Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

15430867 .. 15431028

Gene Structure 162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1151100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGAAGCCAAGGATGGTAGTGAGTATAAGAATGTCGGAGAGATATATGCTGATGTGAGGCTGGTTTTCAAGAATGCAATGAAATATAATGATGAAGGTGAAGATGTCTATGTGATGGCCCAATCGTTGTTGCAAAATTTCGAAGAAAAAAAAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

54

Amino Acids

6.11

Weight (kDa)

4.58

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	7 - 41	1.9e-09	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	141
BccI	CCATC	2 cut(s)	8, 109
BmgT120I	GGNCC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	141
BspANI	GGCC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	1528
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	118
CviJI	RGCY	4 cut(s)	8, 61, 119, 159
CviKI_1	RGCY	4 cut(s)	8, 61, 119, 159
Eco130I	CCWWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaiI	YATR	5 cut(s)	27, 46, 48, 87, 111
FokI	GGATG	1 cut(s)	26
FspEI	CC	9 cut(s)	21, 22, 43, 47, 81, 101, 133, 134, 141
HaeIII	GGCC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	77, 133
LpnPI	CCDG	1 cut(s)	47
MboII	GAAGA	2 cut(s)	113, 155
MluCI	AATT	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	141
PctI	GAATGC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	118
SetI	ASST	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	141
SgeI	CNNG	3 cut(s)	22, 74, 82
Sse9I	AATT	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	95, 108
XapI	RAATTY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.