Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

20257454 .. 20258223

Gene Structure 770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1214300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGGATAAACAGTTAACTGCTTCTAAGAAGCAGCAGCAAGATGCATCACGTAGGGAAGCCGCTGCTACAAAGAAAATGCAAGAGCTTATGCGCCAATTTTCTGTAATGTTCCGTCAGATCACTAAGCATGACTGGGCGTGGCCCTTTATGGTTCCTGTAGATGTTGAAGGTCTGGGATTGCATGACTATTATCAAGTCATTGAGAAGCCCATGGACCTTGGTACCATAAAAAATAGAATGGAAACCAAGGATGGTAGTGAGTATAAGAATGTCGGAGAGATATATGCTGATGTGAGGCTGGTTTTCAAGAATGCAATGAAATATAATGATGAAGGTGAGGATGTCTATGTGATGGCCCAATCGTTGTTGCAAAATTTCGAAGAAAAATGGCTAAAGCTTCTGCCTAAAGTTGTTGAAGAGGAAACAAGACGAGCAGACGAGGAAGCAGAGGCACGGCGAAACATGCAACTATCTCAGGATGCTACATTTGCCAGCACGGCTAAGGATCTAAGCAATGAGCTTTTTGAGATTGATGTGTATTTGAGGAACCTCAGACAAACAGTGGTTCAGAAGTGCAGGAAAATGTCTTCGGATGATAAAAGAAAACTCGGGACAGCTCTCTCGCAGTTATCTGCCGAAGATCTCAGCAAGGCTTTAGAAATTGATGCACAGATACTTGGCGGCGAAAAGAAGGAGGGCAGGTGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

238

Amino Acids

27.42

Weight (kDa)

5.92

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	37 - 121	6.8e-20	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	693
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	2 cut(s)	63, 684
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	170, 310, 419
AluBI	AGCT	4 cut(s)	88, 400, 523, 620
AluI	AGCT	4 cut(s)	88, 400, 523, 620
Alw21I	GWGCWC	1 cut(s)	710
Alw44I	GTGCAC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	143, 357
ApaLI	GTGCAC	1 cut(s)	706
ApeKI	GCWGC	3 cut(s)	34, 37, 65
ApoI	RAATTY	1 cut(s)	376
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	144, 217, 358
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	710
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	3 cut(s)	46, 49, 52
BccI	CCATC	2 cut(s)	248, 349
BceAI	ACGGC	2 cut(s)	473, 516
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	693
BglI	GCCNNNNNGGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	5 cut(s)	35, 38, 63, 66, 685
BlsI	GCNGC	5 cut(s)	36, 39, 64, 67, 686
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	144, 217, 358
BmiI	GGNNCC	3 cut(s)	156, 226, 551
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	4 cut(s)	34, 56, 472, 658
BmuI	ACTGGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	213, 220, 249
BsaXI	ACNNNNNCTCC	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	2 cut(s)	324, 523
BseDI	CCNNGG	3 cut(s)	213, 220, 249
BseGI	GGATG	4 cut(s)	259, 349, 487, 601
BseMI	GCAATG	2 cut(s)	324, 523
BseMII	CTCAG	3 cut(s)	491, 568, 661
BseNI	ACTGG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	710
BseXI	GCAGC	3 cut(s)	46, 49, 52
BsgI	GTGCAG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	145, 359
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	145, 359
BsoBI	CYCGRG	1 cut(s)	611
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	3 cut(s)	120, 508, 643
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	63, 684
BspANI	GGCC	2 cut(s)	145, 359
BspCNI	CTCAG	3 cut(s)	490, 567, 660
BspLI	GGNNCC	3 cut(s)	156, 226, 551
BspMI	ACCTGC	1 cut(s)	693
BspPI	GGATC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	324, 523
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	213, 220, 249
BssMI	GATC	3 cut(s)	120, 508, 643
BssT1I	CCWWGG	3 cut(s)	213, 220, 249
Bst4CI	ACNGT	2 cut(s)	15, 565
Bst6I	CTCTTC	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	7 cut(s)	27, 126, 477, 504, 512, 554, 647
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	4 cut(s)	259, 349, 487, 601
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	3 cut(s)	123, 511, 646
BstMBI	GATC	3 cut(s)	120, 508, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 491, 500
BstNSI	RCATGY	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	710
BstV1I	GCAGC	3 cut(s)	46, 49, 52
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	508, 643
BstYI	RGATCY	2 cut(s)	508, 643
BsuRI	GGCC	2 cut(s)	145, 359
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	259, 349, 487, 601
BtsIMutI	CAGTG	1 cut(s)	570
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	144, 217, 358
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	4 cut(s)	131, 185, 214, 466
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	7 cut(s)	27, 126, 477, 504, 512, 554, 647
DpnI	GATC	3 cut(s)	122, 510, 645
DpnII	GATC	3 cut(s)	120, 508, 643
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	3 cut(s)	213, 220, 249
Eco47I	GGWCC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	611
EcoT14I	CCWWGG	3 cut(s)	213, 220, 249
EcoT22I	ATGCAT	1 cut(s)	49
ErhI	CCWWGG	3 cut(s)	213, 220, 249
FaeI	CATG	4 cut(s)	134, 188, 217, 469
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	4 cut(s)	130, 184, 213, 465
Fnu4HI	GCNGC	5 cut(s)	35, 38, 63, 66, 685
FokI	GGATG	4 cut(s)	266, 356, 494, 608
Fsp4HI	GCNGC	5 cut(s)	35, 38, 63, 66, 685
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	5 cut(s)	35, 38, 63, 66, 685
HaeIII	GGCC	2 cut(s)	145, 359
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	4 cut(s)	134, 188, 217, 469
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	398
HpaI	GTTAAC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	18, 708
Hpy188I	TCNGA	5 cut(s)	120, 278, 557, 573, 595
Hpy188III	TCNNGA	3 cut(s)	310, 479, 613
Hpy8I	GTNNAC	2 cut(s)	18, 708
HpyAV	CCTTC	3 cut(s)	164, 329, 688
HpyCH4III	ACNGT	2 cut(s)	15, 565
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	9 cut(s)	47, 82, 184, 317, 373, 469, 579, 671, 708
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 491, 500
HpyF3I	CTNAG	7 cut(s)	27, 126, 477, 504, 512, 554, 647
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	134, 188, 217, 469
HspAI	GCGC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	228
KspAI	GTTAAC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	120, 508, 643
LpnPI	CCDG	8 cut(s)	121, 161, 171, 287, 464, 508, 565, 688
Lsp1109I	GCAGC	3 cut(s)	46, 49, 52
LweI	GCATC	4 cut(s)	34, 56, 472, 658
MaeII	ACGT	1 cut(s)	52
MalI	GATC	3 cut(s)	122, 510, 645
MboI	GATC	3 cut(s)	120, 508, 643
MboII	GAAGA	4 cut(s)	395, 431, 582, 653
MflI	RGATCY	2 cut(s)	508, 643
MhlI	GDGCHC	1 cut(s)	710
MluCI	AATT	3 cut(s)	98, 376, 663
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	8 cut(s)	291, 334, 415, 436, 445, 540, 563, 691
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	3 cut(s)	466, 491, 500
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	120, 508, 643
NlaIII	CATG	4 cut(s)	134, 188, 217, 469
NlaIV	GGNNCC	3 cut(s)	156, 226, 551
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	381
PaqCI	CACCTGC	1 cut(s)	693
PctI	GAATGC	1 cut(s)	319
PkrI	GCNGC	5 cut(s)	36, 39, 64, 67, 686
Ppu21I	YACGTR	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	156, 226, 551
PspPI	GGNCC	3 cut(s)	144, 217, 358
PsuI	RGATCY	2 cut(s)	508, 643
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	5 cut(s)	35, 38, 63, 66, 685
Sau3AI	GATC	3 cut(s)	120, 508, 643
Sau96I	GGNCC	3 cut(s)	144, 217, 358
SduI	GDGCHC	1 cut(s)	710
SfaNI	GCATC	4 cut(s)	34, 56, 472, 658
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	3 cut(s)	98, 376, 663
SsiI	CCGC	2 cut(s)	63, 684
StyI	CCWWGG	3 cut(s)	213, 220, 249
TaaI	ACNGT	2 cut(s)	15, 565
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	98, 376, 663
TauI	GCSGC	2 cut(s)	65, 687
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	570
TseI	GCWGC	3 cut(s)	34, 37, 65
TspDTI	ATGAA	3 cut(s)	17, 335, 348
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	570
VneI	GTGCAC	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.