Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

16897883 .. 16901762

Gene Structure 3880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCAATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAATGAGGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAGGGAGAAAGACAGGGATAAACACTTTAACACCATTAAGAAGCAGCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTCAAACAGATCACTCAGCACAAGTGGTCATGGCCCTTTATGTCGCCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACAGTACAAAGTAAAATGGAAACCGGTGGGTATAAGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAATGCAATCAAATACAATGATGACAAAGATGATGTCCATGTGATGGCCCAAACACTGTTGGAAAAATTAGAAGAAAAGTGGTTACAACTCTTGCCTAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCACAGGCACAGGTAGACATGAAACACGCTGAGGAGGTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGTGAGCTTTTTGAGATTGATAAGTATTTGAAAGATCTCAAAAAAGTGGTGGTTCAGAAGTGCAGAAAAATGTCTTTTGATGATAAAAGACGACTTGGGACAGCTCTTACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTGGATATAGTTGCTCAGGATAATCCCGAGTTCCAAGCAACTGCGCAAGAGGTGGATCTTGACATTGATACTCAGAGCGACTACACATTATGGAGGTTAAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCAAGCTGCTGCACAAATTCCTGAAGCCCTGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCCTCTGATGCTGTTGCCAAGCCTGCCGTTAAAAGAACTAAAAAAATCTCCACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

364

Amino Acids

41.52

Weight (kDa)

7.7

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	96 - 179	1.5e-19	Bromodomain
BET	PF17035	253 - 316	2.5e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	876
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	3 cut(s)	47, 246, 288
AclWI	GGATC	2 cut(s)	690, 894
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	2 cut(s)	84, 981
AcuI	CTGAAG	3 cut(s)	72, 834, 1008
AfaI	GTAC	2 cut(s)	409, 414
AfiI	CCNNNNNNNGG	2 cut(s)	174, 529
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	6 cut(s)	277, 298, 353, 484, 593, 721
AjnI	CCWGG	1 cut(s)	993
AluBI	AGCT	3 cut(s)	697, 794, 971
AluI	AGCT	3 cut(s)	697, 794, 971
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	690, 894
Ama87I	CYCGRG	1 cut(s)	857
AoxI	GGCC	4 cut(s)	326, 531, 675, 963
ApeKI	GCWGC	6 cut(s)	217, 230, 248, 251, 971, 974
ApoI	RAATTY	2 cut(s)	84, 981
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AsiGI	ACCGGT	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	4 cut(s)	327, 400, 532, 964
AvaI	CYCGRG	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	1038
Bbv12I	GWGCWC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	6 cut(s)	229, 235, 238, 242, 958, 961
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	1 cut(s)	1046
BciT130I	CCWGG	1 cut(s)	995
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	342
BglI	GCCNNNNNGGC	1 cut(s)	674
BglII	AGATCT	3 cut(s)	268, 724, 817
BisI	GCNGC	8 cut(s)	48, 218, 231, 246, 249, 252, 972, 975
BlsI	GCNGC	8 cut(s)	49, 219, 232, 247, 250, 253, 973, 976
Bme1390I	CCNGG	1 cut(s)	995
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	857
BmgT120I	GGNCC	4 cut(s)	327, 400, 532, 964
BmiI	GGNNCC	2 cut(s)	6, 1035
BmrFI	CCNGG	1 cut(s)	995
BmsI	GCATC	3 cut(s)	217, 937, 1033
Bpu10I	CCTNAGC	2 cut(s)	651, 846
BpuEI	CTTGAG	2 cut(s)	128, 163
BsaAI	YACGTR	1 cut(s)	236
BsaJI	CCNNGG	5 cut(s)	396, 403, 678, 993, 994
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 529
Bse118I	RCCGGY	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	995
BseDI	CCNNGG	5 cut(s)	396, 403, 678, 993, 994
BseGI	GGATG	1 cut(s)	952
BseLI	CCNNNNNNNGG	2 cut(s)	174, 529
BseMII	CTCAG	5 cut(s)	323, 642, 835, 860, 917
BseRI	GAGGAG	2 cut(s)	611, 668
BseXI	GCAGC	6 cut(s)	229, 235, 238, 242, 958, 961
BsgI	GTGCAG	2 cut(s)	772, 960
BshFI	GGCC	4 cut(s)	328, 533, 677, 965
BshTI	ACCGGT	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	857
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	2 cut(s)	174, 529
BsmFI	GGGAC	1 cut(s)	802
BsmI	GAATGC	2 cut(s)	267, 493
BsnI	GGCC	4 cut(s)	328, 533, 677, 965
BsoBI	CYCGRG	1 cut(s)	857
Bsp1286I	GDGCHC	2 cut(s)	135, 1038
Bsp143I	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	3 cut(s)	47, 246, 288
BspANI	GGCC	4 cut(s)	328, 533, 677, 965
BspCNI	CTCAG	5 cut(s)	322, 643, 834, 859, 916
BspLI	GGNNCC	2 cut(s)	6, 1035
BspPI	GGATC	2 cut(s)	690, 894
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	5 cut(s)	396, 403, 678, 993, 994
BssMI	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
BssT1I	CCWWGG	3 cut(s)	396, 403, 678
Bst2UI	CCWGG	1 cut(s)	995
Bst4CI	ACNGT	3 cut(s)	412, 543, 804
Bst6I	CTCTTC	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	670, 1059
BstDEI	CTNAG	6 cut(s)	309, 651, 686, 821, 846, 903
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	952
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	6 cut(s)	271, 306, 685, 727, 820, 889
BstMBI	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 674, 971, 1058
BstNI	CCWGG	1 cut(s)	995
BstSCI	CCNGG	1 cut(s)	993
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	6 cut(s)	229, 235, 238, 242, 958, 961
BstX2I	RGATCY	5 cut(s)	268, 682, 724, 817, 886
BstYI	RGATCY	5 cut(s)	268, 682, 724, 817, 886
BsuRI	GGCC	4 cut(s)	328, 533, 677, 965
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	952
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	2 cut(s)	539, 697
Cac8I	GCNNGC	2 cut(s)	670, 1059
CfoI	GCGC	1 cut(s)	877
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	4 cut(s)	327, 400, 532, 964
Csp6I	GTAC	2 cut(s)	408, 413
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	6 cut(s)	324, 368, 397, 524, 640, 673
CviQI	GTAC	2 cut(s)	408, 413
DdeI	CTNAG	6 cut(s)	309, 651, 686, 821, 846, 903
DpnI	GATC	6 cut(s)	270, 305, 684, 726, 819, 888
DpnII	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	3 cut(s)	396, 403, 678
Eco24I	GRGCYC	1 cut(s)	1038
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	3 cut(s)	72, 834, 1008
Eco88I	CYCGRG	1 cut(s)	857
EcoRII	CCWGG	1 cut(s)	993
EcoT14I	CCWWGG	3 cut(s)	396, 403, 678
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	3 cut(s)	396, 403, 678
FaeI	CATG	6 cut(s)	327, 371, 400, 527, 643, 676
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	6 cut(s)	323, 367, 396, 523, 639, 672
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	8 cut(s)	48, 218, 231, 246, 249, 252, 972, 975
FokI	GGATG	1 cut(s)	959
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	8 cut(s)	48, 218, 231, 246, 249, 252, 972, 975
FspBI	CTAG	1 cut(s)	33
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	8 cut(s)	48, 218, 231, 246, 249, 252, 972, 975
HaeIII	GGCC	4 cut(s)	328, 533, 677, 965
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	877
Hin1II	CATG	6 cut(s)	327, 371, 400, 527, 643, 676
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HinfI	GANTC	2 cut(s)	29, 71
HpaII	CCGG	1 cut(s)	432
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	3 cut(s)	747, 906, 1042
Hpy188III	TCNNGA	8 cut(s)	33, 68, 484, 812, 848, 857, 890, 986
Hpy8I	GTNNAC	1 cut(s)	637
HpyCH4III	ACNGT	3 cut(s)	412, 543, 804
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	9 cut(s)	160, 230, 254, 367, 491, 753, 950, 977, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 674, 971, 1058
HpyF3I	CTNAG	6 cut(s)	309, 651, 686, 821, 846, 903
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	6 cut(s)	327, 371, 400, 527, 643, 676
HspAI	GCGC	1 cut(s)	875
Kzo9I	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
LmnI	GCTCC	2 cut(s)	4, 1033
Lsp1109I	GCAGC	6 cut(s)	229, 235, 238, 242, 958, 961
LweI	GCATC	3 cut(s)	217, 937, 1033
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	6 cut(s)	270, 305, 684, 726, 819, 888
MboI	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
MboII	GAAGA	4 cut(s)	286, 569, 605, 827
MflI	RGATCY	5 cut(s)	268, 682, 724, 817, 886
MhlI	GDGCHC	2 cut(s)	135, 1038
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	3 cut(s)	84, 551, 981
MluNI	TGGCCA	1 cut(s)	677
MmeI	TCCRAC	1 cut(s)	525
Mox20I	TGGCCA	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	952
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	7 cut(s)	99, 201, 210, 929, 953, 960, 1065
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	995
Mva1269I	GAATGC	2 cut(s)	267, 493
MvaI	CCWGG	1 cut(s)	995
MwoI	GCNNNNNNNGC	4 cut(s)	251, 674, 971, 1058
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
NlaIII	CATG	6 cut(s)	327, 371, 400, 527, 643, 676
NlaIV	GGNNCC	2 cut(s)	6, 1035
NsbI	TGCGCA	1 cut(s)	876
NsiI	ATGCAT	1 cut(s)	952
PasI	CCCWGGG	1 cut(s)	994
PctI	GAATGC	2 cut(s)	267, 493
PfeI	GAWTC	2 cut(s)	29, 71
PflMI	CCANNNNNTGG	1 cut(s)	529
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	8 cut(s)	49, 219, 232, 247, 250, 253, 973, 976
Ppu21I	YACGTR	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	993
PspGI	CCWGG	1 cut(s)	993
PspN4I	GGNNCC	2 cut(s)	6, 1035
PspPI	GGNCC	4 cut(s)	327, 400, 532, 964
PsuI	RGATCY	5 cut(s)	268, 682, 724, 817, 886
RsaI	GTAC	2 cut(s)	409, 414
RsaNI	GTAC	2 cut(s)	408, 413
SaqAI	TTAA	7 cut(s)	99, 201, 210, 929, 953, 960, 1065
SatI	GCNGC	8 cut(s)	48, 218, 231, 246, 249, 252, 972, 975
Sau3AI	GATC	6 cut(s)	268, 303, 682, 724, 817, 886
Sau96I	GGNCC	4 cut(s)	327, 400, 532, 964
ScrFI	CCNGG	1 cut(s)	995
SduI	GDGCHC	2 cut(s)	135, 1038
SfaNI	GCATC	3 cut(s)	217, 937, 1033
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	107, 142
SmoI	CTYRAG	2 cut(s)	107, 142
Sse9I	AATT	3 cut(s)	84, 551, 981
SsiI	CCGC	3 cut(s)	47, 246, 288
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	993
StyI	CCWWGG	3 cut(s)	396, 403, 678
TaaI	ACNGT	3 cut(s)	412, 543, 804
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	129, 173
TasI	AATT	3 cut(s)	84, 551, 981
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	2 cut(s)	50, 248
TfiI	GAWTC	2 cut(s)	29, 71
Tru1I	TTAA	7 cut(s)	99, 201, 210, 929, 953, 960, 1065
Tru9I	TTAA	7 cut(s)	99, 201, 210, 929, 953, 960, 1065
TscAI	CASTG	2 cut(s)	546, 697
TseI	GCWGC	6 cut(s)	217, 230, 248, 251, 971, 974
TspDTI	ATGAA	3 cut(s)	6, 96, 656
TspRI	CASTG	2 cut(s)	546, 697
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	2 cut(s)	84, 981
XbaI	TCTAGA	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.