Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Bromodomain | PF00439 | 108 - 193 | 1.2e-17 | Bromodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1176 |
| AccB1I | GGYRCC | 2 cut(s) | 247, 1259 |
| AccII | CGCG | 4 cut(s) | 327, 401, 726, 764 |
| AciI | CCGC | 2 cut(s) | 325, 1296 |
| AclWI | GGATC | 2 cut(s) | 243, 1098 |
| AcoI | YGGCCR | 1 cut(s) | 804 |
| AcsI | RAATTY | 1 cut(s) | 824 |
| AcuI | CTGAAG | 5 cut(s) | 324, 885, 945, 1062, 1170 |
| AcyI | GRCGYC | 3 cut(s) | 128, 248, 1260 |
| AfaI | GTAC | 4 cut(s) | 465, 673, 706, 723 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1009, 1197 |
| AflII | CTTAAG | 1 cut(s) | 958 |
| AgsI | TTSAA | 5 cut(s) | 319, 757, 1019, 1139, 1204 |
| AjnI | CCWGG | 2 cut(s) | 1129, 1233 |
| Alw21I | GWGCWC | 1 cut(s) | 1247 |
| Alw26I | GTCTC | 1 cut(s) | 948 |
| AlwI | GGATC | 2 cut(s) | 243, 1098 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 515 |
| Ama87I | CYCGRG | 1 cut(s) | 394 |
| AoxI | GGCC | 4 cut(s) | 590, 693, 804, 1236 |
| ApoI | RAATTY | 1 cut(s) | 824 |
| AspLEI | GCGC | 4 cut(s) | 250, 401, 1177, 1262 |
| AspS9I | GGNCC | 2 cut(s) | 591, 1159 |
| AsuHPI | GGTGA | 1 cut(s) | 28 |
| AvaI | CYCGRG | 1 cut(s) | 394 |
| AvaII | GGWCC | 1 cut(s) | 1159 |
| BalI | TGGCCA | 1 cut(s) | 806 |
| BanI | GGYRCC | 2 cut(s) | 247, 1259 |
| BanII | GRGCYC | 1 cut(s) | 1247 |
| Bbv12I | GWGCWC | 1 cut(s) | 1247 |
| BbvCI | CCTCAGC | 1 cut(s) | 1070 |
| BccI | CCATC | 4 cut(s) | 226, 695, 811, 1003 |
| BceAI | ACGGC | 1 cut(s) | 115 |
| BciT130I | CCWGG | 2 cut(s) | 1131, 1235 |
| BcoDI | GTCTC | 1 cut(s) | 948 |
| BfaI | CTAG | 3 cut(s) | 881, 951, 1106 |
| BfmI | CTRYAG | 3 cut(s) | 279, 606, 842 |
| BfoI | RGCGCY | 2 cut(s) | 251, 1263 |
| BfrI | CTTAAG | 1 cut(s) | 958 |
| Bme1390I | CCNGG | 2 cut(s) | 1131, 1235 |
| Bme18I | GGWCC | 1 cut(s) | 1159 |
| BmeT110I | CYCGRG | 1 cut(s) | 394 |
| BmgT120I | GGNCC | 2 cut(s) | 591, 1159 |
| BmiI | GGNNCC | 2 cut(s) | 249, 1261 |
| BmrFI | CCNGG | 2 cut(s) | 1131, 1235 |
| BmrI | ACTGGG | 1 cut(s) | 717 |
| BmsI | GCATC | 1 cut(s) | 1162 |
| BmuI | ACTGGG | 1 cut(s) | 717 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1070, 1255 |
| BpuEI | CTTGAG | 1 cut(s) | 380 |
| Bsa29I | ATCGAT | 1 cut(s) | 1170 |
| BsaHI | GRCGYC | 3 cut(s) | 128, 248, 1260 |
| BsaWI | WCCGGW | 1 cut(s) | 744 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1009, 1197 |
| Bse1I | ACTGG | 1 cut(s) | 712 |
| Bse3DI | GCAATG | 1 cut(s) | 970 |
| BseBI | CCWGG | 2 cut(s) | 1131, 1235 |
| BseCI | ATCGAT | 1 cut(s) | 1170 |
| BseGI | GGATG | 1 cut(s) | 212 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1009, 1197 |
| BseMI | GCAATG | 1 cut(s) | 970 |
| BseMII | CTCAG | 2 cut(s) | 1084, 1108 |
| BseNI | ACTGG | 1 cut(s) | 712 |
| BseRI | GAGGAG | 1 cut(s) | 794 |
| BsgI | GTGCAG | 1 cut(s) | 1045 |
| Bsh1236I | CGCG | 4 cut(s) | 327, 401, 726, 764 |
| BshFI | GGCC | 4 cut(s) | 592, 695, 806, 1238 |
| BshNI | GGYRCC | 2 cut(s) | 247, 1259 |
| BshVI | ATCGAT | 1 cut(s) | 1170 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1247 |
| BsiHKCI | CYCGRG | 1 cut(s) | 394 |
| BsiSI | CCGG | 1 cut(s) | 745 |
| BslFI | GGGAC | 1 cut(s) | 1066 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1009, 1197 |
| BsmAI | GTCTC | 1 cut(s) | 948 |
| BsmFI | GGGAC | 1 cut(s) | 1066 |
| BsmI | GAATGC | 2 cut(s) | 424, 531 |
| BsnI | GGCC | 4 cut(s) | 592, 695, 806, 1238 |
| BsoBI | CYCGRG | 1 cut(s) | 394 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1247 |
| Bsp143I | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| BspACI | CCGC | 2 cut(s) | 325, 1296 |
| BspANI | GGCC | 4 cut(s) | 592, 695, 806, 1238 |
| BspCNI | CTCAG | 2 cut(s) | 1083, 1107 |
| BspDI | ATCGAT | 1 cut(s) | 1170 |
| BspFNI | CGCG | 4 cut(s) | 327, 401, 726, 764 |
| BspLI | GGNNCC | 2 cut(s) | 249, 1261 |
| BspMAI | CTGCAG | 1 cut(s) | 846 |
| BspPI | GGATC | 2 cut(s) | 243, 1098 |
| BspT107I | GGYRCC | 2 cut(s) | 247, 1259 |
| BspTI | CTTAAG | 1 cut(s) | 958 |
| BsrDI | GCAATG | 1 cut(s) | 970 |
| BsrI | ACTGG | 1 cut(s) | 712 |
| BssMI | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| BssNI | GRCGYC | 3 cut(s) | 128, 248, 1260 |
| Bst2UI | CCWGG | 2 cut(s) | 1131, 1235 |
| Bst4CI | ACNGT | 2 cut(s) | 906, 1080 |
| Bst6I | CTCTTC | 7 cut(s) | 861, 879, 885, 921, 1038, 1043, 1146 |
| BstACI | GRCGYC | 3 cut(s) | 128, 248, 1260 |
| BstAFI | CTTAAG | 1 cut(s) | 958 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 515 |
| BstC8I | GCNNGC | 2 cut(s) | 28, 1252 |
| BstDEI | CTNAG | 3 cut(s) | 1070, 1094, 1255 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1195 |
| BstF5I | GGATG | 1 cut(s) | 212 |
| BstFNI | CGCG | 4 cut(s) | 327, 401, 726, 764 |
| BstH2I | RGCGCY | 2 cut(s) | 251, 1263 |
| BstHHI | GCGC | 4 cut(s) | 250, 401, 1177, 1262 |
| BstKTI | GATC | 4 cut(s) | 49, 64, 238, 1093 |
| BstMAI | GTCTC | 1 cut(s) | 948 |
| BstMBI | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 299, 515, 598, 929, 938, 947, 1251 |
| BstNI | CCWGG | 2 cut(s) | 1131, 1235 |
| BstNSI | RCATGY | 1 cut(s) | 464 |
| BstSCI | CCNGG | 2 cut(s) | 1129, 1233 |
| BstSFI | CTRYAG | 3 cut(s) | 279, 606, 842 |
| BstUI | CGCG | 4 cut(s) | 327, 401, 726, 764 |
| BstX2I | RGATCY | 1 cut(s) | 1090 |
| BstYI | RGATCY | 1 cut(s) | 1090 |
| Bsu15I | ATCGAT | 1 cut(s) | 1170 |
| BsuRI | GGCC | 4 cut(s) | 592, 695, 806, 1238 |
| BsuTUI | ATCGAT | 1 cut(s) | 1170 |
| BtgZI | GCGATG | 2 cut(s) | 779, 804 |
| BtsCI | GGATG | 1 cut(s) | 212 |
| Cac8I | GCNNGC | 2 cut(s) | 28, 1252 |
| CaiI | CAGNNNCTG | 1 cut(s) | 515 |
| CfoI | GCGC | 4 cut(s) | 250, 401, 1177, 1262 |
| Cfr13I | GGNCC | 2 cut(s) | 591, 1159 |
| ClaI | ATCGAT | 1 cut(s) | 1170 |
| CseI | GACGC | 3 cut(s) | 136, 530, 551 |
| Csp6I | GTAC | 4 cut(s) | 464, 672, 705, 722 |
| CviAII | CATG | 8 cut(s) | 269, 461, 588, 632, 797, 802, 938, 1099 |
| CviQI | GTAC | 4 cut(s) | 464, 672, 705, 722 |
| DdeI | CTNAG | 3 cut(s) | 1070, 1094, 1255 |
| DinI | GGCGCC | 2 cut(s) | 249, 1261 |
| DpnI | GATC | 4 cut(s) | 48, 63, 237, 1092 |
| DpnII | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| EaeI | YGGCCR | 1 cut(s) | 804 |
| Eam1104I | CTCTTC | 7 cut(s) | 861, 879, 885, 921, 1038, 1043, 1146 |
| EarI | CTCTTC | 7 cut(s) | 861, 879, 885, 921, 1038, 1043, 1146 |
| Ecl136II | GAGCTC | 1 cut(s) | 1245 |
| Eco24I | GRGCYC | 1 cut(s) | 1247 |
| Eco32I | GATATC | 1 cut(s) | 1168 |
| Eco47I | GGWCC | 1 cut(s) | 1159 |
| Eco53kI | GAGCTC | 1 cut(s) | 1245 |
| Eco57I | CTGAAG | 5 cut(s) | 324, 885, 945, 1062, 1170 |
| Eco88I | CYCGRG | 1 cut(s) | 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 1245 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1195 |
| EcoRII | CCWGG | 2 cut(s) | 1129, 1233 |
| EcoRV | GATATC | 1 cut(s) | 1168 |
| EcoT22I | ATGCAT | 1 cut(s) | 990 |
| EcoT38I | GRGCYC | 1 cut(s) | 1247 |
| EgeI | GGCGCC | 2 cut(s) | 249, 1261 |
| EheI | GGCGCC | 2 cut(s) | 249, 1261 |
| FaeI | CATG | 8 cut(s) | 272, 464, 591, 635, 800, 805, 941, 1102 |
| FaqI | GGGAC | 1 cut(s) | 1066 |
| FatI | CATG | 8 cut(s) | 268, 460, 587, 631, 796, 801, 937, 1098 |
| FokI | GGATG | 1 cut(s) | 199 |
| FriOI | GRGCYC | 1 cut(s) | 1247 |
| FspBI | CTAG | 3 cut(s) | 881, 951, 1106 |
| FspI | TGCGCA | 1 cut(s) | 1176 |
| GlaI | GCGC | 4 cut(s) | 249, 400, 1176, 1261 |
| HaeII | RGCGCY | 2 cut(s) | 251, 1263 |
| HaeIII | GGCC | 4 cut(s) | 592, 695, 806, 1238 |
| HapII | CCGG | 1 cut(s) | 745 |
| HgaI | GACGC | 3 cut(s) | 136, 530, 551 |
| HhaI | GCGC | 4 cut(s) | 250, 401, 1177, 1262 |
| Hin1I | GRCGYC | 3 cut(s) | 128, 248, 1260 |
| Hin1II | CATG | 8 cut(s) | 272, 464, 591, 635, 800, 805, 941, 1102 |
| Hin6I | GCGC | 4 cut(s) | 248, 399, 1175, 1260 |
| HinP1I | GCGC | 4 cut(s) | 248, 399, 1175, 1260 |
| HincII | GTYRAC | 1 cut(s) | 1038 |
| HindII | GTYRAC | 1 cut(s) | 1038 |
| HindIII | AAGCTT | 4 cut(s) | 149, 356, 1055, 1252 |
| HinfI | GANTC | 2 cut(s) | 311, 1184 |
| HpaII | CCGG | 1 cut(s) | 745 |
| HphI | GGTGA | 1 cut(s) | 28 |
| Hpy166II | GTNNAC | 3 cut(s) | 629, 1038, 1159 |
| Hpy188I | TCNGA | 2 cut(s) | 739, 1004 |
| Hpy188III | TCNNGA | 1 cut(s) | 1398 |
| Hpy8I | GTNNAC | 3 cut(s) | 629, 1038, 1159 |
| Hpy99I | CGWCG | 3 cut(s) | 130, 224, 227 |
| HpyAV | CCTTC | 4 cut(s) | 63, 439, 611, 1210 |
| HpyCH4III | ACNGT | 2 cut(s) | 906, 1080 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 299, 515, 598, 929, 938, 947, 1251 |
| HpyF3I | CTNAG | 3 cut(s) | 1070, 1094, 1255 |
| Hsp92I | GRCGYC | 3 cut(s) | 128, 248, 1260 |
| Hsp92II | CATG | 8 cut(s) | 272, 464, 591, 635, 800, 805, 941, 1102 |
| HspAI | GCGC | 4 cut(s) | 248, 399, 1175, 1260 |
| KasI | GGCGCC | 2 cut(s) | 247, 1259 |
| Kzo9I | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| LweI | GCATC | 1 cut(s) | 1162 |
| MaeI | CTAG | 3 cut(s) | 881, 951, 1106 |
| MaeIII | GTNAC | 2 cut(s) | 859, 1298 |
| MalI | GATC | 4 cut(s) | 48, 63, 237, 1092 |
| MboI | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| MfeI | CAATTG | 1 cut(s) | 252 |
| MflI | RGATCY | 1 cut(s) | 1090 |
| MhlI | GDGCHC | 1 cut(s) | 1247 |
| MlsI | TGGCCA | 1 cut(s) | 806 |
| MluCI | AATT | 4 cut(s) | 252, 545, 567, 824 |
| MluNI | TGGCCA | 1 cut(s) | 806 |
| Mly113I | GGCGCC | 2 cut(s) | 248, 1260 |
| MlyI | GAGTC | 1 cut(s) | 320 |
| Mox20I | TGGCCA | 1 cut(s) | 806 |
| Mph1103I | ATGCAT | 1 cut(s) | 990 |
| MscI | TGGCCA | 1 cut(s) | 806 |
| MseI | TTAA | 4 cut(s) | 69, 678, 908, 959 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| Msp20I | TGGCCA | 1 cut(s) | 806 |
| MspA1I | CMGCKG | 2 cut(s) | 512, 1296 |
| MspCI | CTTAAG | 1 cut(s) | 958 |
| MspI | CCGG | 1 cut(s) | 745 |
| MspR9I | CCNGG | 2 cut(s) | 1131, 1235 |
| MunI | CAATTG | 1 cut(s) | 252 |
| Mva1269I | GAATGC | 2 cut(s) | 424, 531 |
| MvaI | CCWGG | 2 cut(s) | 1131, 1235 |
| MvnI | CGCG | 4 cut(s) | 327, 401, 726, 764 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 299, 515, 598, 929, 938, 947, 1251 |
| NarI | GGCGCC | 2 cut(s) | 248, 1260 |
| NdeII | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| NlaIII | CATG | 8 cut(s) | 272, 464, 591, 635, 800, 805, 941, 1102 |
| NlaIV | GGNNCC | 2 cut(s) | 249, 1261 |
| NmeAIII | GCCGAG | 2 cut(s) | 334, 1226 |
| NsbI | TGCGCA | 1 cut(s) | 1176 |
| NsiI | ATGCAT | 1 cut(s) | 990 |
| NspI | RCATGY | 1 cut(s) | 464 |
| PaeR7I | CTCGAG | 1 cut(s) | 394 |
| PctI | GAATGC | 2 cut(s) | 424, 531 |
| PfeI | GAWTC | 1 cut(s) | 1184 |
| PleI | GAGTC | 1 cut(s) | 319 |
| PluTI | GGCGCC | 2 cut(s) | 251, 1263 |
| PpsI | GAGTC | 1 cut(s) | 319 |
| Psp124BI | GAGCTC | 1 cut(s) | 1247 |
| Psp6I | CCWGG | 2 cut(s) | 1129, 1233 |
| PspGI | CCWGG | 2 cut(s) | 1129, 1233 |
| PspN4I | GGNNCC | 2 cut(s) | 249, 1261 |
| PspPI | GGNCC | 2 cut(s) | 591, 1159 |
| PspXI | VCTCGAGB | 1 cut(s) | 394 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 418, 450 |
| PstI | CTGCAG | 1 cut(s) | 846 |
| PstNI | CAGNNNCTG | 1 cut(s) | 515 |
| PsuI | RGATCY | 1 cut(s) | 1090 |
| PvuII | CAGCTG | 1 cut(s) | 512 |
| RsaI | GTAC | 4 cut(s) | 465, 673, 706, 723 |
| RsaNI | GTAC | 4 cut(s) | 464, 672, 705, 722 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SacI | GAGCTC | 1 cut(s) | 1247 |
| SaqAI | TTAA | 4 cut(s) | 69, 678, 908, 959 |
| Sau3AI | GATC | 4 cut(s) | 46, 61, 235, 1090 |
| Sau96I | GGNCC | 2 cut(s) | 591, 1159 |
| SchI | GAGTC | 1 cut(s) | 320 |
| ScrFI | CCNGG | 2 cut(s) | 1131, 1235 |
| SduI | GDGCHC | 1 cut(s) | 1247 |
| SfaNI | GCATC | 1 cut(s) | 1162 |
| SfcI | CTRYAG | 3 cut(s) | 279, 606, 842 |
| SfoI | GGCGCC | 2 cut(s) | 249, 1261 |
| Sfr274I | CTCGAG | 1 cut(s) | 394 |
| SinI | GGWCC | 1 cut(s) | 1159 |
| SlaI | CTCGAG | 1 cut(s) | 394 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 4 cut(s) | 9, 359, 394, 958 |
| SmoI | CTYRAG | 4 cut(s) | 9, 359, 394, 958 |
| Sse9I | AATT | 4 cut(s) | 252, 545, 567, 824 |
| SsiI | CCGC | 2 cut(s) | 325, 1296 |
| SspDI | GGCGCC | 2 cut(s) | 247, 1259 |
| SspMI | CTAG | 3 cut(s) | 881, 951, 1106 |
| SstI | GAGCTC | 1 cut(s) | 1247 |
| StyD4I | CCNGG | 2 cut(s) | 1129, 1233 |
| TaaI | ACNGT | 2 cut(s) | 906, 1080 |
| TaqI | TCGA | 6 cut(s) | 49, 60, 101, 230, 395, 1170 |
| TasI | AATT | 4 cut(s) | 252, 545, 567, 824 |
| TfiI | GAWTC | 1 cut(s) | 1184 |
| Tru1I | TTAA | 4 cut(s) | 69, 678, 908, 959 |
| Tru9I | TTAA | 4 cut(s) | 69, 678, 908, 959 |
| TspDTI | ATGAA | 4 cut(s) | 45, 488, 782, 785 |
| TspGWI | ACGGA | 1 cut(s) | 208 |
| Vha464I | CTTAAG | 1 cut(s) | 958 |
| VpaK11BI | GGWCC | 1 cut(s) | 1159 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1195 |
| XapI | RAATTY | 1 cut(s) | 824 |
| XceI | RCATGY | 1 cut(s) | 464 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 814 |
| XhoI | CTCGAG | 1 cut(s) | 394 |
| XspI | CTAG | 3 cut(s) | 881, 951, 1106 |
| Zsp2I | ATGCAT | 1 cut(s) | 990 |