Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

6117055 .. 6118057

Gene Structure 1003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAAGAATTCCGGGGGACATTCCGGGCAACTTATGGCTGCAGCATAGATCCTATTCCCAACAGTATCCACTCAAACTCCACCTCCTCATCTCCTGATGTCAGCATCGAGTATCTTGACTATGATACATGCGATGAAACAAAGGATTGGACGAAAGAAGGATACGCGACCCGCCCTGGGATGCAAAATACATGTCGTTCATGCTGGGCATTTGCGGCCGAAGCAGGAGTGGAAGGGATTGCACATATCAGGAACAGAGAAAACCCAGCTCGACTATCCTCGCAGCAGCTCGTTGATTGTGATGAGAAGTATAACAGGGCTGCAGAGGCGTGTGACCTCGCTAAGGAAAAACAATTTGATGCAAGTATCACTGGGTTCACTCTCGTGCCGCCAAATGACGAGTTTGAGCTGATGAAGGCAGTATGCATGCAGCCGGTGAACTTCAGCGCTACACACACTGGTGGAGTATTCAGTGGAGAGTGTGGAACGGAGTTAGGGCACGCTGTGACCATTGTTGGAATGGGGAAGACTGATGACGGCATTAAGTACTGGAAATTGATGAATTCGTGGGGTGAGATGTGGGGCGAAGGAGGGTATATTAGAATTCTCAGAGGAACTGGCAAGCCAGAAGGTCATTGTGGCATAAATATTGAACCTTCTTATCCCGATATTGGTGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

227

Amino Acids

24.95

Weight (kDa)

4.72

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	46 - 111	1.7e-12	Papain family cysteine protease
Peptidase_C1	PF00112	103 - 222	3.7e-22	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	3 cut(s)	172, 215, 389
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	8, 562, 603
AcuI	CTGAAG	1 cut(s)	427
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	1 cut(s)	548
AfeI	AGCGCT	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	177, 343, 671
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	175
AleI	CACNNNNGTG	2 cut(s)	383, 459
AluBI	AGCT	3 cut(s)	269, 289, 409
AluI	AGCT	3 cut(s)	269, 289, 409
AlwI	GGATC	1 cut(s)	44
Aor51HI	AGCGCT	1 cut(s)	448
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	6 cut(s)	39, 42, 283, 286, 320, 430
ApoI	RAATTY	3 cut(s)	8, 562, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AspLEI	GCGC	1 cut(s)	449
AsuC2I	CCSGG	2 cut(s)	14, 26
AsuHPI	GGTGA	2 cut(s)	448, 584
BaeGI	GKGCMC	1 cut(s)	501
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	6 cut(s)	26, 54, 295, 298, 307, 442
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	2 cut(s)	77, 155
BcnI	CCSGG	2 cut(s)	14, 26
BfmI	CTRYAG	2 cut(s)	40, 321
BfoI	RGCGCY	1 cut(s)	450
BfuI	GTATCC	2 cut(s)	77, 155
BisI	GCNGC	8 cut(s)	40, 43, 216, 284, 287, 321, 389, 431
BlsI	GCNGC	8 cut(s)	41, 44, 217, 285, 288, 322, 390, 432
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	3 cut(s)	14, 26, 177
BmrFI	CCNGG	3 cut(s)	14, 26, 177
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	3 cut(s)	114, 171, 349
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	14, 26
BsaJI	CCNNGG	3 cut(s)	13, 175, 176
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 68, 92, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 343, 671
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	4 cut(s)	376, 463, 554, 622
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	13, 175, 176
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	177, 343, 671
BseMII	CTCAG	1 cut(s)	622
BseNI	ACTGG	4 cut(s)	376, 463, 554, 622
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	501
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	6 cut(s)	26, 54, 295, 298, 307, 442
BseYI	CCCAGC	2 cut(s)	204, 265
Bsh1236I	CGCG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	13, 25, 434
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	177, 343, 671
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	3 cut(s)	172, 215, 389
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	167
BspMAI	CTGCAG	2 cut(s)	44, 325
BspPI	GGATC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	4 cut(s)	376, 463, 554, 622
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	13, 175, 176
BssMI	GATC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	428, 501, 623
BstDEI	CTNAG	2 cut(s)	342, 608
BstEII	GGTNACC	1 cut(s)	674
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 221, 326
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	3 cut(s)	132, 195, 430
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	3 cut(s)	12, 24, 175
BstSFI	CTRYAG	2 cut(s)	40, 321
BstSLI	GKGCMC	1 cut(s)	501
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	6 cut(s)	26, 54, 295, 298, 307, 442
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	216
BsuI	GTATCC	2 cut(s)	77, 155
BsuRI	GGCC	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	3 cut(s)	369, 456, 478
Cac8I	GCNNGC	3 cut(s)	428, 501, 623
CfoI	GCGC	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	129, 192, 201, 427
CviJI	RGCY	8 cut(s)	39, 218, 269, 289, 320, 409, 433, 625
CviKI_1	RGCY	8 cut(s)	39, 218, 269, 289, 320, 409, 433, 625
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	2 cut(s)	342, 608
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	216
EagI	CGGCCG	1 cut(s)	216
EclXI	CGGCCG	1 cut(s)	216
Eco47III	AGCGCT	1 cut(s)	448
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	427
Eco91I	GGTNACC	1 cut(s)	674
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	674
EcoRI	GAATTC	3 cut(s)	8, 562, 603
EcoRII	CCWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	428
FaeI	CATG	4 cut(s)	132, 195, 204, 430
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	128, 191, 200, 426
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	8 cut(s)	40, 43, 216, 284, 287, 321, 389, 431
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	8 cut(s)	40, 43, 216, 284, 287, 321, 389, 431
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	8 cut(s)	40, 43, 216, 284, 287, 321, 389, 431
GsaI	CCCAGC	2 cut(s)	208, 269
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	3 cut(s)	13, 25, 434
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	4 cut(s)	132, 195, 204, 430
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HpaII	CCGG	3 cut(s)	13, 25, 434
HphI	GGTGA	2 cut(s)	448, 584
Hpy166II	GTNNAC	2 cut(s)	378, 439
Hpy188I	TCNGA	1 cut(s)	611
Hpy188III	TCNNGA	4 cut(s)	95, 116, 250, 665
Hpy8I	GTNNAC	2 cut(s)	378, 439
HpyAV	CCTTC	6 cut(s)	152, 227, 409, 581, 623, 666
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	7 cut(s)	42, 184, 242, 323, 362, 426, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 221, 326
HpyF3I	CTNAG	2 cut(s)	342, 608
Hsp92II	CATG	4 cut(s)	132, 195, 204, 430
HspAI	GCGC	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	49
Lsp1109I	GCAGC	6 cut(s)	26, 54, 295, 298, 307, 442
LweI	GCATC	3 cut(s)	114, 171, 349
MaeIII	GTNAC	3 cut(s)	332, 505, 674
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	17, 538
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	5 cut(s)	8, 353, 554, 562, 603
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	7 cut(s)	94, 97, 289, 319, 347, 584, 605
Mph1103I	ATGCAT	1 cut(s)	428
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	383, 459
MspI	CCGG	3 cut(s)	13, 25, 434
MspR9I	CCNGG	3 cut(s)	14, 26, 177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	215, 221, 326
NciI	CCSGG	2 cut(s)	14, 26
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	132, 195, 204, 430
NmuCI	GTSAC	3 cut(s)	332, 505, 674
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	3 cut(s)	132, 195, 430
OliI	CACNNNNGTG	2 cut(s)	383, 459
PaeI	GCATGC	1 cut(s)	430
PasI	CCCWGGG	1 cut(s)	176
PciI	ACATGT	1 cut(s)	191
PkrI	GCNGC	8 cut(s)	41, 44, 217, 285, 288, 322, 390, 432
PscI	ACATGT	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	674
PspFI	CCCAGC	2 cut(s)	204, 265
PspGI	CCWGG	1 cut(s)	175
PstI	CTGCAG	2 cut(s)	44, 325
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	383, 459
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	8 cut(s)	40, 43, 216, 284, 287, 321, 389, 431
Sau3AI	GATC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	14, 26, 177
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	7 cut(s)	86, 271, 291, 339, 411, 634, 658
SfaNI	GCATC	3 cut(s)	114, 171, 349
SfcI	CTRYAG	2 cut(s)	40, 321
SmiMI	CAYNNNNRTG	2 cut(s)	383, 459
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	5 cut(s)	8, 353, 554, 562, 603
SsiI	CCGC	3 cut(s)	172, 215, 389
SspI	AATATT	1 cut(s)	649
StyD4I	CCNGG	3 cut(s)	12, 24, 175
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	108, 271
TasI	AATT	5 cut(s)	8, 353, 554, 562, 603
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	218, 391
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	3 cut(s)	376, 463, 478
TseFI	GTSAC	3 cut(s)	332, 505, 674
TseI	GCWGC	6 cut(s)	39, 42, 283, 286, 320, 430
Tsp45I	GTSAC	3 cut(s)	332, 505, 674
TspDTI	ATGAA	4 cut(s)	150, 189, 428, 575
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	376, 463, 478
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	3 cut(s)	8, 562, 603
XceI	RCATGY	3 cut(s)	132, 195, 430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
ZrmI	AGTACT	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.