Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

32182208 .. 32188198

Gene Structure 5991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1224000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATGGAGCCAGCAAGTTCATCAAACCCAGATTTTACAAGTGTTGATGGTGCAGCTGTAGTGGAGGGATTTGATCATTCTGTTGATGAGATTTCTGCAAAGGTCGATACGCTTGAGAAAAGAGTGAATGAGGTGGAACGGTTTTACTTGACTACGGGAAATCCGCATCTACCCACTTCAAAAGGTGTTGCAGTTGTGAAGGATAAACAGCTAACTGCTTCTAAGAAGCAGCAGCAAGATGCATCACGTAGGGAAGCCGCTGCTACAAAGAGAATGCAAGAGCTTATGCGCCAATTTTCTGCAATGTTCCGTCAGATCACTAAGCTTGAATGGGCGTGGCCCTTTATGAATCCTGTAGATGTTGAAGGTCTGGGATTGCATGACTATTATCAAGTCATTGAGAAGCCCATGGACCTTGGTACCATAAAAAATAGAATGGAAGCCAAGGATGGTAGTGAGTATAAGAATGTCAGGGAGATATATGCTGATGTGAGGCTGGTTTTCAAGAATGCAATGAAATATAATGATGAAGGTGAGGATGTCTATGTGATGGCCCAATCGTTGTTGCAAAAATTCGAAGAAAAATGGCTAAAGCTTCTGCCTAAAGTTGTTGAAGAGGAAACAAGACGAGCAGACGAGGAAGCAGAGGCACGGCGAAACATGCAACTATCTCAGGATGCTGCATATGCCAGCACAGCTAAGGATCTAAGCAATGAGCTTTTTGAGATTGATGTGTATTTGAGGAACCTTAGACAAACAGTGGTTCAGAAGTGCAGGAAAATGTCTTCGGATGATAAAAGAAAACTCGGGACAGCTCTCTCGCAGTTATCTGCCGAAGATCTCAGCAAGGCTCTAGAAATTGTTGCACAGAGTAACCCCAACTTCCAAGCAACTGCGCAAGAAGTGGATCTTGACATTGATGCTCAGAATGAATGCACATTATGGAGGTTAAAGGTTTTTGTAAAGGAGGCACTAAAAGTTCAGGGGAAAAGTCCCGAAGCCATTGGCGGAAAAGTCCAGGGGAAGATTTCTGAAGCCATTGGCGGCAACAAAGTTGCAGGCTCGAAACGGAATAGAGAGATTTGTGATACTCTTGCGAAGACTGCCGTAAGGAGGACCAAAAAGATCTCCAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

380

Amino Acids

42.82

Weight (kDa)

6.89

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	100 - 186	2.5e-19	Bromodomain
BET	PF17035	260 - 323	6.4e-16	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	897
Acc65I	GGTACC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	419
AciI	CCGC	4 cut(s)	164, 258, 1008, 1044
AclWI	GGATC	2 cut(s)	711, 915
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	1113
AgsI	TTSAA	5 cut(s)	180, 329, 365, 505, 614
AjnI	CCWGG	1 cut(s)	1017
AluBI	AGCT	8 cut(s)	56, 211, 283, 325, 595, 698, 718, 815
AluI	AGCT	8 cut(s)	56, 211, 283, 325, 595, 698, 718, 815
AlwI	GGATC	2 cut(s)	711, 915
Ama87I	CYCGRG	1 cut(s)	806
AoxI	GGCC	2 cut(s)	338, 552
ApeKI	GCWGC	5 cut(s)	53, 229, 232, 260, 680
ApoI	RAATTY	1 cut(s)	572
Asp718I	GGTACC	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	291, 898
AspS9I	GGNCC	4 cut(s)	339, 412, 553, 1116
AsuHPI	GGTGA	1 cut(s)	545
AsuII	TTCGAA	1 cut(s)	576
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	2 cut(s)	412, 1116
BaeI	ACNNNNGTAYC	2 cut(s)	403, 436
BanI	GGYRCC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	777, 1106
BbvI	GCAGC	5 cut(s)	65, 241, 244, 247, 667
BccI	CCATC	3 cut(s)	41, 443, 544
BceAI	ACGGC	2 cut(s)	668, 1091
BciT130I	CCWGG	1 cut(s)	1019
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	1 cut(s)	854
BfmI	CTRYAG	2 cut(s)	57, 354
BglII	AGATCT	2 cut(s)	838, 1125
BisI	GCNGC	7 cut(s)	54, 230, 233, 258, 261, 681, 1045
BlsI	GCNGC	7 cut(s)	55, 231, 234, 259, 262, 682, 1046
Bme1390I	CCNGG	1 cut(s)	1019
Bme18I	GGWCC	2 cut(s)	412, 1116
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	4 cut(s)	339, 412, 553, 1116
BmiI	GGNNCC	3 cut(s)	9, 421, 746
BmrFI	CCNGG	1 cut(s)	1019
BmsI	GCATC	5 cut(s)	175, 229, 251, 667, 910
BpiI	GAAGAC	2 cut(s)	777, 1106
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	408, 415, 444, 1018
Bsc4I	CCNNNNNNNGG	1 cut(s)	1113
Bse3DI	GCAATG	3 cut(s)	309, 519, 718
BseBI	CCWGG	1 cut(s)	1019
BseDI	CCNNGG	4 cut(s)	408, 415, 444, 1018
BseGI	GGATG	4 cut(s)	454, 544, 682, 796
BseLI	CCNNNNNNNGG	1 cut(s)	1113
BseMI	GCAATG	3 cut(s)	309, 519, 718
BseMII	CTCAG	3 cut(s)	686, 856, 938
BseXI	GCAGC	5 cut(s)	65, 241, 244, 247, 667
BsgI	GTGCAG	2 cut(s)	72, 793
BshFI	GGCC	2 cut(s)	340, 554
BshNI	GGYRCC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	806
BslFI	GGGAC	2 cut(s)	823, 978
BslI	CCNNNNNNNGG	1 cut(s)	1113
BsmFI	GGGAC	2 cut(s)	823, 978
BsmI	GAATGC	3 cut(s)	279, 514, 938
BsnI	GGCC	2 cut(s)	340, 554
BsoBI	CYCGRG	1 cut(s)	806
Bsp119I	TTCGAA	1 cut(s)	576
Bsp143I	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	4 cut(s)	164, 258, 1008, 1044
BspANI	GGCC	2 cut(s)	340, 554
BspCNI	CTCAG	3 cut(s)	685, 855, 937
BspLI	GGNNCC	3 cut(s)	9, 421, 746
BspPI	GGATC	2 cut(s)	711, 915
BspT104I	TTCGAA	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	3 cut(s)	309, 519, 718
BssECI	CCNNGG	4 cut(s)	408, 415, 444, 1018
BssMI	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
BssT1I	CCWWGG	3 cut(s)	408, 415, 444
Bst2UI	CCWGG	1 cut(s)	1019
Bst4CI	ACNGT	2 cut(s)	141, 760
Bst6I	CTCTTC	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	3 cut(s)	12, 691, 1060
BstDEI	CTNAG	8 cut(s)	222, 321, 672, 699, 707, 749, 842, 924
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	454, 544, 682, 796
BstHHI	GCGC	2 cut(s)	291, 898
BstKTI	GATC	6 cut(s)	76, 318, 706, 841, 910, 1128
BstMBI	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
BstMWI	GCNNNNNNNGC	4 cut(s)	661, 686, 695, 1103
BstNI	CCWGG	1 cut(s)	1019
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	1017
BstSFI	CTRYAG	2 cut(s)	57, 354
BstV1I	GCAGC	5 cut(s)	65, 241, 244, 247, 667
BstV2I	GAAGAC	2 cut(s)	777, 1106
BstX2I	RGATCY	4 cut(s)	703, 838, 907, 1125
BstYI	RGATCY	4 cut(s)	703, 838, 907, 1125
BsuRI	GGCC	2 cut(s)	340, 554
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	454, 544, 682, 796
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	3 cut(s)	12, 691, 1060
CfoI	GCGC	2 cut(s)	291, 898
Cfr13I	GGNCC	4 cut(s)	339, 412, 553, 1116
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	3 cut(s)	380, 409, 661
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	8 cut(s)	222, 321, 672, 699, 707, 749, 842, 924
DpnI	GATC	6 cut(s)	75, 317, 705, 840, 909, 1127
DpnII	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	1023
Eco130I	CCWWGG	3 cut(s)	408, 415, 444
Eco47I	GGWCC	2 cut(s)	412, 1116
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	1 cut(s)	806
EcoRII	CCWGG	1 cut(s)	1017
EcoT14I	CCWWGG	3 cut(s)	408, 415, 444
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	3 cut(s)	408, 415, 444
FaeI	CATG	3 cut(s)	383, 412, 664
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	2 cut(s)	823, 978
FatI	CATG	3 cut(s)	379, 408, 660
FauNDI	CATATG	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	7 cut(s)	54, 230, 233, 258, 261, 681, 1045
FokI	GGATG	4 cut(s)	461, 551, 689, 803
Fsp4HI	GCNGC	7 cut(s)	54, 230, 233, 258, 261, 681, 1045
FspBI	CTAG	1 cut(s)	854
FspI	TGCGCA	1 cut(s)	897
GlaI	GCGC	2 cut(s)	290, 897
GluI	GCNGC	7 cut(s)	54, 230, 233, 258, 261, 681, 1045
HaeIII	GGCC	2 cut(s)	340, 554
HhaI	GCGC	2 cut(s)	291, 898
Hin1II	CATG	3 cut(s)	383, 412, 664
Hin6I	GCGC	2 cut(s)	289, 896
HinP1I	GCGC	2 cut(s)	289, 896
HindIII	AAGCTT	2 cut(s)	323, 593
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	545
Hpy188I	TCNGA	5 cut(s)	315, 768, 790, 927, 1033
Hpy188III	TCNNGA	6 cut(s)	505, 674, 808, 854, 911, 995
HpyAV	CCTTC	3 cut(s)	193, 359, 524
HpyCH4III	ACNGT	2 cut(s)	141, 760
HpyCH4IV	ACGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	661, 686, 695, 1103
HpyF3I	CTNAG	8 cut(s)	222, 321, 672, 699, 707, 749, 842, 924
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	383, 412, 664
HspAI	GCGC	2 cut(s)	289, 896
KpnI	GGTACC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	5 cut(s)	65, 241, 244, 247, 667
LweI	GCATC	5 cut(s)	175, 229, 251, 667, 910
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	6 cut(s)	75, 317, 705, 840, 909, 1127
MboI	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
MboII	GAAGA	6 cut(s)	590, 626, 777, 848, 1036, 1111
MflI	RGATCY	4 cut(s)	703, 838, 907, 1125
MluCI	AATT	3 cut(s)	293, 572, 858
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	1 cut(s)	950
MspA1I	CMGCKG	2 cut(s)	56, 260
MspR9I	CCNGG	1 cut(s)	1019
Mva1269I	GAATGC	3 cut(s)	279, 514, 938
MvaI	CCWGG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	4 cut(s)	661, 686, 695, 1103
NcoI	CCATGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
NlaIII	CATG	3 cut(s)	383, 412, 664
NlaIV	GGNNCC	3 cut(s)	9, 421, 746
NsbI	TGCGCA	1 cut(s)	897
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	1 cut(s)	664
NspV	TTCGAA	1 cut(s)	576
PctI	GAATGC	3 cut(s)	279, 514, 938
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	7 cut(s)	55, 231, 234, 259, 262, 682, 1046
Ppu21I	YACGTR	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	1017
PspGI	CCWGG	1 cut(s)	1017
PspN4I	GGNNCC	3 cut(s)	9, 421, 746
PspPI	GGNCC	4 cut(s)	339, 412, 553, 1116
PsuI	RGATCY	4 cut(s)	703, 838, 907, 1125
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	950
SatI	GCNGC	7 cut(s)	54, 230, 233, 258, 261, 681, 1045
Sau3AI	GATC	6 cut(s)	73, 315, 703, 838, 907, 1125
Sau96I	GGNCC	4 cut(s)	339, 412, 553, 1116
ScrFI	CCNGG	1 cut(s)	1019
SfaNI	GCATC	5 cut(s)	175, 229, 251, 667, 910
SfcI	CTRYAG	2 cut(s)	57, 354
SfuI	TTCGAA	1 cut(s)	576
SinI	GGWCC	2 cut(s)	412, 1116
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	293, 572, 858
SsiI	CCGC	4 cut(s)	164, 258, 1008, 1044
SspMI	CTAG	1 cut(s)	854
StyD4I	CCNGG	1 cut(s)	1017
StyI	CCWWGG	3 cut(s)	408, 415, 444
TaaI	ACNGT	2 cut(s)	141, 760
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	105, 576, 1064
TasI	AATT	3 cut(s)	293, 572, 858
TauI	GCSGC	2 cut(s)	260, 1047
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	950
Tru9I	TTAA	1 cut(s)	950
TscAI	CASTG	1 cut(s)	765
TseI	GCWGC	5 cut(s)	53, 229, 232, 260, 680
TspDTI	ATGAA	5 cut(s)	9, 362, 530, 543, 945
TspGWI	ACGGA	2 cut(s)	299, 1084
TspRI	CASTG	1 cut(s)	765
VpaK11BI	GGWCC	2 cut(s)	412, 1116
XapI	RAATTY	1 cut(s)	572
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	664
XspI	CTAG	1 cut(s)	854
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.