Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

7996870 .. 8001633

Gene Structure 4764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGCTGGTGCGGCTGAAGTGGAGGGTTTTCAGCAGTCTGTCGATGAAATATCGGCTAAAGTTAATACACTTGAGAAAAGAGTGAACGAGGTCGAGCAGTATTACCTGAGGAAAGGAAGTCCAACCTCTTCGAAGGAGAAAGAGAGGGAGAAACACTTTAACACCATTAAGAAGCAGCAACAAGATGCATCACGTAGGCGAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCGGTAATCTTCAAACAGATCATTCAGCACAAGTGGTCATGGCCCTTTATGTCACCTGTAGATGCTCAGAGTCTGGGATTGCATGACTATCATCAAGTTATTGAGAAGCCCATGGACCTTGGTACAGTACAAAGTAAAATGGAAACTGGTGGGTATACGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAATGCAATCAAATACAATGATGAAAAAGATGATGTCCATGTGATGGCCCAAACACTGTTGGAAAAATTGGAAGAAAAATGGCTACAACTCTTGCCTAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCAGAGGCACGGGTAGACATTAAACACGCTGAGGAATTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGTGAGCTTGTTGATATTGATGTATATTTGAAAGACCTCAAAAAGTTGGTGGTTCAGAAGTGCAGGAAAATGTCTTTTGATGATAAAAGACGACTTGGGACAGCTCTCACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTGGATATAGTTGCTCAGGATAACCCCGAGTTCCAAGCAACTGCGCAGGAGGTGGATCTGGACATTGATACTCAGAGTGACTACACGTTATGGAGGTTGAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCAAGCTGCTGCATTAGCTGCCGCACAGGTTCCTGAAGCCATGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCATCTGATGCCGTTGCCAAGCCTGCCCCTAAAAGGACCAAAAAGATCTCTGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

367

Amino Acids

41.51

Weight (kDa)

7.71

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	96 - 177	2.6e-19	Bromodomain
BET	PF17035	251 - 314	2.6e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	870
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	2 cut(s)	434, 630
AciI	CCGC	3 cut(s)	47, 240, 981
AclWI	GGATC	2 cut(s)	684, 888
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	3 cut(s)	72, 828, 1014
AfaI	GTAC	2 cut(s)	403, 408
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	523, 1074
AflIII	ACRYGT	1 cut(s)	909
AgsI	TTSAA	6 cut(s)	271, 292, 478, 587, 715, 925
AluBI	AGCT	4 cut(s)	691, 788, 965, 977
AluI	AGCT	4 cut(s)	691, 788, 965, 977
AlwI	GGATC	2 cut(s)	684, 888
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	851
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	4 cut(s)	320, 525, 669, 957
ApeKI	GCWGC	6 cut(s)	211, 242, 245, 965, 968, 977
ApoI	RAATTY	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	41, 871
AspS9I	GGNCC	5 cut(s)	321, 394, 526, 958, 1077
AsuHPI	GGTGA	1 cut(s)	324
AsuII	TTCGAA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	394, 1077
AxyI	CCTNAGG	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	671
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	6 cut(s)	223, 229, 232, 952, 955, 964
BccI	CCATC	2 cut(s)	517, 1051
BceAI	ACGGC	1 cut(s)	1037
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	668
BglII	AGATCT	3 cut(s)	262, 811, 1086
BisI	GCNGC	9 cut(s)	48, 212, 240, 243, 246, 966, 969, 978, 981
BlsI	GCNGC	9 cut(s)	49, 213, 241, 244, 247, 967, 970, 979, 982
Bme18I	GGWCC	2 cut(s)	394, 1077
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	5 cut(s)	321, 394, 526, 958, 1077
BmiI	GGNNCC	3 cut(s)	6, 990, 1041
BmsI	GCATC	5 cut(s)	211, 233, 331, 931, 1039
Bpu10I	CCTNAGC	2 cut(s)	645, 840
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	390, 397, 672, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 1074
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	390, 397, 672, 999
BseGI	GGATG	1 cut(s)	946
BseLI	CCNNNNNNNGG	2 cut(s)	523, 1074
BseMII	CTCAG	6 cut(s)	134, 359, 636, 829, 854, 911
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	6 cut(s)	223, 229, 232, 952, 955, 964
BsgI	GTGCAG	1 cut(s)	766
BshFI	GGCC	4 cut(s)	322, 527, 671, 959
BsiHKCI	CYCGRG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	2 cut(s)	523, 1074
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	2 cut(s)	261, 487
BsnI	GGCC	4 cut(s)	322, 527, 671, 959
BsoBI	CYCGRG	1 cut(s)	851
Bsp119I	TTCGAA	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
Bsp19I	CCATGG	2 cut(s)	390, 999
BspACI	CCGC	3 cut(s)	47, 240, 981
BspANI	GGCC	4 cut(s)	322, 527, 671, 959
BspCNI	CTCAG	6 cut(s)	135, 358, 637, 828, 853, 910
BspLI	GGNNCC	3 cut(s)	6, 990, 1041
BspPI	GGATC	2 cut(s)	684, 888
BspT104I	TTCGAA	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	4 cut(s)	390, 397, 672, 999
BssMI	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
BssNAI	GTATAC	1 cut(s)	435
BssT1I	CCWWGG	4 cut(s)	390, 397, 672, 999
Bst1107I	GTATAC	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	406, 537, 798
Bst6I	CTCTTC	2 cut(s)	169, 582
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstBAI	YACGTR	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	237, 664, 1065
BstDEI	CTNAG	7 cut(s)	143, 345, 645, 680, 815, 840, 897
BstDSI	CCRYGG	2 cut(s)	390, 999
BstF5I	GGATG	1 cut(s)	946
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 871
BstKTI	GATC	6 cut(s)	265, 300, 679, 814, 883, 1089
BstMBI	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 245, 668, 965, 974, 977, 1064
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	6 cut(s)	223, 229, 232, 952, 955, 964
BstX2I	RGATCY	5 cut(s)	262, 676, 811, 880, 1086
BstYI	RGATCY	5 cut(s)	262, 676, 811, 880, 1086
BstZ17I	GTATAC	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	4 cut(s)	322, 527, 671, 959
BtgI	CCRYGG	2 cut(s)	390, 999
BtsCI	GGATG	1 cut(s)	946
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	533, 691
Cac8I	GCNNGC	3 cut(s)	237, 664, 1065
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	2 cut(s)	41, 871
Cfr13I	GGNCC	5 cut(s)	321, 394, 526, 958, 1077
Csp6I	GTAC	2 cut(s)	402, 407
CviAII	CATG	6 cut(s)	318, 362, 391, 518, 667, 1000
CviQI	GTAC	2 cut(s)	402, 407
DdeI	CTNAG	7 cut(s)	143, 345, 645, 680, 815, 840, 897
DpnI	GATC	6 cut(s)	264, 299, 678, 813, 882, 1088
DpnII	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	169, 582
EarI	CTCTTC	2 cut(s)	169, 582
Eco130I	CCWWGG	4 cut(s)	390, 397, 672, 999
Eco47I	GGWCC	2 cut(s)	394, 1077
Eco47III	AGCGCT	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	72, 828, 1014
Eco81I	CCTNAGG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	851
EcoT14I	CCWWGG	4 cut(s)	390, 397, 672, 999
EcoT22I	ATGCAT	2 cut(s)	226, 946
ErhI	CCWWGG	4 cut(s)	390, 397, 672, 999
FaeI	CATG	6 cut(s)	321, 365, 394, 521, 670, 1003
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	6 cut(s)	317, 361, 390, 517, 666, 999
FblI	GTMKAC	2 cut(s)	434, 630
Fnu4HI	GCNGC	9 cut(s)	48, 212, 240, 243, 246, 966, 969, 978, 981
FokI	GGATG	1 cut(s)	953
Fsp4HI	GCNGC	9 cut(s)	48, 212, 240, 243, 246, 966, 969, 978, 981
FspBI	CTAG	1 cut(s)	33
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	2 cut(s)	40, 870
GluI	GCNGC	9 cut(s)	48, 212, 240, 243, 246, 966, 969, 978, 981
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	322, 527, 671, 959
HhaI	GCGC	2 cut(s)	41, 871
Hin1II	CATG	6 cut(s)	321, 365, 394, 521, 670, 1003
Hin6I	GCGC	2 cut(s)	39, 869
HinP1I	GCGC	2 cut(s)	39, 869
HinfI	GANTC	2 cut(s)	29, 349
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	3 cut(s)	121, 435, 631
Hpy188I	TCNGA	4 cut(s)	348, 741, 900, 1048
Hpy188III	TCNNGA	6 cut(s)	33, 478, 806, 842, 884, 992
Hpy8I	GTNNAC	3 cut(s)	121, 435, 631
HpyAV	CCTTC	2 cut(s)	163, 919
HpyCH4III	ACNGT	3 cut(s)	406, 537, 798
HpyCH4IV	ACGT	2 cut(s)	229, 911
HpyCH4V	TGCA	8 cut(s)	224, 248, 361, 485, 747, 944, 971, 1019
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 245, 668, 965, 974, 977, 1064
HpyF3I	CTNAG	7 cut(s)	143, 345, 645, 680, 815, 840, 897
HpySE526I	ACGT	2 cut(s)	229, 911
Hsp92II	CATG	6 cut(s)	321, 365, 394, 521, 670, 1003
HspAI	GCGC	2 cut(s)	39, 869
Kzo9I	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
LmnI	GCTCC	2 cut(s)	4, 1039
Lsp1109I	GCAGC	6 cut(s)	223, 229, 232, 952, 955, 964
LweI	GCATC	5 cut(s)	211, 233, 331, 931, 1039
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	229, 911
MaeIII	GTNAC	2 cut(s)	330, 902
MalI	GATC	6 cut(s)	264, 299, 678, 813, 882, 1088
MboI	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
MboII	GAAGA	5 cut(s)	156, 280, 563, 599, 821
MflI	RGATCY	5 cut(s)	262, 676, 811, 880, 1086
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	2 cut(s)	545, 650
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	182, 519
Mox20I	TGGCCA	1 cut(s)	671
Mph1103I	ATGCAT	2 cut(s)	226, 946
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	6 cut(s)	99, 195, 204, 636, 947, 954
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	242
Mva1269I	GAATGC	2 cut(s)	261, 487
MwoI	GCNNNNNNNGC	7 cut(s)	47, 245, 668, 965, 974, 977, 1064
NcoI	CCATGG	2 cut(s)	390, 999
NdeII	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
NlaIII	CATG	6 cut(s)	321, 365, 394, 521, 670, 1003
NlaIV	GGNNCC	3 cut(s)	6, 990, 1041
NmuCI	GTSAC	2 cut(s)	330, 902
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	226, 946
NspV	TTCGAA	1 cut(s)	167
PctI	GAATGC	2 cut(s)	261, 487
PfeI	GAWTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	9 cut(s)	49, 213, 241, 244, 247, 967, 970, 979, 982
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Ppu21I	YACGTR	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	6, 990, 1041
PspPI	GGNCC	5 cut(s)	321, 394, 526, 958, 1077
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	5 cut(s)	262, 676, 811, 880, 1086
RsaI	GTAC	2 cut(s)	403, 408
RsaNI	GTAC	2 cut(s)	402, 407
SaqAI	TTAA	6 cut(s)	99, 195, 204, 636, 947, 954
SatI	GCNGC	9 cut(s)	48, 212, 240, 243, 246, 966, 969, 978, 981
Sau3AI	GATC	6 cut(s)	262, 297, 676, 811, 880, 1086
Sau96I	GGNCC	5 cut(s)	321, 394, 526, 958, 1077
SchI	GAGTC	1 cut(s)	358
SfaNI	GCATC	5 cut(s)	211, 233, 331, 931, 1039
SfcI	CTRYAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	2 cut(s)	394, 1077
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	545, 650
SsiI	CCGC	3 cut(s)	47, 240, 981
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	4 cut(s)	390, 397, 672, 999
TaaI	ACNGT	3 cut(s)	406, 537, 798
TaiI	ACGT	2 cut(s)	232, 914
TaqI	TCGA	3 cut(s)	78, 129, 167
TasI	AATT	2 cut(s)	545, 650
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	3 cut(s)	50, 242, 983
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	6 cut(s)	99, 195, 204, 636, 947, 954
Tru9I	TTAA	6 cut(s)	99, 195, 204, 636, 947, 954
TscAI	CASTG	2 cut(s)	540, 691
TseFI	GTSAC	2 cut(s)	330, 902
TseI	GCWGC	6 cut(s)	211, 242, 245, 965, 968, 977
Tsp45I	GTSAC	2 cut(s)	330, 902
TspDTI	ATGAA	3 cut(s)	6, 96, 516
TspRI	CASTG	2 cut(s)	540, 691
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	2 cut(s)	394, 1077
XapI	RAATTY	1 cut(s)	650
XbaI	TCTAGA	1 cut(s)	32
XmiI	GTMKAC	2 cut(s)	434, 630
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	226, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.