Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 38, 237, 279 |
| AcsI | RAATTY | 1 cut(s) | 75 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 165 |
| AgsI | TTSAA | 2 cut(s) | 268, 344 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| AoxI | GGCC | 1 cut(s) | 317 |
| ApeKI | GCWGC | 3 cut(s) | 221, 239, 242 |
| ApoI | RAATTY | 1 cut(s) | 75 |
| AspS9I | GGNCC | 1 cut(s) | 318 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BbvI | GCAGC | 3 cut(s) | 226, 229, 233 |
| BfaI | CTAG | 1 cut(s) | 24 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BglII | AGATCT | 1 cut(s) | 259 |
| BisI | GCNGC | 5 cut(s) | 39, 222, 237, 240, 243 |
| BlsI | GCNGC | 5 cut(s) | 40, 223, 238, 241, 244 |
| BmgT120I | GGNCC | 1 cut(s) | 318 |
| BmsI | GCATC | 2 cut(s) | 208, 217 |
| BpuEI | CTTGAG | 2 cut(s) | 119, 154 |
| BsaAI | YACGTR | 1 cut(s) | 227 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 165 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 165 |
| BseMII | CTCAG | 1 cut(s) | 314 |
| BseXI | GCAGC | 3 cut(s) | 226, 229, 233 |
| BshFI | GGCC | 1 cut(s) | 319 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 165 |
| BsmI | GAATGC | 1 cut(s) | 258 |
| BsnI | GGCC | 1 cut(s) | 319 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| Bsp143I | GATC | 2 cut(s) | 259, 294 |
| BspACI | CCGC | 3 cut(s) | 38, 237, 279 |
| BspANI | GGCC | 1 cut(s) | 319 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BssMI | GATC | 2 cut(s) | 259, 294 |
| BstBAI | YACGTR | 1 cut(s) | 227 |
| BstDEI | CTNAG | 1 cut(s) | 300 |
| BstKTI | GATC | 2 cut(s) | 262, 297 |
| BstMBI | GATC | 2 cut(s) | 259, 294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 3 cut(s) | 226, 229, 233 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BsuRI | GGCC | 1 cut(s) | 319 |
| Cfr13I | GGNCC | 1 cut(s) | 318 |
| CviAII | CATG | 1 cut(s) | 315 |
| CviJI | RGCY | 3 cut(s) | 41, 236, 319 |
| CviKI_1 | RGCY | 3 cut(s) | 41, 236, 319 |
| DdeI | CTNAG | 1 cut(s) | 300 |
| DpnI | GATC | 2 cut(s) | 261, 296 |
| DpnII | GATC | 2 cut(s) | 259, 294 |
| DraI | TTTAAA | 1 cut(s) | 289 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| FaeI | CATG | 1 cut(s) | 318 |
| FaiI | YATR | 2 cut(s) | 316, 326 |
| FatI | CATG | 1 cut(s) | 314 |
| Fnu4HI | GCNGC | 5 cut(s) | 39, 222, 237, 240, 243 |
| Fsp4HI | GCNGC | 5 cut(s) | 39, 222, 237, 240, 243 |
| FspBI | CTAG | 1 cut(s) | 24 |
| GluI | GCNGC | 5 cut(s) | 39, 222, 237, 240, 243 |
| HaeIII | GGCC | 1 cut(s) | 319 |
| Hin1II | CATG | 1 cut(s) | 318 |
| HinfI | GANTC | 2 cut(s) | 20, 62 |
| Hpy188III | TCNNGA | 2 cut(s) | 24, 59 |
| HpyCH4IV | ACGT | 1 cut(s) | 226 |
| HpyCH4V | TGCA | 3 cut(s) | 151, 221, 245 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 1 cut(s) | 300 |
| HpySE526I | ACGT | 1 cut(s) | 226 |
| Hsp92II | CATG | 1 cut(s) | 318 |
| Kzo9I | GATC | 2 cut(s) | 259, 294 |
| LpnPI | CCDG | 2 cut(s) | 30, 163 |
| Lsp1109I | GCAGC | 3 cut(s) | 226, 229, 233 |
| LweI | GCATC | 2 cut(s) | 208, 217 |
| MaeI | CTAG | 1 cut(s) | 24 |
| MaeII | ACGT | 1 cut(s) | 226 |
| MalI | GATC | 2 cut(s) | 261, 296 |
| MboI | GATC | 2 cut(s) | 259, 294 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MluCI | AATT | 1 cut(s) | 75 |
| MnlI | CCTC | 4 cut(s) | 43, 109, 129, 159 |
| MseI | TTAA | 4 cut(s) | 90, 192, 201, 288 |
| MspA1I | CMGCKG | 1 cut(s) | 239 |
| Mva1269I | GAATGC | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeII | GATC | 2 cut(s) | 259, 294 |
| NlaIII | CATG | 1 cut(s) | 318 |
| PctI | GAATGC | 1 cut(s) | 258 |
| PfeI | GAWTC | 2 cut(s) | 20, 62 |
| PkrI | GCNGC | 5 cut(s) | 40, 223, 238, 241, 244 |
| Ppu21I | YACGTR | 1 cut(s) | 227 |
| PspPI | GGNCC | 1 cut(s) | 318 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| SaqAI | TTAA | 4 cut(s) | 90, 192, 201, 288 |
| SatI | GCNGC | 5 cut(s) | 39, 222, 237, 240, 243 |
| Sau3AI | GATC | 2 cut(s) | 259, 294 |
| Sau96I | GGNCC | 1 cut(s) | 318 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SetI | ASST | 2 cut(s) | 120, 229 |
| SfaNI | GCATC | 2 cut(s) | 208, 217 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| SmlI | CTYRAG | 2 cut(s) | 98, 133 |
| SmoI | CTYRAG | 2 cut(s) | 98, 133 |
| Sse9I | AATT | 1 cut(s) | 75 |
| SsiI | CCGC | 3 cut(s) | 38, 237, 279 |
| SspMI | CTAG | 1 cut(s) | 24 |
| TaiI | ACGT | 1 cut(s) | 229 |
| TaqI | TCGA | 2 cut(s) | 120, 164 |
| TasI | AATT | 1 cut(s) | 75 |
| TauI | GCSGC | 2 cut(s) | 41, 239 |
| TfiI | GAWTC | 2 cut(s) | 20, 62 |
| Tru1I | TTAA | 4 cut(s) | 90, 192, 201, 288 |
| Tru9I | TTAA | 4 cut(s) | 90, 192, 201, 288 |
| TseI | GCWGC | 3 cut(s) | 221, 239, 242 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| XapI | RAATTY | 1 cut(s) | 75 |
| XbaI | TCTAGA | 1 cut(s) | 23 |
| XspI | CTAG | 1 cut(s) | 24 |