MD01G1111300.v1.1

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
22383221 .. 22386660
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1111300.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGCTTTAGCAAAAACAATTATGGATCAAATGGAGGCGCCAATTCTAGATGCCTTCGACGGTGGAACAGTAGATTTTGCCGCCAATGGTGCAGAAGCAGAGTCTTTCAAGCACCGGGTTGATGAAATTTTCGTAAATGTTGATAAGCTCGAGGAAAGAGTGAATGACATAGAGCAGTTTTACGCGACTACGAGTAAAAAGATGCCAAATGCGTGTAAAAGTAGCTCAACTGCAAAGGATAAAGATCAGACAAAACATGTTCCAAGTATTAAGAAGCAGCAGCAAGATGCAGCATGTAGGGAAGCAGCTGCTGCTAAGAGAATGCAGGAACTTATGCGCCAGTTTGGCACGATATTGCGTCAGATTGCTCAGCACAAGTGGGCGTGGCCTTTTTTGCAGCCTGTAGATGTAGAAGGTCTTGGTTTAGATGACTATTATAAGGTGATTGACAAACCAATGGATTTAGGCACTATTAAAAATCAAATGGAGGCCAAAGATGGTACTGGATATAAACATGTTCGGGAGATATTTGCTGATGTGAGGTTGGTTTTTAAAAATGCGATGAAGTATAATGATGACAGAAGTGATGTTCATGTTATGGCCAAAACTTTGATGGCAAAATTTGAGGAGAAGTGGCTCCAGTTTCTGCCTAAAGTTACGGAGGAGGAAAAAAGGCTAGAAGAGGAGGAGGCAGAAGCACAGTTAAATATGCAACTTGCTGAAGATGCTGCTCGTGCCAAAATGGCTAGAGATTTAAGTAACGAGCTTTATGAGATTGATATGCATTTGGAAGAACTCCGCGAAATGGTTGTTCAGAAGTGCAGAAAAATGTCTACTGAAGAGAAGCGAAAGCTTGGGGTAGCCCTTACCAGATTGTCGCCTGAGGATCTTAGCAAGGCATTGGAGATTGTTGCGCAAAGTAATCCAGGTTTCCAGGCTACTGCCGATGAGGTGGACCTTGACATCGATGCTCAGACTGAGTCTACCTTGTGGAGGTTGAAGTTTTTTGTGAGGGATGCTATTGAAGTTCAAAGCAAGAGTCCAGCAAGCATGGGCGGCAACACCAACAACGCTAATAACCACAACAGTGGAAACAAAACTAACAACATCAGCAACGCTACTAATAAGCGAAAAAGAGAGATTTCTGATGCGATCGTCAAAACTGCCAAGAAAAAGAGTAAAAAGCCATCTCCTTGA

Protein Analysis

399

Amino Acids

45.11

Weight (kDa)

6.09

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 117 - 202 2.7e-17 Bromodomain
BET PF17035 276 - 338 7.3e-19 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
Acc16I TGCGCA 1 cut(s) 915
AccB1I GGYRCC 1 cut(s) 37
AccI GTMKAC 2 cut(s) 833, 983
AccII CGCG 2 cut(s) 185, 801
AciI CCGC 3 cut(s) 81, 799, 1056
AclWI GGATC 2 cut(s) 33, 894
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 2 cut(s) 126, 620
AcuI CTGAAG 2 cut(s) 741, 858
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 2 cut(s) 805, 993
AflIII ACRYGT 2 cut(s) 256, 514
AgsI TTSAA 4 cut(s) 109, 1000, 1025, 1031
AjnI CCWGG 2 cut(s) 925, 933
AleI CACNNNNGTG 1 cut(s) 1086
AluBI AGCT 5 cut(s) 148, 225, 308, 766, 853
AluI AGCT 5 cut(s) 148, 225, 308, 766, 853
AlwI GGATC 2 cut(s) 33, 894
AlwNI CAGNNNCTG 2 cut(s) 311, 646
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 3 cut(s) 386, 489, 600
ApeKI GCWGC 8 cut(s) 277, 280, 290, 305, 308, 311, 397, 728
ApoI RAATTY 2 cut(s) 126, 620
ArsI GACNNNNNNTTYG 2 cut(s) 1024, 1056
AspLEI GCGC 3 cut(s) 40, 339, 916
AspS9I GGNCC 1 cut(s) 955
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 955
AxyI CCTNAGG 1 cut(s) 882
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 732
BbvI GCAGC 8 cut(s) 289, 292, 295, 298, 302, 317, 409, 715
BccI CCATC 3 cut(s) 491, 607, 1195
BciT130I CCWGG 2 cut(s) 927, 935
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 3 cut(s) 47, 677, 747
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 41
BglI GCCNNNNNGGC 2 cut(s) 345, 743
BlpI GCTNAGC 1 cut(s) 369
Bme1390I CCNGG 3 cut(s) 116, 927, 935
Bme18I GGWCC 1 cut(s) 955
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 955
BmiI GGNNCC 2 cut(s) 39, 638
BmrFI CCNGG 3 cut(s) 116, 927, 935
BmsI GCATC 7 cut(s) 40, 192, 277, 715, 958, 1006, 1138
BpmI CTGGAG 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 805, 993
Bse1I ACTGG 3 cut(s) 340, 508, 640
Bse21I CCTNAGG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 2 cut(s) 927, 935
BseCI ATCGAT 1 cut(s) 966
BseGI GGATG 1 cut(s) 1021
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 805, 993
BseMII CTCAG 4 cut(s) 383, 873, 969, 986
BseNI ACTGG 3 cut(s) 340, 508, 640
BseRI GAGGAG 4 cut(s) 641, 677, 698, 701
BseXI GCAGC 8 cut(s) 289, 292, 295, 298, 302, 317, 409, 715
BsgI GTGCAG 2 cut(s) 111, 841
Bsh1236I CGCG 2 cut(s) 185, 801
Bsh1285I CGRYCG 1 cut(s) 1155
BshFI GGCC 3 cut(s) 388, 491, 602
BshNI GGYRCC 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 966
BsiEI CGRYCG 1 cut(s) 1155
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 805, 993
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 3 cut(s) 388, 491, 602
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 4 cut(s) 25, 244, 886, 1152
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 3 cut(s) 81, 799, 1056
BspANI GGCC 3 cut(s) 388, 491, 602
BspCNI CTCAG 4 cut(s) 382, 874, 970, 985
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 2 cut(s) 185, 801
BspLI GGNNCC 2 cut(s) 39, 638
BspPI GGATC 2 cut(s) 33, 894
BspT107I GGYRCC 1 cut(s) 37
BsrI ACTGG 3 cut(s) 340, 508, 640
BssMI GATC 4 cut(s) 25, 244, 886, 1152
BssNI GRCGYC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 927, 935
Bst4CI ACNGT 4 cut(s) 62, 70, 702, 1088
Bst6I CTCTTC 2 cut(s) 675, 834
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 1048
BstDEI CTNAG 6 cut(s) 315, 369, 882, 890, 972, 978
BstENI CCTNNNNNAGG 1 cut(s) 991
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 2 cut(s) 185, 801
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 3 cut(s) 40, 339, 916
BstKTI GATC 4 cut(s) 28, 247, 889, 1155
BstMBI GATC 4 cut(s) 25, 244, 886, 1152
BstMCI CGRYCG 1 cut(s) 1155
BstMWI GCNNNNNNNGC 8 cut(s) 89, 311, 345, 394, 725, 734, 743, 1056
BstNI CCWGG 2 cut(s) 927, 935
BstNSI RCATGY 3 cut(s) 260, 297, 518
BstSCI CCNGG 3 cut(s) 114, 925, 933
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 2 cut(s) 185, 801
BstV1I GCAGC 8 cut(s) 289, 292, 295, 298, 302, 317, 409, 715
BstX2I RGATCY 1 cut(s) 886
BstXI CCANNNNNNTGG 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 886
Bsu15I ATCGAT 1 cut(s) 966
Bsu36I CCTNAGG 1 cut(s) 882
BsuRI GGCC 3 cut(s) 388, 491, 602
BsuTUI ATCGAT 1 cut(s) 966
BtgZI GCGATG 1 cut(s) 575
BtsCI GGATG 1 cut(s) 1021
BtsIMutI CAGTG 1 cut(s) 1093
Cac8I GCNNGC 1 cut(s) 1048
CaiI CAGNNNCTG 2 cut(s) 311, 646
CfoI GCGC 3 cut(s) 40, 339, 916
Cfr13I GGNCC 1 cut(s) 955
ClaI ATCGAT 1 cut(s) 966
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 501
CviAII CATG 5 cut(s) 257, 294, 515, 593, 1051
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 6 cut(s) 315, 369, 882, 890, 972, 978
DinI GGCGCC 1 cut(s) 39
DpnI GATC 4 cut(s) 27, 246, 888, 1154
DpnII GATC 4 cut(s) 25, 244, 886, 1152
DraI TTTAAA 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 2 cut(s) 675, 834
EarI CTCTTC 2 cut(s) 675, 834
Eco47I GGWCC 1 cut(s) 955
Eco57I CTGAAG 2 cut(s) 741, 858
Eco81I CCTNAGG 1 cut(s) 882
Eco88I CYCGRG 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 925, 933
EcoT22I ATGCAT 1 cut(s) 786
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
FaeI CATG 5 cut(s) 260, 297, 518, 596, 1054
FatI CATG 5 cut(s) 256, 293, 514, 592, 1050
FblI GTMKAC 2 cut(s) 833, 983
FokI GGATG 1 cut(s) 1028
FspBI CTAG 3 cut(s) 47, 677, 747
FspI TGCGCA 1 cut(s) 915
GlaI GCGC 3 cut(s) 39, 338, 915
GsuI CTGGAG 1 cut(s) 623
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 388, 491, 602
HapII CCGG 1 cut(s) 115
HgaI GACGC 1 cut(s) 347
HhaI GCGC 3 cut(s) 40, 339, 916
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 5 cut(s) 260, 297, 518, 596, 1054
Hin6I GCGC 3 cut(s) 38, 337, 914
HinP1I GCGC 3 cut(s) 38, 337, 914
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 3 cut(s) 101, 980, 1039
HpaII CCGG 1 cut(s) 115
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 3 cut(s) 834, 955, 984
Hpy188I TCNGA 5 cut(s) 249, 363, 816, 975, 1147
Hpy188III TCNNGA 2 cut(s) 47, 521
Hpy8I GTNNAC 3 cut(s) 834, 955, 984
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 64, 407
HpyCH4III ACNGT 4 cut(s) 62, 70, 702, 1088
HpyCH4V TGCA 8 cut(s) 92, 233, 290, 325, 397, 712, 784, 822
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 311, 345, 394, 725, 734, 743, 1056
HpyF3I CTNAG 6 cut(s) 315, 369, 882, 890, 972, 978
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 5 cut(s) 260, 297, 518, 596, 1054
HspAI GCGC 3 cut(s) 38, 337, 914
KasI GGCGCC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 25, 244, 886, 1152
LmnI GCTCC 1 cut(s) 642
Lsp1109I GCAGC 8 cut(s) 289, 292, 295, 298, 302, 317, 409, 715
LweI GCATC 7 cut(s) 40, 192, 277, 715, 958, 1006, 1138
MaeI CTAG 3 cut(s) 47, 677, 747
MaeIII GTNAC 2 cut(s) 655, 758
MalI GATC 4 cut(s) 27, 246, 888, 1154
MboI GATC 4 cut(s) 25, 244, 886, 1152
MboII GAAGA 4 cut(s) 692, 734, 803, 851
MflI RGATCY 1 cut(s) 886
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 4 cut(s) 18, 42, 126, 620
MluNI TGGCCA 1 cut(s) 602
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 3 cut(s) 110, 989, 1048
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 786
MscI TGGCCA 1 cut(s) 602
MseI TTAA 5 cut(s) 270, 474, 552, 704, 755
MslI CAYNNNNRTG 1 cut(s) 1086
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 3 cut(s) 116, 927, 935
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 2 cut(s) 927, 935
MvnI CGCG 2 cut(s) 185, 801
MwoI GCNNNNNNNGC 8 cut(s) 89, 311, 345, 394, 725, 734, 743, 1056
NarI GGCGCC 1 cut(s) 38
NciI CCSGG 1 cut(s) 116
NdeII GATC 4 cut(s) 25, 244, 886, 1152
NlaIII CATG 5 cut(s) 260, 297, 518, 596, 1054
NlaIV GGNNCC 2 cut(s) 39, 638
NsbI TGCGCA 1 cut(s) 915
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 3 cut(s) 260, 297, 518
OliI CACNNNNGTG 1 cut(s) 1086
PaeR7I CTCGAG 1 cut(s) 149
PciI ACATGT 2 cut(s) 256, 514
PctI GAATGC 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 979
Ple19I CGATCG 1 cut(s) 1155
PleI GAGTC 3 cut(s) 109, 988, 1047
PluTI GGCGCC 1 cut(s) 41
PpsI GAGTC 3 cut(s) 109, 988, 1047
PscI ACATGT 2 cut(s) 256, 514
PsiI TTATAA 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 925, 933
PspGI CCWGG 2 cut(s) 925, 933
PspN4I GGNNCC 2 cut(s) 39, 638
PspPI GGNCC 1 cut(s) 955
PspXI VCTCGAGB 1 cut(s) 149
PstNI CAGNNNCTG 2 cut(s) 311, 646
PsuI RGATCY 1 cut(s) 886
PsyI GACNNNGTC 1 cut(s) 979
PvuI CGATCG 1 cut(s) 1155
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 1086
SaqAI TTAA 5 cut(s) 270, 474, 552, 704, 755
Sau3AI GATC 4 cut(s) 25, 244, 886, 1152
Sau96I GGNCC 1 cut(s) 955
SchI GAGTC 3 cut(s) 110, 989, 1048
ScrFI CCNGG 3 cut(s) 116, 927, 935
SfaNI GCATC 7 cut(s) 40, 192, 277, 715, 958, 1006, 1138
SfcI CTRYAG 1 cut(s) 402
SfoI GGCGCC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 955
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 4 cut(s) 18, 42, 126, 620
SsiI CCGC 3 cut(s) 81, 799, 1056
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 3 cut(s) 47, 677, 747
StyD4I CCNGG 3 cut(s) 114, 925, 933
TaaI ACNGT 4 cut(s) 62, 70, 702, 1088
TaqI TCGA 3 cut(s) 57, 150, 966
TasI AATT 4 cut(s) 18, 42, 126, 620
TauI GCSGC 2 cut(s) 83, 1059
Tru1I TTAA 5 cut(s) 270, 474, 552, 704, 755
Tru9I TTAA 5 cut(s) 270, 474, 552, 704, 755
TscAI CASTG 1 cut(s) 1093
TseI GCWGC 8 cut(s) 277, 280, 290, 305, 308, 311, 397, 728
TspDTI ATGAA 3 cut(s) 138, 578, 581
TspGWI ACGGA 1 cut(s) 674
TspRI CASTG 1 cut(s) 1093
Tth111I GACNNNGTC 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 955
XagI CCTNNNNNAGG 1 cut(s) 991
XapI RAATTY 2 cut(s) 126, 620
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 3 cut(s) 260, 297, 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 149
XmiI GTMKAC 2 cut(s) 833, 983
XspI CTAG 3 cut(s) 47, 677, 747
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.