Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

17269860 .. 17273784

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTTTGGGCCTAAAGTATGGTTGGGGAAGCCCAATGACCCACTCAGCTCTGAGACTCACTATGCATCTCAGTCCCTACAGATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCAATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAATGACGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCAAGGGAAAAAGACAGGGATAAGCACTTTAACACCATTAAGAAGCAGCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTCAAACAGATCACTCAGCACAAGTGGTCGTGGCCCTTTATGTCGCCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACAGTACAAAGTAAAATGGAAACTGGTGGGTATAAGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAACGCAATCAAATACAATGATGACAAAGATGATGTCCACGTGATGGCCCAAACACTGTTGGAAAAATTAGAAGAAAAGTGGCTACAACTCTTGCCGAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCACAGGCACAGGTAGACATGAAACACGCTGAGGAGGTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGCGAGCTTTTTGAGATTGATAAGTATTTGAAAGATCTCAAAAAAGTGGTGGTTCAGAAGTGCAGAAAAATGTCTTTTGATGATAAAAGACGACTTGGGACGGCTCTTACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTAGATATAGTTGCTCAGGATAATCCCGAGTTCCAAGCAACTGCGCAAGAGGTGGATCTTGACATTGATACTCAGAGCGACTACACATTATGGAGGTTAAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCGAGCTGCTGCACAAATTCCTGAAGCCATGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCCTCTGATGCTGTTGCCAAACCTGCCGTTAAAAGAACTAAAAAAATCTCCTCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

392

Amino Acids

44.54

Weight (kDa)

8.25

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	123 - 206	1.7e-19	Bromodomain
BET	PF17035	280 - 343	2.8e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
Acc16I	TGCGCA	1 cut(s)	957
Acc36I	ACCTGC	1 cut(s)	1147
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	3 cut(s)	128, 327, 369
AclWI	GGATC	2 cut(s)	771, 975
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	165, 1062
AcuI	CTGAAG	3 cut(s)	153, 915, 1089
AcvI	CACGTG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	490, 495
AfiI	CCNNNNNNNGG	3 cut(s)	82, 255, 610
AgsI	TTSAA	7 cut(s)	255, 358, 379, 434, 565, 674, 802
AluBI	AGCT	3 cut(s)	48, 778, 1052
AluI	AGCT	3 cut(s)	48, 778, 1052
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	771, 975
Ama87I	CYCGRG	2 cut(s)	938, 1047
AoxI	GGCC	5 cut(s)	8, 407, 612, 756, 1044
ApeKI	GCWGC	7 cut(s)	298, 311, 329, 332, 771, 1052, 1055
ApoI	RAATTY	2 cut(s)	165, 1062
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	5 cut(s)	8, 408, 481, 613, 1045
AvaI	CYCGRG	2 cut(s)	938, 1047
AvaII	GGWCC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	1119
BbrPI	CACGTG	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	7 cut(s)	310, 316, 319, 323, 783, 1039, 1042
BccI	CCATC	2 cut(s)	76, 604
BceAI	ACGGC	2 cut(s)	888, 1127
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	77, 423
BfuAI	ACCTGC	1 cut(s)	1147
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	3 cut(s)	349, 805, 898
BisI	GCNGC	9 cut(s)	129, 299, 312, 327, 330, 333, 772, 1053, 1056
BlsI	GCNGC	9 cut(s)	130, 300, 313, 328, 331, 334, 773, 1054, 1057
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	2 cut(s)	938, 1047
BmgT120I	GGNCC	5 cut(s)	8, 408, 481, 613, 1045
BmiI	GGNNCC	2 cut(s)	87, 1116
BmsI	GCATC	4 cut(s)	74, 298, 1018, 1114
Bpu10I	CCTNAGC	2 cut(s)	732, 927
BpuEI	CTTGAG	2 cut(s)	209, 244
BsaAI	YACGTR	2 cut(s)	317, 607
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	477, 484, 759, 1074
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 255, 610
Bse1I	ACTGG	1 cut(s)	517
BseDI	CCNNGG	4 cut(s)	477, 484, 759, 1074
BseGI	GGATG	1 cut(s)	1033
BseLI	CCNNNNNNNGG	3 cut(s)	82, 255, 610
BseMII	CTCAG	8 cut(s)	42, 58, 83, 404, 723, 916, 941, 998
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	3 cut(s)	692, 749, 1156
BseXI	GCAGC	7 cut(s)	310, 316, 319, 323, 783, 1039, 1042
BsgI	GTGCAG	2 cut(s)	853, 1041
BshFI	GGCC	5 cut(s)	10, 409, 614, 758, 1046
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	2 cut(s)	938, 1047
BslFI	GGGAC	2 cut(s)	58, 883
BslI	CCNNNNNNNGG	3 cut(s)	82, 255, 610
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	58, 883
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	5 cut(s)	10, 409, 614, 758, 1046
BsoBI	CYCGRG	2 cut(s)	938, 1047
Bsp1286I	GDGCHC	2 cut(s)	216, 1119
Bsp143I	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
Bsp19I	CCATGG	2 cut(s)	477, 1074
BspACI	CCGC	3 cut(s)	128, 327, 369
BspANI	GGCC	5 cut(s)	10, 409, 614, 758, 1046
BspCNI	CTCAG	8 cut(s)	43, 57, 82, 403, 724, 915, 940, 997
BspLI	GGNNCC	2 cut(s)	87, 1116
BspMI	ACCTGC	1 cut(s)	1147
BspPI	GGATC	2 cut(s)	771, 975
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	477, 484, 759, 1074
BssMI	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	4 cut(s)	477, 484, 759, 1074
Bst4CI	ACNGT	3 cut(s)	493, 624, 885
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	207
BstBAI	YACGTR	2 cut(s)	317, 607
BstC8I	GCNNGC	2 cut(s)	751, 776
BstDEI	CTNAG	9 cut(s)	44, 51, 69, 390, 732, 767, 902, 927, 984
BstDSI	CCRYGG	2 cut(s)	477, 1074
BstF5I	GGATG	1 cut(s)	1033
BstHHI	GCGC	1 cut(s)	958
BstKTI	GATC	6 cut(s)	352, 387, 766, 808, 901, 970
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 755, 1052, 1139
BstSFI	CTRYAG	2 cut(s)	77, 423
BstV1I	GCAGC	7 cut(s)	310, 316, 319, 323, 783, 1039, 1042
BstX2I	RGATCY	5 cut(s)	349, 763, 805, 898, 967
BstYI	RGATCY	5 cut(s)	349, 763, 805, 898, 967
BsuRI	GGCC	5 cut(s)	10, 409, 614, 758, 1046
BtgI	CCRYGG	2 cut(s)	477, 1074
BtsCI	GGATG	1 cut(s)	1033
BtsIMutI	CAGTG	1 cut(s)	620
BveI	ACCTGC	1 cut(s)	1147
Cac8I	GCNNGC	2 cut(s)	751, 776
CfoI	GCGC	1 cut(s)	958
Cfr13I	GGNCC	5 cut(s)	8, 408, 481, 613, 1045
Csp6I	GTAC	2 cut(s)	489, 494
CviAII	CATG	5 cut(s)	449, 478, 721, 754, 1075
CviQI	GTAC	2 cut(s)	489, 494
DdeI	CTNAG	9 cut(s)	44, 51, 69, 390, 732, 767, 902, 927, 984
DpnI	GATC	6 cut(s)	351, 386, 765, 807, 900, 969
DpnII	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	4 cut(s)	477, 484, 759, 1074
Eco24I	GRGCYC	1 cut(s)	1119
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	3 cut(s)	153, 915, 1089
Eco72I	CACGTG	1 cut(s)	607
Eco88I	CYCGRG	2 cut(s)	938, 1047
EcoT14I	CCWWGG	4 cut(s)	477, 484, 759, 1074
EcoT22I	ATGCAT	2 cut(s)	67, 1033
EcoT38I	GRGCYC	1 cut(s)	1119
ErhI	CCWWGG	4 cut(s)	477, 484, 759, 1074
FaeI	CATG	5 cut(s)	452, 481, 724, 757, 1078
FaqI	GGGAC	2 cut(s)	58, 883
FatI	CATG	5 cut(s)	448, 477, 720, 753, 1074
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	9 cut(s)	129, 299, 312, 327, 330, 333, 772, 1053, 1056
FokI	GGATG	1 cut(s)	1040
FriOI	GRGCYC	1 cut(s)	1119
Fsp4HI	GCNGC	9 cut(s)	129, 299, 312, 327, 330, 333, 772, 1053, 1056
FspBI	CTAG	1 cut(s)	114
FspI	TGCGCA	1 cut(s)	957
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	9 cut(s)	129, 299, 312, 327, 330, 333, 772, 1053, 1056
HaeIII	GGCC	5 cut(s)	10, 409, 614, 758, 1046
HhaI	GCGC	1 cut(s)	958
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	452, 481, 724, 757, 1078
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HinfI	GANTC	3 cut(s)	55, 110, 152
Hpy166II	GTNNAC	2 cut(s)	604, 718
Hpy188I	TCNGA	4 cut(s)	52, 828, 987, 1123
Hpy188III	TCNNGA	8 cut(s)	114, 149, 565, 893, 929, 938, 971, 1067
Hpy8I	GTNNAC	2 cut(s)	604, 718
Hpy99I	CGWCG	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	493, 624, 885
HpyCH4IV	ACGT	3 cut(s)	207, 316, 606
HpyCH4V	TGCA	9 cut(s)	65, 241, 311, 335, 448, 834, 1031, 1058, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 755, 1052, 1139
HpyF3I	CTNAG	9 cut(s)	44, 51, 69, 390, 732, 767, 902, 927, 984
HpySE526I	ACGT	3 cut(s)	207, 316, 606
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	452, 481, 724, 757, 1078
HspAI	GCGC	1 cut(s)	956
Kzo9I	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
LmnI	GCTCC	2 cut(s)	85, 1114
Lsp1109I	GCAGC	7 cut(s)	310, 316, 319, 323, 783, 1039, 1042
LweI	GCATC	4 cut(s)	74, 298, 1018, 1114
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	3 cut(s)	207, 316, 606
MalI	GATC	6 cut(s)	351, 386, 765, 807, 900, 969
MboI	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
MboII	GAAGA	4 cut(s)	367, 650, 686, 908
MflI	RGATCY	5 cut(s)	349, 763, 805, 898, 967
MhlI	GDGCHC	2 cut(s)	216, 1119
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	3 cut(s)	165, 632, 1062
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	606
Mox20I	TGGCCA	1 cut(s)	758
Mph1103I	ATGCAT	2 cut(s)	67, 1033
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	7 cut(s)	180, 282, 291, 1010, 1034, 1041, 1146
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	332, 755, 1052, 1139
NcoI	CCATGG	2 cut(s)	477, 1074
NdeII	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
NlaIII	CATG	5 cut(s)	452, 481, 724, 757, 1078
NlaIV	GGNNCC	2 cut(s)	87, 1116
NsbI	TGCGCA	1 cut(s)	957
NsiI	ATGCAT	2 cut(s)	67, 1033
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	110, 152
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	9 cut(s)	130, 300, 313, 328, 331, 334, 773, 1054, 1057
PleI	GAGTC	1 cut(s)	49
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	2 cut(s)	317, 607
PspCI	CACGTG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	87, 1116
PspPI	GGNCC	5 cut(s)	8, 408, 481, 613, 1045
PsuI	RGATCY	5 cut(s)	349, 763, 805, 898, 967
RsaI	GTAC	2 cut(s)	490, 495
RsaNI	GTAC	2 cut(s)	489, 494
SaqAI	TTAA	7 cut(s)	180, 282, 291, 1010, 1034, 1041, 1146
SatI	GCNGC	9 cut(s)	129, 299, 312, 327, 330, 333, 772, 1053, 1056
Sau3AI	GATC	6 cut(s)	349, 384, 763, 805, 898, 967
Sau96I	GGNCC	5 cut(s)	8, 408, 481, 613, 1045
SchI	GAGTC	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	216, 1119
SfaNI	GCATC	4 cut(s)	74, 298, 1018, 1114
SfcI	CTRYAG	2 cut(s)	77, 423
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	2 cut(s)	188, 223
SmoI	CTYRAG	2 cut(s)	188, 223
Sse9I	AATT	3 cut(s)	165, 632, 1062
SsiI	CCGC	3 cut(s)	128, 327, 369
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	4 cut(s)	477, 484, 759, 1074
TaaI	ACNGT	3 cut(s)	493, 624, 885
TaiI	ACGT	3 cut(s)	210, 319, 609
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	165, 632, 1062
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	2 cut(s)	131, 329
TfiI	GAWTC	2 cut(s)	110, 152
Tru1I	TTAA	7 cut(s)	180, 282, 291, 1010, 1034, 1041, 1146
Tru9I	TTAA	7 cut(s)	180, 282, 291, 1010, 1034, 1041, 1146
TscAI	CASTG	1 cut(s)	627
TseI	GCWGC	7 cut(s)	298, 311, 329, 332, 771, 1052, 1055
TspDTI	ATGAA	3 cut(s)	87, 177, 737
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	165, 1062
XbaI	TCTAGA	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	208
Zsp2I	ATGCAT	2 cut(s)	67, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.