Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 438 |
| Acc16I | TGCGCA | 1 cut(s) | 915 |
| AccB1I | GGYRCC | 1 cut(s) | 37 |
| AccI | GTMKAC | 2 cut(s) | 833, 983 |
| AccII | CGCG | 2 cut(s) | 185, 801 |
| AciI | CCGC | 3 cut(s) | 81, 799, 1056 |
| AclWI | GGATC | 2 cut(s) | 33, 894 |
| AcoI | YGGCCR | 1 cut(s) | 600 |
| AcsI | RAATTY | 2 cut(s) | 126, 620 |
| AcuI | CTGAAG | 2 cut(s) | 741, 858 |
| AcyI | GRCGYC | 1 cut(s) | 38 |
| AfaI | GTAC | 1 cut(s) | 502 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 805, 993 |
| AflIII | ACRYGT | 2 cut(s) | 256, 514 |
| AgsI | TTSAA | 4 cut(s) | 109, 1000, 1025, 1031 |
| AjnI | CCWGG | 2 cut(s) | 925, 933 |
| AleI | CACNNNNGTG | 1 cut(s) | 1086 |
| AluBI | AGCT | 5 cut(s) | 148, 225, 308, 766, 853 |
| AluI | AGCT | 5 cut(s) | 148, 225, 308, 766, 853 |
| AlwI | GGATC | 2 cut(s) | 33, 894 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 311, 646 |
| Ama87I | CYCGRG | 1 cut(s) | 149 |
| AoxI | GGCC | 3 cut(s) | 386, 489, 600 |
| ApeKI | GCWGC | 8 cut(s) | 277, 280, 290, 305, 308, 311, 397, 728 |
| ApoI | RAATTY | 2 cut(s) | 126, 620 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1024, 1056 |
| AspLEI | GCGC | 3 cut(s) | 40, 339, 916 |
| AspS9I | GGNCC | 1 cut(s) | 955 |
| AsuC2I | CCSGG | 1 cut(s) | 116 |
| AsuHPI | GGTGA | 1 cut(s) | 454 |
| AvaI | CYCGRG | 1 cut(s) | 149 |
| AvaII | GGWCC | 1 cut(s) | 955 |
| AxyI | CCTNAGG | 1 cut(s) | 882 |
| BalI | TGGCCA | 1 cut(s) | 602 |
| BanI | GGYRCC | 1 cut(s) | 37 |
| BauI | CACGAG | 1 cut(s) | 732 |
| BbvI | GCAGC | 8 cut(s) | 289, 292, 295, 298, 302, 317, 409, 715 |
| BccI | CCATC | 3 cut(s) | 491, 607, 1195 |
| BciT130I | CCWGG | 2 cut(s) | 927, 935 |
| BcnI | CCSGG | 1 cut(s) | 116 |
| BfaI | CTAG | 3 cut(s) | 47, 677, 747 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfoI | RGCGCY | 1 cut(s) | 41 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 345, 743 |
| BlpI | GCTNAGC | 1 cut(s) | 369 |
| Bme1390I | CCNGG | 3 cut(s) | 116, 927, 935 |
| Bme18I | GGWCC | 1 cut(s) | 955 |
| BmeT110I | CYCGRG | 1 cut(s) | 149 |
| BmgT120I | GGNCC | 1 cut(s) | 955 |
| BmiI | GGNNCC | 2 cut(s) | 39, 638 |
| BmrFI | CCNGG | 3 cut(s) | 116, 927, 935 |
| BmsI | GCATC | 7 cut(s) | 40, 192, 277, 715, 958, 1006, 1138 |
| BpmI | CTGGAG | 1 cut(s) | 623 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 369 |
| BpuMI | CCSGG | 1 cut(s) | 116 |
| Bsa29I | ATCGAT | 1 cut(s) | 966 |
| BsaBI | GATNNNNATC | 1 cut(s) | 243 |
| BsaHI | GRCGYC | 1 cut(s) | 38 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 805, 993 |
| Bse1I | ACTGG | 3 cut(s) | 340, 508, 640 |
| Bse21I | CCTNAGG | 1 cut(s) | 882 |
| Bse8I | GATNNNNATC | 1 cut(s) | 243 |
| BseBI | CCWGG | 2 cut(s) | 927, 935 |
| BseCI | ATCGAT | 1 cut(s) | 966 |
| BseGI | GGATG | 1 cut(s) | 1021 |
| BseJI | GATNNNNATC | 1 cut(s) | 243 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 805, 993 |
| BseMII | CTCAG | 4 cut(s) | 383, 873, 969, 986 |
| BseNI | ACTGG | 3 cut(s) | 340, 508, 640 |
| BseRI | GAGGAG | 4 cut(s) | 641, 677, 698, 701 |
| BseXI | GCAGC | 8 cut(s) | 289, 292, 295, 298, 302, 317, 409, 715 |
| BsgI | GTGCAG | 2 cut(s) | 111, 841 |
| Bsh1236I | CGCG | 2 cut(s) | 185, 801 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1155 |
| BshFI | GGCC | 3 cut(s) | 388, 491, 602 |
| BshNI | GGYRCC | 1 cut(s) | 37 |
| BshVI | ATCGAT | 1 cut(s) | 966 |
| BsiEI | CGRYCG | 1 cut(s) | 1155 |
| BsiHKCI | CYCGRG | 1 cut(s) | 149 |
| BsiSI | CCGG | 1 cut(s) | 115 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 805, 993 |
| BsmI | GAATGC | 1 cut(s) | 327 |
| BsnI | GGCC | 3 cut(s) | 388, 491, 602 |
| BsoBI | CYCGRG | 1 cut(s) | 149 |
| Bsp143I | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 369 |
| BspACI | CCGC | 3 cut(s) | 81, 799, 1056 |
| BspANI | GGCC | 3 cut(s) | 388, 491, 602 |
| BspCNI | CTCAG | 4 cut(s) | 382, 874, 970, 985 |
| BspDI | ATCGAT | 1 cut(s) | 966 |
| BspFNI | CGCG | 2 cut(s) | 185, 801 |
| BspLI | GGNNCC | 2 cut(s) | 39, 638 |
| BspPI | GGATC | 2 cut(s) | 33, 894 |
| BspT107I | GGYRCC | 1 cut(s) | 37 |
| BsrI | ACTGG | 3 cut(s) | 340, 508, 640 |
| BssMI | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| BssNI | GRCGYC | 1 cut(s) | 38 |
| BssSI | CACGAG | 1 cut(s) | 732 |
| Bst2BI | CACGAG | 1 cut(s) | 732 |
| Bst2UI | CCWGG | 2 cut(s) | 927, 935 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 70, 702, 1088 |
| Bst6I | CTCTTC | 2 cut(s) | 675, 834 |
| BstACI | GRCGYC | 1 cut(s) | 38 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 1 cut(s) | 1048 |
| BstDEI | CTNAG | 6 cut(s) | 315, 369, 882, 890, 972, 978 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 991 |
| BstF5I | GGATG | 1 cut(s) | 1021 |
| BstFNI | CGCG | 2 cut(s) | 185, 801 |
| BstH2I | RGCGCY | 1 cut(s) | 41 |
| BstHHI | GCGC | 3 cut(s) | 40, 339, 916 |
| BstKTI | GATC | 4 cut(s) | 28, 247, 889, 1155 |
| BstMBI | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| BstMCI | CGRYCG | 1 cut(s) | 1155 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 89, 311, 345, 394, 725, 734, 743, 1056 |
| BstNI | CCWGG | 2 cut(s) | 927, 935 |
| BstNSI | RCATGY | 3 cut(s) | 260, 297, 518 |
| BstSCI | CCNGG | 3 cut(s) | 114, 925, 933 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstUI | CGCG | 2 cut(s) | 185, 801 |
| BstV1I | GCAGC | 8 cut(s) | 289, 292, 295, 298, 302, 317, 409, 715 |
| BstX2I | RGATCY | 1 cut(s) | 886 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1088 |
| BstYI | RGATCY | 1 cut(s) | 886 |
| Bsu15I | ATCGAT | 1 cut(s) | 966 |
| Bsu36I | CCTNAGG | 1 cut(s) | 882 |
| BsuRI | GGCC | 3 cut(s) | 388, 491, 602 |
| BsuTUI | ATCGAT | 1 cut(s) | 966 |
| BtgZI | GCGATG | 1 cut(s) | 575 |
| BtsCI | GGATG | 1 cut(s) | 1021 |
| BtsIMutI | CAGTG | 1 cut(s) | 1093 |
| Cac8I | GCNNGC | 1 cut(s) | 1048 |
| CaiI | CAGNNNCTG | 2 cut(s) | 311, 646 |
| CfoI | GCGC | 3 cut(s) | 40, 339, 916 |
| Cfr13I | GGNCC | 1 cut(s) | 955 |
| ClaI | ATCGAT | 1 cut(s) | 966 |
| CseI | GACGC | 1 cut(s) | 347 |
| Csp6I | GTAC | 1 cut(s) | 501 |
| CviAII | CATG | 5 cut(s) | 257, 294, 515, 593, 1051 |
| CviQI | GTAC | 1 cut(s) | 501 |
| DdeI | CTNAG | 6 cut(s) | 315, 369, 882, 890, 972, 978 |
| DinI | GGCGCC | 1 cut(s) | 39 |
| DpnI | GATC | 4 cut(s) | 27, 246, 888, 1154 |
| DpnII | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| EaeI | YGGCCR | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 2 cut(s) | 675, 834 |
| EarI | CTCTTC | 2 cut(s) | 675, 834 |
| Eco47I | GGWCC | 1 cut(s) | 955 |
| Eco57I | CTGAAG | 2 cut(s) | 741, 858 |
| Eco81I | CCTNAGG | 1 cut(s) | 882 |
| Eco88I | CYCGRG | 1 cut(s) | 149 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 991 |
| EcoRII | CCWGG | 2 cut(s) | 925, 933 |
| EcoT22I | ATGCAT | 1 cut(s) | 786 |
| EgeI | GGCGCC | 1 cut(s) | 39 |
| EheI | GGCGCC | 1 cut(s) | 39 |
| FaeI | CATG | 5 cut(s) | 260, 297, 518, 596, 1054 |
| FatI | CATG | 5 cut(s) | 256, 293, 514, 592, 1050 |
| FblI | GTMKAC | 2 cut(s) | 833, 983 |
| FokI | GGATG | 1 cut(s) | 1028 |
| FspBI | CTAG | 3 cut(s) | 47, 677, 747 |
| FspI | TGCGCA | 1 cut(s) | 915 |
| GlaI | GCGC | 3 cut(s) | 39, 338, 915 |
| GsuI | CTGGAG | 1 cut(s) | 623 |
| HaeII | RGCGCY | 1 cut(s) | 41 |
| HaeIII | GGCC | 3 cut(s) | 388, 491, 602 |
| HapII | CCGG | 1 cut(s) | 115 |
| HgaI | GACGC | 1 cut(s) | 347 |
| HhaI | GCGC | 3 cut(s) | 40, 339, 916 |
| Hin1I | GRCGYC | 1 cut(s) | 38 |
| Hin1II | CATG | 5 cut(s) | 260, 297, 518, 596, 1054 |
| Hin6I | GCGC | 3 cut(s) | 38, 337, 914 |
| HinP1I | GCGC | 3 cut(s) | 38, 337, 914 |
| HindIII | AAGCTT | 1 cut(s) | 851 |
| HinfI | GANTC | 3 cut(s) | 101, 980, 1039 |
| HpaII | CCGG | 1 cut(s) | 115 |
| HphI | GGTGA | 1 cut(s) | 454 |
| Hpy166II | GTNNAC | 3 cut(s) | 834, 955, 984 |
| Hpy188I | TCNGA | 5 cut(s) | 249, 363, 816, 975, 1147 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 521 |
| Hpy8I | GTNNAC | 3 cut(s) | 834, 955, 984 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 2 cut(s) | 64, 407 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 70, 702, 1088 |
| HpyCH4V | TGCA | 8 cut(s) | 92, 233, 290, 325, 397, 712, 784, 822 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 89, 311, 345, 394, 725, 734, 743, 1056 |
| HpyF3I | CTNAG | 6 cut(s) | 315, 369, 882, 890, 972, 978 |
| Hsp92I | GRCGYC | 1 cut(s) | 38 |
| Hsp92II | CATG | 5 cut(s) | 260, 297, 518, 596, 1054 |
| HspAI | GCGC | 3 cut(s) | 38, 337, 914 |
| KasI | GGCGCC | 1 cut(s) | 37 |
| Kzo9I | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| LmnI | GCTCC | 1 cut(s) | 642 |
| Lsp1109I | GCAGC | 8 cut(s) | 289, 292, 295, 298, 302, 317, 409, 715 |
| LweI | GCATC | 7 cut(s) | 40, 192, 277, 715, 958, 1006, 1138 |
| MaeI | CTAG | 3 cut(s) | 47, 677, 747 |
| MaeIII | GTNAC | 2 cut(s) | 655, 758 |
| MalI | GATC | 4 cut(s) | 27, 246, 888, 1154 |
| MboI | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| MboII | GAAGA | 4 cut(s) | 692, 734, 803, 851 |
| MflI | RGATCY | 1 cut(s) | 886 |
| MlsI | TGGCCA | 1 cut(s) | 602 |
| MluCI | AATT | 4 cut(s) | 18, 42, 126, 620 |
| MluNI | TGGCCA | 1 cut(s) | 602 |
| Mly113I | GGCGCC | 1 cut(s) | 38 |
| MlyI | GAGTC | 3 cut(s) | 110, 989, 1048 |
| Mox20I | TGGCCA | 1 cut(s) | 602 |
| Mph1103I | ATGCAT | 1 cut(s) | 786 |
| MscI | TGGCCA | 1 cut(s) | 602 |
| MseI | TTAA | 5 cut(s) | 270, 474, 552, 704, 755 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1086 |
| Msp20I | TGGCCA | 1 cut(s) | 602 |
| MspA1I | CMGCKG | 1 cut(s) | 308 |
| MspI | CCGG | 1 cut(s) | 115 |
| MspR9I | CCNGG | 3 cut(s) | 116, 927, 935 |
| Mva1269I | GAATGC | 1 cut(s) | 327 |
| MvaI | CCWGG | 2 cut(s) | 927, 935 |
| MvnI | CGCG | 2 cut(s) | 185, 801 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 89, 311, 345, 394, 725, 734, 743, 1056 |
| NarI | GGCGCC | 1 cut(s) | 38 |
| NciI | CCSGG | 1 cut(s) | 116 |
| NdeII | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| NlaIII | CATG | 5 cut(s) | 260, 297, 518, 596, 1054 |
| NlaIV | GGNNCC | 2 cut(s) | 39, 638 |
| NsbI | TGCGCA | 1 cut(s) | 915 |
| NsiI | ATGCAT | 1 cut(s) | 786 |
| NspI | RCATGY | 3 cut(s) | 260, 297, 518 |
| OliI | CACNNNNGTG | 1 cut(s) | 1086 |
| PaeR7I | CTCGAG | 1 cut(s) | 149 |
| PciI | ACATGT | 2 cut(s) | 256, 514 |
| PctI | GAATGC | 1 cut(s) | 327 |
| PflFI | GACNNNGTC | 1 cut(s) | 979 |
| Ple19I | CGATCG | 1 cut(s) | 1155 |
| PleI | GAGTC | 3 cut(s) | 109, 988, 1047 |
| PluTI | GGCGCC | 1 cut(s) | 41 |
| PpsI | GAGTC | 3 cut(s) | 109, 988, 1047 |
| PscI | ACATGT | 2 cut(s) | 256, 514 |
| PsiI | TTATAA | 1 cut(s) | 438 |
| Psp6I | CCWGG | 2 cut(s) | 925, 933 |
| PspGI | CCWGG | 2 cut(s) | 925, 933 |
| PspN4I | GGNNCC | 2 cut(s) | 39, 638 |
| PspPI | GGNCC | 1 cut(s) | 955 |
| PspXI | VCTCGAGB | 1 cut(s) | 149 |
| PstNI | CAGNNNCTG | 2 cut(s) | 311, 646 |
| PsuI | RGATCY | 1 cut(s) | 886 |
| PsyI | GACNNNGTC | 1 cut(s) | 979 |
| PvuI | CGATCG | 1 cut(s) | 1155 |
| PvuII | CAGCTG | 1 cut(s) | 308 |
| RsaI | GTAC | 1 cut(s) | 502 |
| RsaNI | GTAC | 1 cut(s) | 501 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SaqAI | TTAA | 5 cut(s) | 270, 474, 552, 704, 755 |
| Sau3AI | GATC | 4 cut(s) | 25, 244, 886, 1152 |
| Sau96I | GGNCC | 1 cut(s) | 955 |
| SchI | GAGTC | 3 cut(s) | 110, 989, 1048 |
| ScrFI | CCNGG | 3 cut(s) | 116, 927, 935 |
| SfaNI | GCATC | 7 cut(s) | 40, 192, 277, 715, 958, 1006, 1138 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| SfoI | GGCGCC | 1 cut(s) | 39 |
| Sfr274I | CTCGAG | 1 cut(s) | 149 |
| SinI | GGWCC | 1 cut(s) | 955 |
| SlaI | CTCGAG | 1 cut(s) | 149 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| Sse9I | AATT | 4 cut(s) | 18, 42, 126, 620 |
| SsiI | CCGC | 3 cut(s) | 81, 799, 1056 |
| SspDI | GGCGCC | 1 cut(s) | 37 |
| SspMI | CTAG | 3 cut(s) | 47, 677, 747 |
| StyD4I | CCNGG | 3 cut(s) | 114, 925, 933 |
| TaaI | ACNGT | 4 cut(s) | 62, 70, 702, 1088 |
| TaqI | TCGA | 3 cut(s) | 57, 150, 966 |
| TasI | AATT | 4 cut(s) | 18, 42, 126, 620 |
| TauI | GCSGC | 2 cut(s) | 83, 1059 |
| Tru1I | TTAA | 5 cut(s) | 270, 474, 552, 704, 755 |
| Tru9I | TTAA | 5 cut(s) | 270, 474, 552, 704, 755 |
| TscAI | CASTG | 1 cut(s) | 1093 |
| TseI | GCWGC | 8 cut(s) | 277, 280, 290, 305, 308, 311, 397, 728 |
| TspDTI | ATGAA | 3 cut(s) | 138, 578, 581 |
| TspGWI | ACGGA | 1 cut(s) | 674 |
| TspRI | CASTG | 1 cut(s) | 1093 |
| Tth111I | GACNNNGTC | 1 cut(s) | 979 |
| VpaK11BI | GGWCC | 1 cut(s) | 955 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 991 |
| XapI | RAATTY | 2 cut(s) | 126, 620 |
| XbaI | TCTAGA | 1 cut(s) | 46 |
| XceI | RCATGY | 3 cut(s) | 260, 297, 518 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 610 |
| XhoI | CTCGAG | 1 cut(s) | 149 |
| XmiI | GTMKAC | 2 cut(s) | 833, 983 |
| XspI | CTAG | 3 cut(s) | 47, 677, 747 |
| Zsp2I | ATGCAT | 1 cut(s) | 786 |