1 cut(s)	1004
BssAI	RCCGGY	1 cut(s)	1004
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	218
BstBAI	YACGTR	2 cut(s)	245, 544
BstC8I	GCNNGC	2 cut(s)	688, 1006
BstF5I	GGATG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	6 cut(s)	31, 315, 703, 730, 838, 907
BstMBI	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 286, 674, 683, 692, 1005
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	2 cut(s)	150, 351
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	4 cut(s)	37, 238, 241, 664
BstX2I	RGATCY	3 cut(s)	28, 700, 904
BstYI	RGATCY	3 cut(s)	28, 700, 904
BsuRI	GGCC	2 cut(s)	337, 551
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 708
Cac8I	GCNNGC	2 cut(s)	688, 1006
CfoI	GCGC	1 cut(s)	895
Cfr10I	RCCGGY	1 cut(s)	1004
Cfr13I	GGNCC	2 cut(s)	336, 742
CseI	GACGC	1 cut(s)	1058
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	4 cut(s)	283, 333, 377, 691
CviQI	GTAC	1 cut(s)	450
DpnI	GATC	6 cut(s)	30, 314, 702, 729, 837, 906
DpnII	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	742
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	75, 1014
Eco72I	CACGTG	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	669
EcoT22I	ATGCAT	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	4 cut(s)	286, 336, 380, 694
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	4 cut(s)	282, 332, 376, 690
Fnu4HI	GCNGC	5 cut(s)	51, 227, 230, 287, 678
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	5 cut(s)	51, 227, 230, 287, 678
FspI	TGCGCA	1 cut(s)	894
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	5 cut(s)	51, 227, 230, 287, 678
GsaI	CCCAGC	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	337, 551
HapII	CCGG	1 cut(s)	1005
HgaI	GACGC	1 cut(s)	1058
HhaI	GCGC	1 cut(s)	895
Hin1II	CATG	4 cut(s)	286, 336, 380, 694
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HindIII	AAGCTT	1 cut(s)	590
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	2 cut(s)	800, 808
Hpy166II	GTNNAC	3 cut(s)	124, 541, 933
Hpy188I	TCNGA	7 cut(s)	312, 749, 765, 867, 924, 994, 1048
Hpy188III	TCNNGA	3 cut(s)	830, 851, 908
Hpy8I	GTNNAC	3 cut(s)	124, 541, 933
Hpy99I	CGWCG	1 cut(s)	863
HpyAV	CCTTC	4 cut(s)	190, 349, 733, 989
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	2 cut(s)	244, 543
HpyCH4V	TGCA	7 cut(s)	95, 239, 274, 376, 509, 771, 933
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 286, 674, 683, 692, 1005
HpySE526I	ACGT	2 cut(s)	244, 543
Hsp92II	CATG	4 cut(s)	286, 336, 380, 694
HspAI	GCGC	1 cut(s)	893
KroI	GCCGGC	1 cut(s)	1004
KroNI	GCCGGC	1 cut(s)	1006
Kzo9I	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
LmnI	GCTCC	2 cut(s)	4, 346
Lsp1109I	GCAGC	4 cut(s)	37, 238, 241, 664
LweI	GCATC	3 cut(s)	226, 248, 907
MaeII	ACGT	2 cut(s)	244, 543
MaeIII	GTNAC	2 cut(s)	253, 1015
MalI	GATC	6 cut(s)	30, 314, 702, 729, 837, 906
MboI	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
MboII	GAAGA	3 cut(s)	206, 587, 623
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	3 cut(s)	28, 700, 904
MhlI	GDGCHC	2 cut(s)	282, 935
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	87, 172, 189, 290
MluNI	TGGCCA	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	543, 907
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	241
MroNI	GCCGGC	1 cut(s)	1004
MroXI	GAANNNNTTC	1 cut(s)	988
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	5 cut(s)	209, 219, 501, 947, 960
Msp20I	TGGCCA	1 cut(s)	551
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	1005
MspR9I	CCNGG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	2 cut(s)	276, 511
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	6 cut(s)	50, 286, 674, 683, 692, 1005
NaeI	GCCGGC	1 cut(s)	1006
NdeII	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
NgoMIV	GCCGGC	1 cut(s)	1004
NlaIII	CATG	4 cut(s)	286, 336, 380, 694
NlaIV	GGNNCC	3 cut(s)	6, 348, 418
NmuCI	GTSAC	1 cut(s)	253
NsbI	TGCGCA	1 cut(s)	894
NsiI	ATGCAT	1 cut(s)	241
PctI	GAATGC	2 cut(s)	276, 511
PdiI	GCCGGC	1 cut(s)	1006
PdmI	GAANNNNTTC	1 cut(s)	988
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	5 cut(s)	52, 228, 231, 288, 679
PmaCI	CACGTG	1 cut(s)	544
PmlI	CACGTG	1 cut(s)	544
Ppu21I	YACGTR	2 cut(s)	245, 544
PpuMI	RGGWCCY	1 cut(s)	742
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	669
PspCI	CACGTG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	6, 348, 418
PspPI	GGNCC	2 cut(s)	336, 742
PspPPI	RGGWCCY	1 cut(s)	742
PsuI	RGATCY	3 cut(s)	28, 700, 904
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	5 cut(s)	209, 219, 501, 947, 960
SatI	GCNGC	5 cut(s)	51, 227, 230, 287, 678
Sau3AI	GATC	6 cut(s)	28, 312, 700, 727, 835, 904
Sau96I	GGNCC	2 cut(s)	336, 742
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	2 cut(s)	282, 935
SfaNI	GCATC	3 cut(s)	226, 248, 907
SfcI	CTRYAG	2 cut(s)	150, 351
SinI	GGWCC	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	110, 218
SmoI	CTYRAG	2 cut(s)	110, 218
Sse9I	AATT	4 cut(s)	87, 172, 189, 290
SsiI	CCGC	2 cut(s)	161, 286
SspI	AATATT	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	669
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	2 cut(s)	247, 546
TasI	AATT	4 cut(s)	87, 172, 189, 290
TauI	GCSGC	1 cut(s)	289
Tru1I	TTAA	5 cut(s)	209, 219, 501, 947, 960
Tru9I	TTAA	5 cut(s)	209, 219, 501, 947, 960
TscAI	CASTG	2 cut(s)	262, 715
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	50, 226, 229, 677
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	6, 99, 527
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	262, 715
Van91I	CCANNNNNTGG	1 cut(s)	547
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	931
VpaK11BI	GGWCC	1 cut(s)	742
XapI	RAATTY	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	988
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.