FvH4_7g19980

Transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16350056 .. 16353366
3311 bp
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UTR
Exon/CDS
Intron
FvH4_7g19980.t6

Sequence Viewer

Length: 1401 bp
ATGGTTTCTCAAGTGGTGAAGATAGCACGCTCACTTTGGCTTGATGATCGACCTTCATTCGATCTGTTTAAGAGGGTAAGAAAAAAAAAGGAGGGGAAATCGAGCGAGGGTGTGGAACAAAAGCCGACGCCGTTATACAACTTCTCAAAGCTTCACAAGGCAGCACAGATTTTCCCACACAGACAAGCTCCCCTGCTCAAACCCAATCTCACATCCTCCGTCGTCGTTTCGATGGATCAAATGGAGGCGCCAATTGTAGATGTCAGCCATGTTGGTGCTATAGATTTTACTGCCAATGGTGCTGAAGCCGAGTCATTCAAGCACCGCGTTGATGATATTTTCGTTCAGGTTGATAAGCTTGAGCAGAGAGTGAATGAGATAGAGCAGTTTTACTCGAGCGCGAGTAAGAAGCAGGGGAATGCAAGTAAGAGTGGTTCAGGTGTGAAGGATAAAGAGAAGCATGTACCGAGTATGAAGAAGCAGCAGCAAGAGGCTGCATTGAGGGAGGCAGCTGCTGCAAAGAGAATGCAAGAACTTATGCGTCAATTTGGCACGATATTGCGTCAAATTACACAGCACAAGTGGGCATGGCCCTTTTTGCAACCTGTAGATGTAGAAGGTCTTGGTTTACATGATTATTATGAGGTCATTGACAAGCCAATGGATTTCAGTACGATTAAAAATCAAATGGAGGCCAAAGATGGTACTGGGTATAAAAATGTACGCGAGATATGTTCTGATGTCCGGTTAGTTTTCAAAAACGCGATGAAGTATAATGAGGAGAGAAGCGATGTTCATGTCATGGCCAAAACTTTGATGGCAAAATTTGAGGAAAAGTGGCTGCAGCTTCTACCGAAAGTTACTGAAGAGGAAAAGAGGCTAGAAGAGGAAGAGGCAGAAGCACAGTTAAATATGCAACTTGCTGAAGAGGCTGCTCATGCTAAAATGGCTAGAGACTTAAGCAATGAGCTTTATGAGGTTGATATGCATTTGGAAGAACTCCGAGAGATGGTTGTTCAAAAGTGCAGAAAAATGTCAACTGAAGAGAAGAGAAAGCTTGGGGTAGCCCTCAGCAGACTGTCCCCAGAGGATCTCAGCATGGCACTAGAGATTGTTGCACAAAGTAATCCAGGTTTTCAAGCTACTGCTGAAGAGGTGGACCTTGATATCGATGCGCAGACTGAATCTACCTTGTGGAGGTTGAAGTTTTTTGTGAAGGACACTTTAGAAGTCCAGGCCAAGAGCTCGGCAAGCTTAGGCGCCACCAACAATGACAACACCAACAACCACAACAGCGGTAACAAAACAAATAACATCAACAATGCTAACAATAAGCGAAAAAGAGAGATTTGTAATGCTATTGCCAAAACCAATAAAAAGAATAAAAAACCAGCCTCTTGA

Protein Analysis

467

Amino Acids

53.0

Weight (kDa)

8.15

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 108 - 193 1.2e-17 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1176
AccB1I GGYRCC 2 cut(s) 247, 1259
AccII CGCG 4 cut(s) 327, 401, 726, 764
AciI CCGC 2 cut(s) 325, 1296
AclWI GGATC 2 cut(s) 243, 1098
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 5 cut(s) 324, 885, 945, 1062, 1170
AcyI GRCGYC 3 cut(s) 128, 248, 1260
AfaI GTAC 4 cut(s) 465, 673, 706, 723
AfiI CCNNNNNNNGG 2 cut(s) 1009, 1197
AflII CTTAAG 1 cut(s) 958
AgsI TTSAA 5 cut(s) 319, 757, 1019, 1139, 1204
AjnI CCWGG 2 cut(s) 1129, 1233
Alw21I GWGCWC 1 cut(s) 1247
Alw26I GTCTC 1 cut(s) 948
AlwI GGATC 2 cut(s) 243, 1098
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 4 cut(s) 590, 693, 804, 1236
ApoI RAATTY 1 cut(s) 824
AspLEI GCGC 4 cut(s) 250, 401, 1177, 1262
AspS9I GGNCC 2 cut(s) 591, 1159
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 1 cut(s) 1159
BalI TGGCCA 1 cut(s) 806
BanI GGYRCC 2 cut(s) 247, 1259
BanII GRGCYC 1 cut(s) 1247
Bbv12I GWGCWC 1 cut(s) 1247
BbvCI CCTCAGC 1 cut(s) 1070
BccI CCATC 4 cut(s) 226, 695, 811, 1003
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 2 cut(s) 1131, 1235
BcoDI GTCTC 1 cut(s) 948
BfaI CTAG 3 cut(s) 881, 951, 1106
BfmI CTRYAG 3 cut(s) 279, 606, 842
BfoI RGCGCY 2 cut(s) 251, 1263
BfrI CTTAAG 1 cut(s) 958
Bme1390I CCNGG 2 cut(s) 1131, 1235
Bme18I GGWCC 1 cut(s) 1159
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 591, 1159
BmiI GGNNCC 2 cut(s) 249, 1261
BmrFI CCNGG 2 cut(s) 1131, 1235
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 1 cut(s) 1162
BmuI ACTGGG 1 cut(s) 717
Bpu10I CCTNAGC 2 cut(s) 1070, 1255
BpuEI CTTGAG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 1170
BsaHI GRCGYC 3 cut(s) 128, 248, 1260
BsaWI WCCGGW 1 cut(s) 744
Bsc4I CCNNNNNNNGG 2 cut(s) 1009, 1197
Bse1I ACTGG 1 cut(s) 712
Bse3DI GCAATG 1 cut(s) 970
BseBI CCWGG 2 cut(s) 1131, 1235
BseCI ATCGAT 1 cut(s) 1170
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 2 cut(s) 1009, 1197
BseMI GCAATG 1 cut(s) 970
BseMII CTCAG 2 cut(s) 1084, 1108
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 1 cut(s) 794
BsgI GTGCAG 1 cut(s) 1045
Bsh1236I CGCG 4 cut(s) 327, 401, 726, 764
BshFI GGCC 4 cut(s) 592, 695, 806, 1238
BshNI GGYRCC 2 cut(s) 247, 1259
BshVI ATCGAT 1 cut(s) 1170
BsiHKAI GWGCWC 1 cut(s) 1247
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 1 cut(s) 745
BslFI GGGAC 1 cut(s) 1066
BslI CCNNNNNNNGG 2 cut(s) 1009, 1197
BsmAI GTCTC 1 cut(s) 948
BsmFI GGGAC 1 cut(s) 1066
BsmI GAATGC 2 cut(s) 424, 531
BsnI GGCC 4 cut(s) 592, 695, 806, 1238
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 1247
Bsp143I GATC 4 cut(s) 46, 61, 235, 1090
BspACI CCGC 2 cut(s) 325, 1296
BspANI GGCC 4 cut(s) 592, 695, 806, 1238
BspCNI CTCAG 2 cut(s) 1083, 1107
BspDI ATCGAT 1 cut(s) 1170
BspFNI CGCG 4 cut(s) 327, 401, 726, 764
BspLI GGNNCC 2 cut(s) 249, 1261
BspMAI CTGCAG 1 cut(s) 846
BspPI GGATC 2 cut(s) 243, 1098
BspT107I GGYRCC 2 cut(s) 247, 1259
BspTI CTTAAG 1 cut(s) 958
BsrDI GCAATG 1 cut(s) 970
BsrI ACTGG 1 cut(s) 712
BssMI GATC 4 cut(s) 46, 61, 235, 1090
BssNI GRCGYC 3 cut(s) 128, 248, 1260
Bst2UI CCWGG 2 cut(s) 1131, 1235
Bst4CI ACNGT 2 cut(s) 906, 1080
Bst6I CTCTTC 7 cut(s) 861, 879, 885, 921, 1038, 1043, 1146
BstACI GRCGYC 3 cut(s) 128, 248, 1260
BstAFI CTTAAG 1 cut(s) 958
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 28, 1252
BstDEI CTNAG 3 cut(s) 1070, 1094, 1255
BstENI CCTNNNNNAGG 1 cut(s) 1195
BstF5I GGATG 1 cut(s) 212
BstFNI CGCG 4 cut(s) 327, 401, 726, 764
BstH2I RGCGCY 2 cut(s) 251, 1263
BstHHI GCGC 4 cut(s) 250, 401, 1177, 1262
BstKTI GATC 4 cut(s) 49, 64, 238, 1093
BstMAI GTCTC 1 cut(s) 948
BstMBI GATC 4 cut(s) 46, 61, 235, 1090
BstMWI GCNNNNNNNGC 7 cut(s) 299, 515, 598, 929, 938, 947, 1251
BstNI CCWGG 2 cut(s) 1131, 1235
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 1129, 1233
BstSFI CTRYAG 3 cut(s) 279, 606, 842
BstUI CGCG 4 cut(s) 327, 401, 726, 764
BstX2I RGATCY 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 1090
Bsu15I ATCGAT 1 cut(s) 1170
BsuRI GGCC 4 cut(s) 592, 695, 806, 1238
BsuTUI ATCGAT 1 cut(s) 1170
BtgZI GCGATG 2 cut(s) 779, 804
BtsCI GGATG 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 28, 1252
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 4 cut(s) 250, 401, 1177, 1262
Cfr13I GGNCC 2 cut(s) 591, 1159
ClaI ATCGAT 1 cut(s) 1170
CseI GACGC 3 cut(s) 136, 530, 551
Csp6I GTAC 4 cut(s) 464, 672, 705, 722
CviAII CATG 8 cut(s) 269, 461, 588, 632, 797, 802, 938, 1099
CviQI GTAC 4 cut(s) 464, 672, 705, 722
DdeI CTNAG 3 cut(s) 1070, 1094, 1255
DinI GGCGCC 2 cut(s) 249, 1261
DpnI GATC 4 cut(s) 48, 63, 237, 1092
DpnII GATC 4 cut(s) 46, 61, 235, 1090
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 7 cut(s) 861, 879, 885, 921, 1038, 1043, 1146
EarI CTCTTC 7 cut(s) 861, 879, 885, 921, 1038, 1043, 1146
Ecl136II GAGCTC 1 cut(s) 1245
Eco24I GRGCYC 1 cut(s) 1247
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 1 cut(s) 1159
Eco53kI GAGCTC 1 cut(s) 1245
Eco57I CTGAAG 5 cut(s) 324, 885, 945, 1062, 1170
Eco88I CYCGRG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 1245
EcoNI CCTNNNNNAGG 1 cut(s) 1195
EcoRII CCWGG 2 cut(s) 1129, 1233
EcoRV GATATC 1 cut(s) 1168
EcoT22I ATGCAT 1 cut(s) 990
EcoT38I GRGCYC 1 cut(s) 1247
EgeI GGCGCC 2 cut(s) 249, 1261
EheI GGCGCC 2 cut(s) 249, 1261
FaeI CATG 8 cut(s) 272, 464, 591, 635, 800, 805, 941, 1102
FaqI GGGAC 1 cut(s) 1066
FatI CATG 8 cut(s) 268, 460, 587, 631, 796, 801, 937, 1098
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 1247
FspBI CTAG 3 cut(s) 881, 951, 1106
FspI TGCGCA 1 cut(s) 1176
GlaI GCGC 4 cut(s) 249, 400, 1176, 1261
HaeII RGCGCY 2 cut(s) 251, 1263
HaeIII GGCC 4 cut(s) 592, 695, 806, 1238
HapII CCGG 1 cut(s) 745
HgaI GACGC 3 cut(s) 136, 530, 551
HhaI GCGC 4 cut(s) 250, 401, 1177, 1262
Hin1I GRCGYC 3 cut(s) 128, 248, 1260
Hin1II CATG 8 cut(s) 272, 464, 591, 635, 800, 805, 941, 1102
Hin6I GCGC 4 cut(s) 248, 399, 1175, 1260
HinP1I GCGC 4 cut(s) 248, 399, 1175, 1260
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HindIII AAGCTT 4 cut(s) 149, 356, 1055, 1252
HinfI GANTC 2 cut(s) 311, 1184
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 3 cut(s) 629, 1038, 1159
Hpy188I TCNGA 2 cut(s) 739, 1004
Hpy188III TCNNGA 1 cut(s) 1398
Hpy8I GTNNAC 3 cut(s) 629, 1038, 1159
Hpy99I CGWCG 3 cut(s) 130, 224, 227
HpyAV CCTTC 4 cut(s) 63, 439, 611, 1210
HpyCH4III ACNGT 2 cut(s) 906, 1080
HpyF10VI GCNNNNNNNGC 7 cut(s) 299, 515, 598, 929, 938, 947, 1251
HpyF3I CTNAG 3 cut(s) 1070, 1094, 1255
Hsp92I GRCGYC 3 cut(s) 128, 248, 1260
Hsp92II CATG 8 cut(s) 272, 464, 591, 635, 800, 805, 941, 1102
HspAI GCGC 4 cut(s) 248, 399, 1175, 1260
KasI GGCGCC 2 cut(s) 247, 1259
Kzo9I GATC 4 cut(s) 46, 61, 235, 1090
LmnI GCTCC 1 cut(s) 193
LweI GCATC 1 cut(s) 1162
MaeI CTAG 3 cut(s) 881, 951, 1106
MaeIII GTNAC 2 cut(s) 859, 1298
MalI GATC 4 cut(s) 48, 63, 237, 1092
MboI GATC 4 cut(s) 46, 61, 235, 1090
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 1090
MhlI GDGCHC 1 cut(s) 1247
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 4 cut(s) 252, 545, 567, 824
MluNI TGGCCA 1 cut(s) 806
Mly113I GGCGCC 2 cut(s) 248, 1260
MlyI GAGTC 1 cut(s) 320
Mox20I TGGCCA 1 cut(s) 806
Mph1103I ATGCAT 1 cut(s) 990
MscI TGGCCA 1 cut(s) 806
MseI TTAA 4 cut(s) 69, 678, 908, 959
MslI CAYNNNNRTG 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 806
MspA1I CMGCKG 2 cut(s) 512, 1296
MspCI CTTAAG 1 cut(s) 958
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 2 cut(s) 1131, 1235
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 2 cut(s) 424, 531
MvaI CCWGG 2 cut(s) 1131, 1235
MvnI CGCG 4 cut(s) 327, 401, 726, 764
MwoI GCNNNNNNNGC 7 cut(s) 299, 515, 598, 929, 938, 947, 1251
NarI GGCGCC 2 cut(s) 248, 1260
NdeII GATC 4 cut(s) 46, 61, 235, 1090
NlaIII CATG 8 cut(s) 272, 464, 591, 635, 800, 805, 941, 1102
NlaIV GGNNCC 2 cut(s) 249, 1261
NmeAIII GCCGAG 2 cut(s) 334, 1226
NsbI TGCGCA 1 cut(s) 1176
NsiI ATGCAT 1 cut(s) 990
NspI RCATGY 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 394
PctI GAATGC 2 cut(s) 424, 531
PfeI GAWTC 1 cut(s) 1184
PleI GAGTC 1 cut(s) 319
PluTI GGCGCC 2 cut(s) 251, 1263
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 1247
Psp6I CCWGG 2 cut(s) 1129, 1233
PspGI CCWGG 2 cut(s) 1129, 1233
PspN4I GGNNCC 2 cut(s) 249, 1261
PspPI GGNCC 2 cut(s) 591, 1159
PspXI VCTCGAGB 1 cut(s) 394
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 1090
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 4 cut(s) 465, 673, 706, 723
RsaNI GTAC 4 cut(s) 464, 672, 705, 722
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 1247
SaqAI TTAA 4 cut(s) 69, 678, 908, 959
Sau3AI GATC 4 cut(s) 46, 61, 235, 1090
Sau96I GGNCC 2 cut(s) 591, 1159
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 1131, 1235
SduI GDGCHC 1 cut(s) 1247
SfaNI GCATC 1 cut(s) 1162
SfcI CTRYAG 3 cut(s) 279, 606, 842
SfoI GGCGCC 2 cut(s) 249, 1261
Sfr274I CTCGAG 1 cut(s) 394
SinI GGWCC 1 cut(s) 1159
SlaI CTCGAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 4 cut(s) 9, 359, 394, 958
SmoI CTYRAG 4 cut(s) 9, 359, 394, 958
Sse9I AATT 4 cut(s) 252, 545, 567, 824
SsiI CCGC 2 cut(s) 325, 1296
SspDI GGCGCC 2 cut(s) 247, 1259
SspMI CTAG 3 cut(s) 881, 951, 1106
SstI GAGCTC 1 cut(s) 1247
StyD4I CCNGG 2 cut(s) 1129, 1233
TaaI ACNGT 2 cut(s) 906, 1080
TaqI TCGA 6 cut(s) 49, 60, 101, 230, 395, 1170
TasI AATT 4 cut(s) 252, 545, 567, 824
TfiI GAWTC 1 cut(s) 1184
Tru1I TTAA 4 cut(s) 69, 678, 908, 959
Tru9I TTAA 4 cut(s) 69, 678, 908, 959
TspDTI ATGAA 4 cut(s) 45, 488, 782, 785
TspGWI ACGGA 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 958
VpaK11BI GGWCC 1 cut(s) 1159
XagI CCTNNNNNAGG 1 cut(s) 1195
XapI RAATTY 1 cut(s) 824
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XhoI CTCGAG 1 cut(s) 394
XspI CTAG 3 cut(s) 881, 951, 1106
Zsp2I ATGCAT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.